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Ticket #29345: pymol_main.log

File pymol_main.log, 72.9 KB (added by michelle.lynn.gill@…, 14 years ago)

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1	version:1
2	:msg:clean ---> Computing dependencies for pymol:info:clean .:debug:clean Searching for dependency: subversion
3	:debug:clean Didn't find receipt, going to depspec regex for: subversion
4	:debug:clean Found Dependency: path: /usr/bin filename: svn regex: ^svn$
5	:debug:clean Found Dependency: path: /usr/bin filename: svn regex: ^svn$
6	:debug:clean Searching for dependency: freetype
7	:debug:clean Found Dependency: receipt exists for freetype
8	:debug:clean Searching for dependency: libpng
9	:debug:clean Found Dependency: receipt exists for libpng
10	:debug:clean Searching for dependency: python26
11	:debug:clean Found Dependency: receipt exists for python26
12	:debug:clean Searching for dependency: py26-pmw
13	:debug:clean Found Dependency: receipt exists for py26-pmw
14	:debug:clean Searching for dependency: py26-numeric
15	:debug:clean Found Dependency: receipt exists for py26-numeric
16	:debug:clean Searching for dependency: mesa
17	:debug:clean Found Dependency: receipt exists for mesa
18	:debug:clean Searching for dependency: glew
19	:debug:clean Found Dependency: receipt exists for glew
20	:debug:clean Searching for dependency: py26-tkinter
21	:debug:clean Found Dependency: receipt exists for py26-tkinter
22	:debug:clean Searching for dependency: gcc44
23	:debug:clean Found Dependency: receipt exists for gcc44
24	:debug:clean Searching for dependency: xdpyinfo
25	:debug:clean Found Dependency: receipt exists for xdpyinfo
26	:msg:clean
27	:debug:main Executing org.macports.main (pymol)
28	:msg:main ---> Fetching pymol
29	:debug:fetch fetch phase started at Mon May 2 08:21:32 EDT 2011
30	:debug:fetch Executing org.macports.fetch (pymol)
31	:debug:fetch Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
32	:debug:fetch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work" && /usr/bin/svn --non-interactive --trust-server-cert export https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol@3945'
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40	:info:fetch A pymol/configure
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45	:info:fetch A pymol/ov/src/OVContext.h
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50	:info:fetch A pymol/ov/src/OVOneToAny.h
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52	:info:fetch A pymol/ov/src/OVLexicon.h
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68	:info:fetch A pymol/AUTHORS
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184	:info:fetch A pymol/modules/pmg_tk/startup/apbs_tools.py
185	:info:fetch A pymol/modules/pmg_tk/Setting.py
186	:info:fetch A pymol/modules/pmg_tk/__init__.py
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207	:info:fetch A pymol/modules/cealign
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458	:info:fetch A pymol/data/chempy/fragments/napthylene.pkl
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460	:info:fetch A pymol/data/chempy/fragments/cyclobutane.pkl
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518	:info:fetch A pymol/data/chempy/fragments/benzocycloheptane.pkl
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520	:info:fetch A pymol/data/chempy/fragments/ethylene.pkl
521	:info:fetch A pymol/data/chempy/fragments/ct_glu.pkl
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527	:info:fetch A pymol/data/chempy/fragments/ct_pro.pkl
528	:info:fetch A pymol/data/chempy/fragments/benzene.pkl
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560	:info:fetch A pymol/data/chempy/water.pdb
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581	:info:fetch A pymol/data/chempy/tinker/parm_simple.inp
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647	:info:fetch A pymol/test/inp/C0181embed.pml
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649	:info:fetch A pymol/test/inp/C1080isomore.pml
650	:info:fetch A pymol/test/inp/C1070exporting.pml
651	:info:fetch A pymol/test/inp/C1010helping.pml
652	:info:fetch A pymol/test/inp/C0025mol.pml
653	:info:fetch A pymol/test/inp/C0500misc.pml
654	:info:fetch A pymol/test/inp/U01.pml
655	:info:fetch A pymol/test/inp/C0140iterate.pml
656	:info:fetch A pymol/test/inp/M0051session.pml
657	:info:fetch A pymol/test/inp/T04.py
658	:info:fetch A pymol/test/inp/C1100do.py
659	:info:fetch A pymol/test/inp/C1050fitting.py
660	:info:fetch A pymol/test/inp/C0700odd.pml
661	:info:fetch A pymol/test/inp/C1095slice.pml
662	:info:fetch A pymol/test/inp/B01.py
663	:info:fetch A pymol/test/inp/B11.py
664	:info:fetch A pymol/test/inp/C0106order.pml
665	:info:fetch A pymol/test/inp/C0001quit.pml
666	:info:fetch A pymol/test/inp/B05.py
667	:info:fetch A pymol/test/inp/B09.py
668	:info:fetch A pymol/test/inp/C1040editing.pml
669	:info:fetch A pymol/test/inp/C0202help_python.pml
670	:info:fetch A pymol/test/inp/C0070rep.pml
671	:info:fetch A pymol/test/inp/M0050session.pml
672	:info:fetch A pymol/test/inp/T03.py
673	:info:fetch A pymol/test/inp/C0010hello.pml
674	:info:fetch A pymol/test/inp/C1000viewing.pml
675	:info:fetch A pymol/test/inp/M0002start.pml
676	:info:fetch A pymol/test/inp/M0030scene.pml
677	:info:fetch A pymol/test/inp/C1110matrix_mode.pml
678	:info:fetch A pymol/test/inp/B10.py
679	:info:fetch A pymol/test/inp/M0040do.pml
680	:info:fetch A pymol/test/inp/B04.py
681	:info:fetch A pymol/test/inp/L0030isomesh.pml
682	:info:fetch A pymol/test/dat
683	:info:fetch A pymol/test/dat/small03.mol2
684	:info:fetch A pymol/test/dat/helix_amber.pdb
685	:info:fetch A pymol/test/dat/water.pdb
686	:info:fetch A pymol/test/dat/tiny.pdb
687	:info:fetch A pymol/test/dat/3al1.r3d
688	:info:fetch A pymol/test/dat/il2.pdb
689	:info:fetch A pymol/test/dat/pept.pkl
690	:info:fetch A pymol/test/dat/small01.mol
691	:info:fetch A pymol/test/dat/pept.r3d
692	:info:fetch A pymol/test/dat/ligs3d.sdf
693	:info:fetch A pymol/test/dat/3al1.pdb
694	:info:fetch A pymol/test/dat/names.pdb
695	:info:fetch A pymol/test/dat/embed01.p1m
696	:info:fetch A pymol/test/dat/1tii.pdb
697	:info:fetch A pymol/test/dat/embed02.p1m
698	:info:fetch A pymol/test/dat/odd01.pdb
699	:info:fetch A pymol/test/dat/embed03.p1m
700	:info:fetch A pymol/test/dat/pept.pdb
701	:info:fetch A pymol/test/dat/odd02.pdb
702	:info:fetch A pymol/test/dat/embed04.p1m
703	:info:fetch A pymol/test/dat/embed05.p1m
704	:info:fetch A pymol/test/dat/embed06.p1m
705	:info:fetch A pymol/test/dat/small02.pdb
706	:info:fetch A pymol/test/ref
707	:info:fetch A pymol/test/ref/C0025mol.log
708	:info:fetch A pymol/test/ref/C0500misc.log
709	:info:fetch A pymol/test/ref/C0700odd.1.pdb
710	:info:fetch A pymol/test/ref/C0700odd.2.pdb
711	:info:fetch A pymol/test/ref/U01.log
712	:info:fetch A pymol/test/ref/C0140iterate.log
713	:info:fetch A pymol/test/ref/C0700odd.3.pdb
714	:info:fetch A pymol/test/ref/M0051session.log
715	:info:fetch A pymol/test/ref/C0700odd.4.pdb
716	:info:fetch A pymol/test/ref/C2000returns.log
717	:info:fetch A pymol/test/ref/C0700odd.5.pdb
718	:info:fetch A pymol/test/ref/C0700odd.6.pdb
719	:info:fetch A pymol/test/ref/C0700odd.7.pdb
720	:info:fetch A pymol/test/ref/C0700odd.8.pdb
721	:info:fetch A pymol/test/ref/C0700odd.9.pdb
722	:info:fetch A pymol/test/ref/C1050fitting.log
723	:info:fetch A pymol/test/ref/C0700odd.log
724	:info:fetch A pymol/test/ref/C1095slice.log
725	:info:fetch A pymol/test/ref/C0700odd.A.pdb
726	:info:fetch A pymol/test/ref/C0700odd.B.pdb
727	:info:fetch A pymol/test/ref/C0700odd.C.pdb
728	:info:fetch A pymol/test/ref/C0106order.log
729	:info:fetch A pymol/test/ref/C0700odd.D.pdb
730	:info:fetch A pymol/test/ref/C0001quit.log
731	:info:fetch A pymol/test/ref/C0700odd.E.pdb
732	:info:fetch A pymol/test/ref/C0700odd.F.pdb
733	:info:fetch A pymol/test/ref/C1040editing.log
734	:info:fetch A pymol/test/ref/C0070rep.log
735	:info:fetch A pymol/test/ref/C0202help_python.log
736	:info:fetch A pymol/test/ref/C1060controlling.log
737	:info:fetch A pymol/test/ref/M0050session.log
738	:info:fetch A pymol/test/ref/C0010hello.log
739	:info:fetch A pymol/test/ref/M0002start.log
740	:info:fetch A pymol/test/ref/C1000viewing.log
741	:info:fetch A pymol/test/ref/M0030scene.log
742	:info:fetch A pymol/test/ref/C1110matrix_mode.log
743	:info:fetch A pymol/test/ref/M0040do.log
744	:info:fetch A pymol/test/ref/L0030isomesh.log
745	:info:fetch A pymol/test/ref/C0300session.log
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747	:info:fetch A pymol/test/ref/M0010load.log
748	:info:fetch A pymol/test/ref/C0201extend.log
749	:info:fetch A pymol/test/ref/M0025view.log
750	:info:fetch A pymol/test/ref/C0740multipdb.log
751	:info:fetch A pymol/test/ref/C0080create.1.pdb
752	:info:fetch A pymol/test/ref/L0010ccp4read.log
753	:info:fetch A pymol/test/ref/C0050multi.log
754	:info:fetch A pymol/test/ref/C0080create.2.pdb
755	:info:fetch A pymol/test/ref/C0150alter.1.pdb
756	:info:fetch A pymol/test/ref/T01.log
757	:info:fetch A pymol/test/ref/M0001new.log
758	:info:fetch A pymol/test/ref/C1100do.log
759	:info:fetch A pymol/test/ref/C0700.odd.G.pdb
760	:info:fetch A pymol/test/ref/M0053session.log
761	:info:fetch A pymol/test/ref/C0170scene.log
762	:info:fetch A pymol/test/ref/C0700.odd.H.pdb
763	:info:fetch A pymol/test/ref/M0020multi.log
764	:info:fetch A pymol/test/ref/C1020querying.log
765	:info:fetch A pymol/test/ref/C0060delete.log
766	:info:fetch A pymol/test/ref/C0105names.log
767	:info:fetch A pymol/test/ref/C1300extras.log
768	:info:fetch A pymol/test/ref/C0080create.log
769	:info:fetch A pymol/test/ref/C0150alter.log
770	:info:fetch A pymol/test/ref/C0800matrices.log
771	:info:fetch A pymol/test/ref/C0100select.log
772	:info:fetch A pymol/test/ref/L0100isomisc.log
773	:info:fetch A pymol/test/ref/C0600util.log
774	:info:fetch A pymol/test/ref/C1035wildcards.log
775	:info:fetch A pymol/test/ref/C0180embed.log
776	:info:fetch A pymol/test/ref/C1200matrix_maps.log
777	:info:fetch A pymol/test/ref/C0030pkl.log
778	:info:fetch A pymol/test/ref/C0021pdbstr.log
779	:info:fetch A pymol/test/ref/M0052session.log
780	:info:fetch A pymol/test/ref/L0040isomesh2.log
781	:info:fetch A pymol/test/ref/C0020pdb.log
782	:info:fetch A pymol/test/ref/M0021multi.log
783	:info:fetch A pymol/test/ref/L0200electro.log
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785	:info:fetch A pymol/test/ref/C1090coulomb.log
786	:info:fetch A pymol/test/ref/L0020xplorread.log
787	:info:fetch A pymol/test/ref/C0030pkl.pdb
788	:info:fetch A pymol/test/ref/C1030selecting.log
789	:info:fetch A pymol/test/ref/M0041do.log
790	:info:fetch A pymol/test/ref/C0027mol2.log
791	:info:fetch A pymol/test/ref/C0026sdf.log
792	:info:fetch A pymol/test/ref/C1080isomore.log
793	:info:fetch A pymol/test/ref/C0160get.log
794	:info:fetch A pymol/test/ref/C0181embed.log
795	:info:fetch A pymol/test/ref/C1070exporting.log
796	:info:fetch A pymol/test/ref/C1010helping.log
797	:info:fetch A pymol/test/ref/C0020pdb.pdb
798	:info:fetch A pymol/test/README
799	:info:fetch A pymol/test/vdiff
800	:info:fetch A pymol/Makefile.delsci
801	:info:fetch A pymol/LICENSE
802	:info:fetch A pymol/PACKAGING
803	:info:fetch A pymol/setup.py
804	:info:fetch A pymol/ChangeLog
805	:info:fetch A pymol/layer0
806	:info:fetch A pymol/layer0/Makefile.in
807	:info:fetch A pymol/layer0/os_types.h
808	:info:fetch A pymol/layer0/Word.c
809	:info:fetch A pymol/layer0/Word.h
810	:info:fetch A pymol/layer0/Deferred.c
811	:info:fetch A pymol/layer0/Feedback.c
812	:info:fetch A pymol/layer0/Deferred.h
813	:info:fetch A pymol/layer0/SphereData.h
814	:info:fetch A pymol/layer0/Feedback.h
815	:info:fetch A pymol/layer0/Raw.c
816	:info:fetch A pymol/layer0/Block.c
817	:info:fetch A pymol/layer0/Version.h
818	:info:fetch A pymol/layer0/MemoryCache.c
819	:info:fetch A pymol/layer0/Makefile.delsci
820	:info:fetch A pymol/layer0/Raw.h
821	:info:fetch A pymol/layer0/Block.h
822	:info:fetch A pymol/layer0/Texture.c
823	:info:fetch A pymol/layer0/os_std.h
824	:info:fetch A pymol/layer0/MemoryCache.h
825	:info:fetch A pymol/layer0/os_gl.c
826	:info:fetch A pymol/layer0/Triangle.c
827	:info:fetch A pymol/layer0/Texture.h
828	:info:fetch A pymol/layer0/os_gl.h
829	:info:fetch A pymol/layer0/PyMOLGlobals.h
830	:info:fetch A pymol/layer0/Triangle.h
831	:info:fetch A pymol/layer0/os_predef.h
832	:info:fetch A pymol/layer0/ShaderMgr.c
833	:info:fetch A pymol/layer0/ShaderMgr.h
834	:info:fetch A pymol/layer0/PyMOLOptions.h
835	:info:fetch A pymol/layer0/os_proprietary.h
836	:info:fetch A pymol/layer0/os_python.h
837	:info:fetch A pymol/layer0/Err.c
838	:info:fetch A pymol/layer0/os_unix.h
839	:info:fetch A pymol/layer0/Isosurf.c
840	:info:fetch A pymol/layer0/Match.c
841	:info:fetch A pymol/layer0/Tetsurf.c
842	:info:fetch A pymol/layer0/Err.h
843	:info:fetch A pymol/layer0/Isosurf.h
844	:info:fetch A pymol/layer0/Match.h
845	:info:fetch A pymol/layer0/Tetsurf.h
846	:info:fetch A pymol/layer0/Vector.c
847	:info:fetch A pymol/layer0/OOMac.h
848	:info:fetch A pymol/layer0/os_time.h
849	:info:fetch A pymol/layer0/Matrix.c
850	:info:fetch A pymol/layer0/Shader.c
851	:info:fetch A pymol/layer0/Vector.h
852	:info:fetch A pymol/layer0/Matrix.h
853	:info:fetch A pymol/layer0/Parse.c
854	:info:fetch A pymol/layer0/Shader.h
855	:info:fetch A pymol/layer0/Map.c
856	:info:fetch A pymol/layer0/MemoryDebug.c
857	:info:fetch A pymol/layer0/Parse.h
858	:info:fetch A pymol/layer0/Map.h
859	:info:fetch A pymol/layer0/Field.c
860	:info:fetch A pymol/layer0/MemoryDebug.h
861	:info:fetch A pymol/layer0/Queue.c
862	:info:fetch A pymol/layer0/ListMacros.h
863	:info:fetch A pymol/layer0/Sphere.c
864	:info:fetch A pymol/layer0/Field.h
865	:info:fetch A pymol/layer0/Queue.h
866	:info:fetch A pymol/layer0/MyPNG.c
867	:info:fetch A pymol/layer0/Sphere.h
868	:info:fetch A pymol/layer0/Tracker.c
869	:info:fetch A pymol/layer0/Pixmap.c
870	:info:fetch A pymol/layer0/MyPNG.h
871	:info:fetch A pymol/layer0/Tracker.h
872	:info:fetch A pymol/layer0/Pixmap.h
873	:info:fetch A pymol/layer0/os_limits.h
874	:info:fetch A pymol/layer0/Util.c
875	:info:fetch A pymol/layer0/Base.h
876	:info:fetch A pymol/layer0/Crystal.c
877	:info:fetch A pymol/layer0/Util.h
878	:info:fetch A pymol/layer0/Debug.c
879	:info:fetch A pymol/layer0/Crystal.h
880	:info:fetch A pymol/layer0/Makefile.am
881	:info:fetch A pymol/layer0/Debug.h
882	:info:fetch A pymol/README
883	:info:fetch A pymol/layer1
884	:info:fetch A pymol/layer1/Makefile.in
885	:info:fetch A pymol/layer1/Basis.c
886	:info:fetch A pymol/layer1/Basis.h
887	:info:fetch A pymol/layer1/CGO.c
888	:info:fetch A pymol/layer1/CGO.h
889	:info:fetch A pymol/layer1/Setting.c
890	:info:fetch A pymol/layer1/Color.c
891	:info:fetch A pymol/layer1/Movie.c
892	:info:fetch A pymol/layer1/Setting.h
893	:info:fetch A pymol/layer1/Color.h
894	:info:fetch A pymol/layer1/Movie.h
895	:info:fetch A pymol/layer1/FontGLUT8x13.c
896	:info:fetch A pymol/layer1/Seq.c
897	:info:fetch A pymol/layer1/Ortho.c
898	:info:fetch A pymol/layer1/Ray.c
899	:info:fetch A pymol/layer1/Seq.h
900	:info:fetch A pymol/layer1/Pop.c
901	:info:fetch A pymol/layer1/Makefile.delsci
902	:info:fetch A pymol/layer1/P.c
903	:info:fetch A pymol/layer1/Ray.h
904	:info:fetch A pymol/layer1/Ortho.h
905	:info:fetch A pymol/layer1/Wizard.c
906	:info:fetch A pymol/layer1/Pop.h
907	:info:fetch A pymol/layer1/P.h
908	:info:fetch A pymol/layer1/Wizard.h
909	:info:fetch A pymol/layer1/Extrude.c
910	:info:fetch A pymol/layer1/Extrude.h
911	:info:fetch A pymol/layer1/FontGLUT9x15.c
912	:info:fetch A pymol/layer1/FontGLUTHel10.c
913	:info:fetch A pymol/layer1/FontGLUTHel12.c
914	:info:fetch A pymol/layer1/ButMode.c
915	:info:fetch A pymol/layer1/TypeFace.c
916	:info:fetch A pymol/layer1/FontGLUTHel18.c
917	:info:fetch A pymol/layer1/ButMode.h
918	:info:fetch A pymol/layer1/TypeFace.h
919	:info:fetch A pymol/layer1/FontType.c
920	:info:fetch A pymol/layer1/View.c
921	:info:fetch A pymol/layer1/FontTTF2.h
922	:info:fetch A pymol/layer1/FontType.h
923	:info:fetch A pymol/layer1/Shaker.c
924	:info:fetch A pymol/layer1/View.h
925	:info:fetch A pymol/layer1/Shaker.h
926	:info:fetch A pymol/layer1/PConv.c
927	:info:fetch A pymol/layer1/Rep.c
928	:info:fetch A pymol/layer1/PyMOLObject.c
929	:info:fetch A pymol/layer1/Symmetry.c
930	:info:fetch A pymol/layer1/PConv.h
931	:info:fetch A pymol/layer1/Rep.h
932	:info:fetch A pymol/layer1/Character.c
933	:info:fetch A pymol/layer1/PyMOLObject.h
934	:info:fetch A pymol/layer1/Scene.c
935	:info:fetch A pymol/layer1/Symmetry.h
936	:info:fetch A pymol/layer1/Character.h
937	:info:fetch A pymol/layer1/FontGLUT.c
938	:info:fetch A pymol/layer1/Scene.h
939	:info:fetch A pymol/layer1/Font.c
940	:info:fetch A pymol/layer1/FontGLUT.h
941	:info:fetch A pymol/layer1/Font.h
942	:info:fetch A pymol/layer1/Control.c
943	:info:fetch A pymol/layer1/ScrollBar.c
944	:info:fetch A pymol/layer1/Text.c
945	:info:fetch A pymol/layer1/Control.h
946	:info:fetch A pymol/layer1/Makefile.am
947	:info:fetch A pymol/layer1/ScrollBar.h
948	:info:fetch A pymol/layer1/Text.h
949	:info:fetch A pymol/layer1/FontTTF.h
950	:info:fetch A pymol/layer2
951	:info:fetch A pymol/layer2/ObjectVolume.c
952	:info:fetch A pymol/layer2/ObjectCGO.c
953	:info:fetch A pymol/layer2/Makefile.in
954	:info:fetch A pymol/layer2/RepCylBond.c
955	:info:fetch A pymol/layer2/ObjectVolume.h
956	:info:fetch A pymol/layer2/ObjectCGO.h
957	:info:fetch A pymol/layer2/RepCylBond.h
958	:info:fetch A pymol/layer2/AtomInfo.c
959	:info:fetch A pymol/layer2/DistSet.c
960	:info:fetch A pymol/layer2/ObjectSurface.c
961	:info:fetch A pymol/layer2/AtomInfo.h
962	:info:fetch A pymol/layer2/RepDihedral.c
963	:info:fetch A pymol/layer2/DistSet.h
964	:info:fetch A pymol/layer2/ObjectSurface.h
965	:info:fetch A pymol/layer2/ObjectSlice.c
966	:info:fetch A pymol/layer2/RepLabel.c
967	:info:fetch A pymol/layer2/RepDihedral.h
968	:info:fetch A pymol/layer2/RepLabel.h
969	:info:fetch A pymol/layer2/ObjectSlice.h
970	:info:fetch A pymol/layer2/RepSphere.c
971	:info:fetch A pymol/layer2/Makefile.delsci
972	:info:fetch A pymol/layer2/SculptCache.c
973	:info:fetch A pymol/layer2/ObjectGadgetRamp.c
974	:info:fetch A pymol/layer2/RepSphere.h
975	:info:fetch A pymol/layer2/RepMesh.c
976	:info:fetch A pymol/layer2/SculptCache.h
977	:info:fetch A pymol/layer2/ObjectGadgetRamp.h
978	:info:fetch A pymol/layer2/RepMesh.h
979	:info:fetch A pymol/layer2/RepDistDash.c
980	:info:fetch A pymol/layer2/ObjectMolecule2.c
981	:info:fetch A pymol/layer2/RepDistDash.h
982	:info:fetch A pymol/layer2/ObjectCallback.c
983	:info:fetch A pymol/layer2/ObjectCallback.h
984	:info:fetch A pymol/layer2/RepEllipsoid.c
985	:info:fetch A pymol/layer2/VFont.c
986	:info:fetch A pymol/layer2/RepDot.c
987	:info:fetch A pymol/layer2/RepSurface.c
988	:info:fetch A pymol/layer2/RepEllipsoid.h
989	:info:fetch A pymol/layer2/VFont.h
990	:info:fetch A pymol/layer2/RepDot.h
991	:info:fetch A pymol/layer2/RepSurface.h
992	:info:fetch A pymol/layer2/ObjectMap.c
993	:info:fetch A pymol/layer2/ObjectMap.h
994	:info:fetch A pymol/layer2/Sculpt.c
995	:info:fetch A pymol/layer2/RepDistLabel.c
996	:info:fetch A pymol/layer2/RepCartoon.c
997	:info:fetch A pymol/layer2/RepNonbonded.c
998	:info:fetch A pymol/layer2/Sculpt.h
999	:info:fetch A pymol/layer2/RepDistLabel.h
1000	:info:fetch A pymol/layer2/RepWireBond.c
1001	:info:fetch A pymol/layer2/RepCartoon.h
1002	:info:fetch A pymol/layer2/CoordSet.c
1003	:info:fetch A pymol/layer2/RepNonbonded.h
1004	:info:fetch A pymol/layer2/RepRibbon.c
1005	:info:fetch A pymol/layer2/RepNonbondedSphere.c
1006	:info:fetch A pymol/layer2/RepWireBond.h
1007	:info:fetch A pymol/layer2/CoordSet.h
1008	:info:fetch A pymol/layer2/RepRibbon.h
1009	:info:fetch A pymol/layer2/RepNonbondedSphere.h
1010	:info:fetch A pymol/layer2/ObjectDist.c
1011	:info:fetch A pymol/layer2/ObjectMolecule.c
1012	:info:fetch A pymol/layer2/RepAngle.c
1013	:info:fetch A pymol/layer2/ObjectDist.h
1014	:info:fetch A pymol/layer2/ObjectMolecule.h
1015	:info:fetch A pymol/layer2/RepAngle.h
1016	:info:fetch A pymol/layer2/ObjectAlignment.c
1017	:info:fetch A pymol/layer2/GadgetSet.c
1018	:info:fetch A pymol/layer2/ObjectAlignment.h
1019	:info:fetch A pymol/layer2/GadgetSet.h
1020	:info:fetch A pymol/layer2/ObjectGadget.c
1021	:info:fetch A pymol/layer2/ObjectGroup.c
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1337	:info:fetch A pymol/examples/devel/membrane.py
1338	:info:fetch A pymol/examples/devel/cgo_plane.py
1339	:info:fetch A pymol/examples/chempy
1340	:info:fetch A pymol/examples/chempy/generate_mmff.py
1341	:info:fetch A pymol/examples/chempy/generate_amber.py
1342	:info:fetch A pymol/examples/cookbook
1343	:info:fetch A pymol/examples/cookbook/build_peptide.py
1344	:info:fetch A pymol/examples/cookbook/dali.py
1345	:info:fetch A pymol/examples/cookbook/ss_xfer.pml
1346	:info:fetch A pymol/examples/cookbook/contact.pml
1347	:info:fetch A pymol/examples/cookbook/packing.pml
1348	:info:fetch A pymol/examples/cookbook/seq_match_sele.pml
1349	:info:fetch A pymol/examples/cookbook/multiclip_ray.pml
1350	:info:fetch A pymol/examples/cookbook/packsurf.pml
1351	:info:fetch A pymol/examples/cookbook/density.pml
1352	:info:fetch A pymol/examples/cookbook/groel_es.pml
1353	:info:fetch A pymol/examples/cookbook/ribosome.pml
1354	:info:fetch A pymol/examples/cookbook/area_diff.pml
1355	:info:fetch A pymol/examples/cookbook/scenes2movie.pml
1356	:info:fetch A pymol/examples/cookbook/symsph.py
1357	:info:fetch A pymol/examples/cookbook/ref_frame.pml
1358	:info:fetch A pymol/examples/launching
1359	:info:fetch A pymol/examples/launching/launch.py
1360	:info:fetch A pymol/examples/launching/launch_viewer1.py
1361	:info:fetch A pymol/examples/launching/launch_viewer2.py
1362	:info:fetch A pymol/examples/launching/launch_demo.py
1363	:info:fetch A pymol/examples/launching/launch_no_tk.py
1364	:info:fetch A pymol/examples/launching/README
1365	:info:fetch A pymol/examples/package
1366	:info:fetch A pymol/examples/package/redhat
1367	:info:fetch A pymol/examples/package/redhat/pymol-0.96-1.rh70.py152.spec
1368	:info:fetch A pymol/examples/package/redhat/pymol-0.96-1.rh62.py152.spec
1369	:info:fetch A pymol/examples/package/redhat/pymol-0.93-1.rh72.py21.spec
1370	:info:fetch A pymol/examples/package/redhat/pymol-0.93-1.rh80.py22.spec
1371	:info:fetch A pymol/examples/package/redhat/pymol-0.93-1.rh90.py22.spec
1372	:info:fetch A pymol/examples/package/redhat/pymol-0.93-1.rh73.py22.spec
1373	:info:fetch A pymol/examples/package/redhat/pymol-0.93-1.rh70.py152.spec
1374	:info:fetch A pymol/examples/package/redhat/pymol-0.96-1.rh72.py21.spec
1375	:info:fetch A pymol/examples/package/redhat/pymol-0.96-1.rh80.py22.spec
1376	:info:fetch A pymol/examples/package/redhat/pymol-0.93-1.rh62.py152.spec
1377	:info:fetch A pymol/examples/package/redhat/pymol-0.96-1.rh90.py22.spec
1378	:info:fetch A pymol/examples/package/redhat/pymol-0.96-1.rh73.py22.spec
1379	:info:fetch Exported revision 3945.
1380	:msg:fetch ---> Verifying checksum(s) for pymol
1381	:debug:checksum checksum phase started at Mon May 2 08:22:06 EDT 2011
1382	:debug:checksum Executing org.macports.checksum (pymol)
1383	:msg:checksum ---> Extracting pymol
1384	:debug:extract extract phase started at Mon May 2 08:22:06 EDT 2011
1385	:debug:extract Executing org.macports.extract (pymol)
1386	:debug:patch patch phase started at Mon May 2 08:22:06 EDT 2011
1387	:debug:patch Executing org.macports.patch (pymol)
1388	:msg:patch ---> Applying patches to pymol
1389	:info:patch ---> Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/pymol/files/setup_py.diff
1390	:debug:patch Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
1391	:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/pymol" && /usr/bin/patch -p0'
1392	:info:patch patching file setup.py
1393	:info:patch ---> Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/pymol/files/pymol_shell.diff
1394	:debug:patch Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
1395	:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/pymol" && /usr/bin/patch -p0'
1396	:info:patch patching file setup/pymol_macports
1397	:debug:patch Executing proc-post-org.macports.patch-patch-0
1398	:msg:patch ---> Configuring pymol
1399	:debug:patch Using compiler 'MacPorts gcc 4.4'
1400	:debug:configure configure phase started at Mon May 2 08:22:06 EDT 2011
1401	:debug:configure Executing org.macports.configure (pymol)
1402	:msg:configure ---> Building pymol
1403	:debug:build build phase started at Mon May 2 08:22:06 EDT 2011
1404	:debug:build Executing proc-pre-org.macports.build-build-0
1405	:debug:build Executing org.macports.build (pymol)
1406	:debug:build port disallows a parallel build
1407	:debug:build Environment: CFLAGS='-m64' CXXFLAGS='-m64' CPATH='/opt/local/include' MACOSX_DEPLOYMENT_TARGET='10.6' LIBRARY_PATH='/opt/local/lib' F90FLAGS='-m64' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/.CC_PRINT_OPTIONS' LDFLAGS='' FCFLAGS='-m64' OBJCFLAGS='-m64' FFLAGS='-m64' CC_PRINT_OPTIONS='YES'
1408	:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py --no-user-cfg build CC="/opt/local/bin/gcc-mp-4.4" CXX="/opt/local/bin/g++-mp-4.4"'
1409	:info:build invalid command name 'CC=/opt/local/bin/gcc-mp-4.4'
1410	:info:build shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/work/pymol" && /opt/local/Library/Frameworks/Python.framework/Versions/2.6/bin/python2.6 setup.py --no-user-cfg build CC="/opt/local/bin/gcc-mp-4.4" CXX="/opt/local/bin/g++-mp-4.4" " returned error 1
1411	:error:build Target org.macports.build returned: shell command failed (see log for details)
1412	:debug:build Backtrace: shell command failed (see log for details)
1413	while executing
1414	"command_exec build"
1415	(procedure "portbuild::build_main" line 8)
1416	invoked from within
1417	"$procedure $targetname"
1418	:info:build Warning: the following items did not execute (for pymol): org.macports.destroot org.macports.build
1419	:notice:build Log for pymol is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_pymol/main.log

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