Ticket #27319: atlas_config_err.log

version:1
:debug:main epoch: in tree: 1 installed: 1
:debug:main gcc44 4.4.5_0 exists in the ports tree
:debug:main gcc44 4.4.5_0  is the latest installed
:debug:main gcc44 4.4.5_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/lang/gcc44
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! gcc44 4.4.5_0 >= gcc44 4.4.5_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main gmp 5.0.1_0 exists in the ports tree
:debug:main gmp 5.0.1_0  is the latest installed
:debug:main gmp 5.0.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/gmp
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! gmp 5.0.1_0 >= gmp 5.0.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main mpfr 3.0.0-p8_0 exists in the ports tree
:debug:main mpfr 3.0.0-p8_0  is the latest installed
:debug:main mpfr 3.0.0-p8_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mpfr
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! mpfr 3.0.0-p8_0 >= mpfr 3.0.0-p8_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main libiconv 1.13.1_0 exists in the ports tree
:debug:main libiconv 1.13.1_0  is the latest installed
:debug:main libiconv 1.13.1_0 +universal is active
:debug:main Merging existing variants '+universal' into variants
:debug:main new fully merged portvariants: universal +
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/textproc/libiconv
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Executing variant universal provides universal
:debug:main No need to upgrade! libiconv 1.13.1_0 >= libiconv 1.13.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main bzip2 1.0.6_0 exists in the ports tree
:debug:main bzip2 1.0.6_0  is the latest installed
:debug:main bzip2 1.0.6_0 +universal is active
:debug:main Merging existing variants '+universal' into variants
:debug:main new fully merged portvariants: universal +
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/bzip2
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Executing variant universal provides universal
:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main gzip 1.4_0 exists in the ports tree
:debug:main gzip 1.4_0  is the latest installed
:debug:main gzip 1.4_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/gzip
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! gzip 1.4_0 >= gzip 1.4_0
:msg:main --->  Computing dependencies for atlas:info:main .:debug:main Searching for dependency: gcc44
:debug:main Found Dependency: receipt exists for gcc44
:debug:main Searching for dependency: bzip2
:debug:main Found Dependency: receipt exists for bzip2
:debug:main Searching for dependency: gzip
:debug:main Found Dependency: receipt exists for gzip
:msg:main 
:debug:main Executing org.macports.main (atlas)
:debug:main Skipping completed org.macports.fetch (atlas)
:msg:main --->  Verifying checksum(s) for atlas
:debug:checksum checksum phase started at Tue Nov 16 13:31:39 CST 2010
:debug:checksum Executing org.macports.checksum (atlas)
:info:checksum --->  Checksumming atlas3.8.3.tar.bz2
:debug:checksum Correct (md5) checksum for atlas3.8.3.tar.bz2
:debug:checksum Correct (sha1) checksum for atlas3.8.3.tar.bz2
:debug:checksum Correct (rmd160) checksum for atlas3.8.3.tar.bz2
:info:checksum --->  Checksumming lapack.tgz
:debug:checksum Correct (md5) checksum for lapack.tgz
:debug:checksum Correct (sha1) checksum for lapack.tgz
:debug:checksum Correct (rmd160) checksum for lapack.tgz
:msg:checksum --->  Extracting atlas
:debug:extract extract phase started at Tue Nov 16 13:31:39 CST 2010
:debug:extract Executing org.macports.extract (atlas)
:debug:patch patch phase started at Tue Nov 16 13:31:45 CST 2010
:debug:patch Executing org.macports.patch (atlas)
:msg:patch --->  Applying patches to atlas
:info:patch --->  Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/math/atlas/files/patch-ATL_AVgcc-fix.diff
:debug:patch Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3" && /usr/bin/patch -p0'
:info:patch patching file CONFIG/src/SpewMakeInc.c
:info:patch --->  Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/math/atlas/files/patch-archinfo_freebsd.c.diff
:debug:patch Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3" && /usr/bin/patch -p0'
:info:patch patching file CONFIG/src/backend/archinfo_freebsd.c
:info:patch --->  Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/math/atlas/files/patch-SpewMakeInc.c.diff
:debug:patch Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3" && /usr/bin/patch -p0'
:info:patch patching file CONFIG/src/SpewMakeInc.c
:debug:patch Executing proc-post-org.macports.patch-patch-0
:msg:patch --->  Configuring atlas
:debug:patch Using compiler 'MacPorts gcc 4.4'
:debug:configure configure phase started at Tue Nov 16 13:31:45 CST 2010
:debug:configure Executing proc-pre-org.macports.configure-configure-0
:debug:configure Setting CPU Frequency for: 2400
:debug:configure performing fake configure of atlas for optimized lapack
:debug:configure Clean out old temp directory if exists
:debug:configure Assembled Command: '../configure -C xc /opt/local/bin/gcc-mp-4.4 -C gc /opt/local/bin/gcc-mp-4.4 -C if /opt/local/bin/gfortran-mp-4.4 -C ic /opt/local/bin/gcc-mp-4.4 -C dm /opt/local/bin/gcc-mp-4.4 -C sm /opt/local/bin/gcc-mp-4.4 -C dk /opt/local/bin/gcc-mp-4.4 -C sk /opt/local/bin/gcc-mp-4.4 --cc=/opt/local/bin/gcc-mp-4.4 -b 64 -Fa alg -fPIC -D c -DPentiumCPS=2400 
:info:configure /opt/local/bin/gcc-mp-4.4 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3/temp/..//CONFIG/include  -g -w -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3/temp/..//CONFIG/src/atlconf_misc.c
:info:configure dyld: Library not loaded: /opt/local/lib/libmpfr.1.dylib
:info:configure   Referenced from: /opt/local/libexec/gcc/x86_64-apple-darwin10/4.4.5/cc1
:info:configure   Reason: image not found
:info:configure gcc-mp-4.4: Internal error: Trace/BPT trap (program cc1)
:info:configure Please submit a full bug report.
:info:configure See <http://gcc.gnu.org/bugs.html> for instructions.
:info:configure make: *** [atlconf_misc.o] Error 1
:info:configure ./xconfig -d s /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3/temp/../ -d b /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3/temp  -C xc /opt/local/bin/gcc-mp-4.4 -C gc /opt/local/bin/gcc-mp-4.4 -C if /opt/local/bin/gfortran-mp-4.4 -C ic /opt/local/bin/gcc-mp-4.4 -C dm /opt/local/bin/gcc-mp-4.4 -C sm /opt/local/bin/gcc-mp-4.4 -C dk /opt/local/bin/gcc-mp-4.4 -C sk /opt/local/bin/gcc-mp-4.4 -b 64 -Fa alg -fPIC -D c -DPentiumCPS=2400
:info:configure /bin/sh: line 1: ./xconfig: No such file or directory
:info:configure xconfig exited with 127
:info:configure shell command "cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3/temp &&  ../configure -C xc /opt/local/bin/gcc-mp-4.4 -C gc /opt/local/bin/gcc-mp-4.4 -C if /opt/local/bin/gfortran-mp-4.4 -C ic /opt/local/bin/gcc-mp-4.4 -C dm /opt/local/bin/gcc-mp-4.4 -C sm /opt/local/bin/gcc-mp-4.4 -C dk /opt/local/bin/gcc-mp-4.4 -C sk /opt/local/bin/gcc-mp-4.4 --cc=/opt/local/bin/gcc-mp-4.4 -b 64 -Fa alg -fPIC -D c -DPentiumCPS=2400 " returned error 127
:error:configure Target org.macports.configure returned: shell command failed (see log for details)
:debug:configure Backtrace: shell command failed (see log for details)
    while executing
"$pre $targetname"
:info:configure Warning: the following items did not execute (for atlas): org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install
:notice:configure Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log