| 1 | # $Id: Portfile 72789 2010-10-26 22:28:44Z ryandesign@macports.org $ |
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| 2 | |
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| 3 | PortSystem 1.0 |
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| 4 | |
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| 5 | name cufflinks |
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| 6 | version 0.9.3 |
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| 7 | categories science biology |
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| 8 | platforms darwin |
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| 9 | maintainers gmail.com:haroldpimentel |
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| 10 | license Boost |
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| 11 | |
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| 12 | description Cufflinks assembles transcripts, estimates their abundances,\ |
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| 13 | and tests for differential expression and regulation in RNA-Seq samples. |
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| 14 | |
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| 15 | long_description Cufflinks assembles transcripts, estimates their abundances, \ |
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| 16 | and tests for differential expression and regulation in RNA-Seq \ |
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| 17 | samples. It accepts aligned RNA-Seq reads and assembles the \ |
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| 18 | alignments into a parsimonious set of transcripts. \ |
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| 19 | Cufflinks then estimates the relative abundances of these \ |
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| 20 | transcripts based on how many reads support each one. |
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| 21 | |
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| 22 | homepage http://cufflinks.cbcb.umd.edu/ |
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| 23 | master_sites ${homepage}downloads |
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| 24 | |
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| 25 | checksums sha1 172398c87bd5fb55ccea1d545769990e94a17e1e\ |
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| 26 | rmd160 9933360dd3b8fb32072a11521ec6d8be2077970b |
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| 27 | |
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| 28 | depends_lib port:zlib \ |
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| 29 | port:samtools \ |
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| 30 | port:boost |
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| 31 | |
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| 32 | # samtools is not universal |
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| 33 | universal_variant no |
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| 34 | |
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| 35 | post-destroot { |
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| 36 | xinstall -d ${destroot}${prefix}/share/doc/${name} |
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| 37 | xinstall -m 644 -W ${worksrcpath} \ |
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| 38 | AUTHORS \ |
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| 39 | LICENSE \ |
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| 40 | README \ |
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| 41 | ${destroot}${prefix}/share/doc/${name} |
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| 42 | } |
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