| 1 | # $Id: Portfile 38755 2008-07-30 09:45:20Z ryandesign@macports.org $ |
|---|
| 2 | |
|---|
| 3 | PortSystem 1.0 |
|---|
| 4 | |
|---|
| 5 | name ncbi_tools |
|---|
| 6 | version 20080302 |
|---|
| 7 | description blast is a set of tools for doing nucleotide and protein searches |
|---|
| 8 | maintainers mike.thon@gmail.com |
|---|
| 9 | categories science |
|---|
| 10 | platforms darwin |
|---|
| 11 | homepage http://www.ncbi.nlm.nih.gov/blast/ |
|---|
| 12 | fetch.use_epsv no |
|---|
| 13 | master_sites ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/20080302 |
|---|
| 14 | distfiles ncbi.tar.gz |
|---|
| 15 | checksums md5 f8de9d7264aed7de1d87d2185df2e07c |
|---|
| 16 | dist_subdir ${name}/${version} |
|---|
| 17 | worksrcdir |
|---|
| 18 | use_configure no |
|---|
| 19 | build.cmd './ncbi/make/makedis.csh' |
|---|
| 20 | build.target |
|---|
| 21 | set binaries "Psequin blastall dosimple gil2bin sbtedit \ |
|---|
| 22 | asn2ff blastall_old entrcmd idfetch seedtop \ |
|---|
| 23 | asn2gb blastcl3 entrez2 impala seqtest \ |
|---|
| 24 | asn2idx blastclust errhdr indexpub tbl2asn \ |
|---|
| 25 | asn2xml blastpgp fa2htgs makemat test_regexp \ |
|---|
| 26 | asndhuff cdscan fastacmd makeset testcore \ |
|---|
| 27 | asntool checksub findspl megablast testobj \ |
|---|
| 28 | bl2bag.cgi copymat formatdb ncbisort testval \ |
|---|
| 29 | bl2seq ddv formatrpsdb nph-viewgif.cgi udv \ |
|---|
| 30 | blast debruijn gene2xml psiblast.REAL vecscreen \ |
|---|
| 31 | blast.REAL demo_regexp getmesh psiblast_cs.REAL wblast2.REAL \ |
|---|
| 32 | blast_cs.REAL demo_regexp_grep getpub rpsblast wblast2_cs.REAL" |
|---|
| 33 | |
|---|
| 34 | set manpages "Psequin.1 asnval.1 cleanasn.1 formatdb.1 insdseqget.1 tbl2asn.1 \ |
|---|
| 35 | asn2all.1 bl2seq.1 copymat.1 formatrpsdb.1 makemat.1 trna2sap.1 \ |
|---|
| 36 | asn2asn.1 blast.1 ddv.1 gbseqget.1 makeset.1 trna2tbl.1 \ |
|---|
| 37 | asn2ff.1 blastall.1 debruijn.1 gene2xml.1 megablast.1 udv.1 \ |
|---|
| 38 | asn2fsa.1 blastall_old.1 entrez2.1 getmesh.1 nps2gps.1 vecscreen.1 \ |
|---|
| 39 | asn2gb.1 blastcl3.1 errhdr.1 getpub.1 rpsblast.1 \ |
|---|
| 40 | asn2idx.1 blastclust.1 fa2htgs.1 gil2bin.1 sbtedit.1 \ |
|---|
| 41 | asn2xml.1 blastpgp.1 fastacmd.1 idfetch.1 seedtop.1 \ |
|---|
| 42 | asndhuff.1 cdscan.1 findspl.1 impala.1 sortbyquote.1 \ |
|---|
| 43 | asntool.1 checksub.1 fmerge.1 indexpub.1 spidey.1" |
|---|
| 44 | |
|---|
| 45 | destroot { |
|---|
| 46 | xinstall -m 755 -d ${destroot}${prefix}/share/doc/${name} |
|---|
| 47 | file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name} |
|---|
| 48 | foreach binary ${binaries} { |
|---|
| 49 | xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/ |
|---|
| 50 | } |
|---|
| 51 | foreach manpage ${manpages} { |
|---|
| 52 | xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/ |
|---|
| 53 | } |
|---|
| 54 | } |
|---|
| 55 | |
|---|
| 56 | long_description ${description} |
|---|
| 57 | livecheck.check moddate |
|---|
