| 1 | # $Id$ |
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| 2 | |
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| 3 | PortSystem 1.0 |
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| 4 | |
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| 5 | name bowtie |
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| 6 | version 0.12.7 |
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| 7 | categories science biology |
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| 8 | platforms darwin |
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| 9 | maintainers gmail.com:haroldpimentel |
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| 10 | description Bowtie is an ultrafast, memory-efficient short read aligner. |
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| 11 | long_description Bowtie is an ultrafast, memory-efficient short read aligner. \ |
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| 12 | It aligns short DNA sequences (reads) to the human genome at \ |
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| 13 | a rate of over 25 million 35-bp reads per hour. Bowtie indexes \ |
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| 14 | the genome with a Burrows-Wheeler index to keep its memory footprint \ |
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| 15 | small: typically about 2.2 GB for the human genome (2.9 GB for paired-end). |
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| 16 | homepage http://bowtie-bio.sourceforge.net/ |
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| 17 | master_sites sourceforge:bowtie-bio |
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| 18 | use_zip yes |
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| 19 | distfiles ${distname}-src${extract.suffix} |
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| 20 | checksums md5 2808d61eaf15c9f7138794766c99a561 \ |
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| 21 | sha1 0eb752db072a2da6fc6dac55d2ab825422e994ce \ |
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| 22 | rmd160 7b2210d4526c4818936b729b0e68f4c13a101fc6 |
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| 23 | build.target allall |
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| 24 | use_configure no |
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| 25 | destroot { |
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| 26 | xinstall -m 755 ${worksrcpath}/bowtie ${worksrcpath}/bowtie-debug \ |
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| 27 | ${worksrcpath}/bowtie-build ${worksrcpath}/bowtie-build-debug \ |
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| 28 | ${worksrcpath}/bowtie-inspect ${worksrcpath}/bowtie-inspect-debug \ |
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| 29 | ${destroot}${prefix}/bin |
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| 30 | xinstall -d ${destroot}${prefix}/share/doc/${name} |
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| 31 | xinstall -m 644 -W ${worksrcpath} \ |
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| 32 | AUTHORS COPYING MANUAL NEWS TUTORIAL \ |
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| 33 | VERSION MANUAL.markdown ${destroot}${prefix}/share/doc/${name} |
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| 34 | } |
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