Ticket #22460: error.log

File error.log, 16.6 KB (added by yasir.suhail@…, 15 years ago)

Output log of sudo port install py26-numpy

Line 
1--->  Computing dependencies for py26-numpy
2--->  Building py26-numpy
3Running from numpy source directory.
4non-existing path in 'numpy/distutils': 'site.cfg'
5F2PY Version 2
6blas_opt_info:
7blas_mkl_info:
8  libraries mkl,vml,guide not found in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib
9  libraries mkl,vml,guide not found in /usr/local/lib
10  libraries mkl,vml,guide not found in /usr/lib
11  libraries mkl,vml,guide not found in /opt/local/lib
12  NOT AVAILABLE
13
14atlas_blas_threads_info:
15Setting PTATLAS=ATLAS
16Setting PTATLAS=ATLAS
17Setting PTATLAS=ATLAS
18  FOUND:
19    libraries = ['ptf77blas', 'ptcblas', 'atlas']
20    library_dirs = ['/opt/local/lib']
21    language = c
22    include_dirs = ['/opt/local/include']
23
24/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-numpy/work/numpy-1.3.0/numpy/distutils/command/config.py:361: DeprecationWarning:
25+++++++++++++++++++++++++++++++++++++++++++++++++
26Usage of get_output is deprecated: please do not
27use it anymore, and avoid configuration checks
28involving running executable on the target machine.
29+++++++++++++++++++++++++++++++++++++++++++++++++
30
31  DeprecationWarning)
32customize NAGFCompiler
33Could not locate executable f95
34customize AbsoftFCompiler
35Could not locate executable f90
36Could not locate executable f77
37customize IBMFCompiler
38Could not locate executable xlf90
39Could not locate executable xlf
40customize IntelFCompiler
41Could not locate executable ifort
42Could not locate executable ifc
43customize GnuFCompiler
44Could not locate executable g77
45customize Gnu95FCompiler
46Could not locate executable gfortran
47customize G95FCompiler
48Found executable /opt/local/bin/g95
49customize G95FCompiler
50customize G95FCompiler using config
51compiling '_configtest.c':
52
53/* This file is generated from numpy/distutils/system_info.py */
54void ATL_buildinfo(void);
55int main(void) {
56  ATL_buildinfo();
57  return 0;
58}
59C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
60
61compile options: '-c'
62gcc-mp-4.3: _configtest.c
63/opt/local/bin/gcc-mp-4.3 _configtest.o -L/opt/local/lib -lptf77blas -lptcblas -latlas -o _configtest
64ATLAS version 3.8.3 built by root on Tue Nov 10 13:10:34 EST 2009:
65   UNAME    : Darwin taupe.ebalto.jhmi.edu 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
66   INSTFLG  : -1 0 -a 1
67   ARCHDEFS : -DATL_OS_OSX -DATL_ARCH_Core2 -DATL_CPUMHZ=2330 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632
68   F2CDEFS  : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
69   CACHEEDGE: 8388608
70   F77      : /opt/local/bin/gfortran-mp-4.3, version GNU Fortran (GCC) 4.3.4
71   F77FLAGS : -O -fPIC -m32
72   SMC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
73   SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
74   SKC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
75   SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
76success!
77removing: _configtest.c _configtest.o _configtest
78  FOUND:
79    libraries = ['ptf77blas', 'ptcblas', 'atlas']
80    library_dirs = ['/opt/local/lib']
81    language = c
82    define_macros = [('ATLAS_INFO', '"\\"3.8.3\\""')]
83    include_dirs = ['/opt/local/include']
84
85lapack_opt_info:
86lapack_mkl_info:
87mkl_info:
88  libraries mkl,vml,guide not found in /opt/local/Library/Frameworks/Python.framework/Versions/2.6/lib
89  libraries mkl,vml,guide not found in /usr/local/lib
90  libraries mkl,vml,guide not found in /usr/lib
91  libraries mkl,vml,guide not found in /opt/local/lib
92  NOT AVAILABLE
93
94  NOT AVAILABLE
95
96atlas_threads_info:
97Setting PTATLAS=ATLAS
98  libraries lapack_atlas not found in /opt/local/lib
99numpy.distutils.system_info.atlas_threads_info
100Setting PTATLAS=ATLAS
101Setting PTATLAS=ATLAS
102  FOUND:
103    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
104    library_dirs = ['/opt/local/lib']
105    language = f77
106    include_dirs = ['/opt/local/include']
107
108customize NAGFCompiler
109customize AbsoftFCompiler
110customize IBMFCompiler
111customize IntelFCompiler
112customize GnuFCompiler
113customize Gnu95FCompiler
114customize G95FCompiler
115customize G95FCompiler
116customize G95FCompiler using config
117compiling '_configtest.c':
118
119/* This file is generated from numpy/distutils/system_info.py */
120void ATL_buildinfo(void);
121int main(void) {
122  ATL_buildinfo();
123  return 0;
124}
125C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
126
127compile options: '-c'
128gcc-mp-4.3: _configtest.c
129/opt/local/bin/gcc-mp-4.3 _configtest.o -L/opt/local/lib -llapack -lptf77blas -lptcblas -latlas -o _configtest
130ATLAS version 3.8.3 built by root on Tue Nov 10 13:10:34 EST 2009:
131   UNAME    : Darwin taupe.ebalto.jhmi.edu 9.8.0 Darwin Kernel Version 9.8.0: Wed Jul 15 16:55:01 PDT 2009; root:xnu-1228.15.4~1/RELEASE_I386 i386
132   INSTFLG  : -1 0 -a 1
133   ARCHDEFS : -DATL_OS_OSX -DATL_ARCH_Core2 -DATL_CPUMHZ=2330 -DATL_SSE3 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632
134   F2CDEFS  : -DAdd_ -DF77_INTEGER=int -DStringSunStyle
135   CACHEEDGE: 8388608
136   F77      : /opt/local/bin/gfortran-mp-4.3, version GNU Fortran (GCC) 4.3.4
137   F77FLAGS : -O -fPIC -m32
138   SMC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
139   SMCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
140   SKC      : /opt/local/bin/gcc-mp-4.3, version gcc-mp-4.3 (GCC) 4.3.4
141   SKCFLAGS : -fomit-frame-pointer -mfpmath=sse -msse3 -O2 -fPIC -m32
142success!
143removing: _configtest.c _configtest.o _configtest
144  FOUND:
145    libraries = ['lapack', 'ptf77blas', 'ptcblas', 'atlas']
146    library_dirs = ['/opt/local/lib']
147    language = f77
148    define_macros = [('ATLAS_INFO', '"\\"3.8.3\\""')]
149    include_dirs = ['/opt/local/include']
150
151running build
152running config_cc
153unifing config_cc, config, build_clib, build_ext, build commands --compiler options
154running config_fc
155unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
156running build_src
157building py_modules sources
158building library "npymath" sources
159building extension "numpy.core._sort" sources
160  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
161  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
162numpy/core/code_generators/genapi.py:9: DeprecationWarning: the md5 module is deprecated; use hashlib instead
163  import md5
164executing numpy/core/code_generators/generate_numpy_api.py
165  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h' to sources.
166numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h']
167building extension "numpy.core.multiarray" sources
168  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
169  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
170executing numpy/core/code_generators/generate_numpy_api.py
171  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h' to sources.
172  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/src' to include_dirs.
173numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/src/scalartypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/arraytypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h']
174building extension "numpy.core.umath" sources
175  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
176  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
177executing numpy/core/code_generators/generate_ufunc_api.py
178  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h' to sources.
179  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/src' to include_dirs.
180numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/src/scalartypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/arraytypes.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/umath_funcs.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/src/umath_loops.inc', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h']
181building extension "numpy.core.scalarmath" sources
182  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h' to sources.
183  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h' to sources.
184executing numpy/core/code_generators/generate_numpy_api.py
185  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h' to sources.
186executing numpy/core/code_generators/generate_ufunc_api.py
187  adding 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h' to sources.
188numpy.core - nothing done with h_files = ['build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/config.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/numpyconfig.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__multiarray_api.h', 'build/src.macosx-10.5-i386-2.6/numpy/core/include/numpy/__ufunc_api.h']
189building extension "numpy.core._dotblas" sources
190  adding 'numpy/core/blasdot/_dotblas.c' to sources.
191building extension "numpy.core.umath_tests" sources
192building extension "numpy.lib._compiled_base" sources
193building extension "numpy.numarray._capi" sources
194building extension "numpy.fft.fftpack_lite" sources
195building extension "numpy.linalg.lapack_lite" sources
196  adding 'numpy/linalg/lapack_litemodule.c' to sources.
197  adding 'numpy/linalg/python_xerbla.c' to sources.
198building extension "numpy.random.mtrand" sources
199/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_python_py26-numpy/work/numpy-1.3.0/numpy/distutils/command/config.py:39: DeprecationWarning:
200+++++++++++++++++++++++++++++++++++++++++++++++++
201Usage of try_run is deprecated: please do not
202use it anymore, and avoid configuration checks
203involving running executable on the target machine.
204+++++++++++++++++++++++++++++++++++++++++++++++++
205
206  DeprecationWarning)
207customize NAGFCompiler
208customize AbsoftFCompiler
209customize IBMFCompiler
210customize IntelFCompiler
211customize GnuFCompiler
212customize Gnu95FCompiler
213customize G95FCompiler
214customize G95FCompiler
215customize G95FCompiler using config
216C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
217
218compile options: '-Inumpy/core/src -Inumpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c'
219gcc-mp-4.3: _configtest.c
220/opt/local/bin/gcc-mp-4.3 _configtest.o -o _configtest
221_configtest
222failure.
223removing: _configtest.c _configtest.o _configtest
224building data_files sources
225running build_py
226copying numpy/version.py -> build/lib.macosx-10.5-i386-2.6/numpy
227copying build/src.macosx-10.5-i386-2.6/numpy/__config__.py -> build/lib.macosx-10.5-i386-2.6/numpy
228copying build/src.macosx-10.5-i386-2.6/numpy/distutils/__config__.py -> build/lib.macosx-10.5-i386-2.6/numpy/distutils
229running build_clib
230customize UnixCCompiler
231customize UnixCCompiler using build_clib
232running build_ext
233customize UnixCCompiler
234customize UnixCCompiler using build_ext
235customize NAGFCompiler
236customize AbsoftFCompiler
237customize IBMFCompiler
238customize IntelFCompiler
239customize GnuFCompiler
240customize Gnu95FCompiler
241customize G95FCompiler
242customize G95FCompiler
243customize G95FCompiler using build_ext
244building 'numpy.linalg.lapack_lite' extension
245compiling C sources
246C compiler: /opt/local/bin/gcc-mp-4.3 -fno-strict-aliasing -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes
247
248compile options: '-DATLAS_INFO="\"3.8.3\"" -I/opt/local/include -Inumpy/core/include -Ibuild/src.macosx-10.5-i386-2.6/numpy/core/include/numpy -Inumpy/core/src -Inumpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.6/include/python2.6 -c'
249/opt/local/bin/g95 -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python build/temp.macosx-10.5-i386-2.6/numpy/linalg/lapack_litemodule.o build/temp.macosx-10.5-i386-2.6/numpy/linalg/python_xerbla.o -L/opt/local/lib -Lbuild/temp.macosx-10.5-i386-2.6 -llapack -lptf77blas -lptcblas -latlas -o build/lib.macosx-10.5-i386-2.6/numpy/linalg/lapack_lite.so
250/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
251/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
252/opt/local/bin/odlibtool: object: /opt/local/lib/liblapack.dylib malformed object (unknown load command 8)
253/opt/local/bin/odlibtool: object: /opt/local/lib/libptf77blas.dylib malformed object (unknown load command 8)
254/opt/local/bin/odlibtool: object: /opt/local/lib/libptcblas.dylib malformed object (unknown load command 8)
255/opt/local/bin/odlibtool: object: /opt/local/lib/libatlas.dylib malformed object (unknown load command 8)
256/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
257/opt/local/bin/odlibtool: for architecture: (null) file: -lm is not an object file (not allowed in a library)
258/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
259/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
260/opt/local/bin/odlibtool: for architecture: (null) file: -lmx is not an object file (not allowed in a library)
261/opt/local/bin/odlibtool: for architecture i386 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
262/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
263/opt/local/bin/odlibtool: for architecture: (null) file: -lSystem is not an object file (not allowed in a library)
264/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
265/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
266/opt/local/bin/odlibtool: object: /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python malformed object (unknown load command 8)
267/opt/local/bin/odlibtool: object: /opt/local/lib/liblapack.dylib malformed object (unknown load command 8)
268/opt/local/bin/odlibtool: object: /opt/local/lib/libptf77blas.dylib malformed object (unknown load command 8)
269/opt/local/bin/odlibtool: object: /opt/local/lib/libptcblas.dylib malformed object (unknown load command 8)
270/opt/local/bin/odlibtool: object: /opt/local/lib/libatlas.dylib malformed object (unknown load command 8)
271/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
272/opt/local/bin/odlibtool: for architecture: (null) file: -lm is not an object file (not allowed in a library)
273/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libm.dylib malformed object (unknown load command 7)
274/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
275/opt/local/bin/odlibtool: for architecture: (null) file: -lmx is not an object file (not allowed in a library)
276/opt/local/bin/odlibtool: for architecture i386 object: /usr/lib///libmx.dylib malformed object (unknown load command 5)
277/opt/local/bin/odlibtool: for architecture ppc7400 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
278/opt/local/bin/odlibtool: for architecture: (null) file: -lSystem is not an object file (not allowed in a library)
279/opt/local/bin/odlibtool: for architecture ppc64 object: /usr/lib///libSystem.dylib malformed object (unknown load command 7)
280error: Command "/opt/local/bin/g95 -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python -dynamiclib /opt/local/Library/Frameworks/Python.framework/Versions/2.6/Python build/temp.macosx-10.5-i386-2.6/numpy/linalg/lapack_litemodule.o build/temp.macosx-10.5-i386-2.6/numpy/linalg/python_xerbla.o -L/opt/local/lib -Lbuild/temp.macosx-10.5-i386-2.6 -llapack -lptf77blas -lptcblas -latlas -o build/lib.macosx-10.5-i386-2.6/numpy/linalg/lapack_lite.so" failed with exit status 1
281Warning: the following items did not execute (for py26-numpy): org.macports.activate org.macports.build org.macports.destroot org.macports.install