Ticket #30254: make.log

File make.log, 50.8 KB (added by chris@…, 13 years ago)
Line 
1sh-3.2# /usr/bin/make -j4 -w all GCC=/Developer/usr/bin/llvm-gcc-4.2 GPP=/Developer/usr/bin/llvm-g++-4.2 CPPreal=/Developer/usr/bin/llvm-cpp-4.2
2make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
3All tools needed for ARB compilation have been located.
4GCC version check:
5  - Your version is '4.2.1'
6  - Supported gcc version '4.2.1' detected - fine!
7
8/usr/bin/make check_same_GCC_VERSION
9make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
10/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SOURCE_TOOLS/check_same_gcc_version.pl 4.2.1
11make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
12Your setup seems to be ok.
13/usr/bin/make links
14make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
15make[1]: Nothing to be done for `links'.
16make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
17/usr/bin/make com
18make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
19-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
20make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
21make[2]: Nothing to be done for `dummy.a'.
22make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
23-------------------------------------------------------------------------------- Make everything in AISC
24make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC'
25make[2]: Nothing to be done for `dummy.a'.
26make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC'
27-------------------------------------------------------------------------------- Make everything in NAMES_COM
28make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
29make[2]: `server.a' is up to date.
30make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
31-------------------------------------------------------------------------------- Make everything in PROBE_COM
32make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
33make[2]: `server.a' is up to date.
34make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
35make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
36/usr/bin/make arb
37make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
38(cd lib;/usr/bin/make all)
39make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/lib'
40test -e arb_tcp.dat || cp -p arb_tcp_org.dat arb_tcp.dat
41test -L nas && echo "lib/nas is a link - skipped" || \
42                (cd nas;/usr/bin/make all)
43make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/lib/nas'
44rm -f *%
45make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/lib/nas'
46make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/lib'
47/usr/bin/make arbbasic2
48make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
49-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
50make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
51make[3]: Nothing to be done for `dummy.a'.
52make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
53-------------------------------------------------------------------------------- Make everything in AISC
54make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC'
55make[3]: Nothing to be done for `dummy.a'.
56make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC'
57-------------------------------------------------------------------------------- Make everything in GL
58make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL'
59make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glpng'
60make[4]: `libglpng_arb.a' is up to date.
61make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glpng'
62make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glAW'
63make[4]: `libglAW.a' is up to date.
64make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glAW'
65make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL'
66-------------------------------------------------------------------------------- Make everything in NAMES_COM
67make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
68make[3]: `server.a' is up to date.
69make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
70-------------------------------------------------------------------------------- Make everything in PROBE_COM
71make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
72make[3]: `server.a' is up to date.
73make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
74-------------------------------------------------------------------------------- Make everything in NAMES_COM
75make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
76make[3]: `server.a' is up to date.
77make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
78/usr/bin/make SL/SL.dummy
79-------------------------------------------------------------------------------- Make everything in TEMPLATES
80make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/TEMPLATES'
81../SOURCE_TOOLS/build_info.pl
82make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/TEMPLATES'
83make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
84-------------------------------------------------------------------------------- Make everything in SL
85make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL'
86make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/TREE_READ'
87make[5]: `TREE_READ.a' is up to date.
88make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/TREE_READ'
89E'
90make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_HELIX'
91make[5]: `AW_HELIX.a' is up to date.
92make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_HELIX'
93make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/DB_SCANNER'
94make[5]: `DB_SCANNER.a' is up to date.
95make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/DB_SCANNER'
96make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_NAME'
97make[5]: `AW_NAME.a' is up to date.
98make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_NAME'
99make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/REGEXPR'
100make[5]: `REGEXPR.a' is up to date.
101make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/REGEXPR'
102make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FILE_BUFFER'
103make[5]: `FILE_BUFFER.a' is up to date.
104make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FILE_BUFFER'
105make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FAST_ALIGNER'
106make[5]: `FAST_ALIGNER.a' is up to date.
107make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FAST_ALIGNER'
108make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL'
109make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
110make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
111/usr/bin/make arbshared arbapplications help
112make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
113-------------------------------------------------------------------------------- Make everything in ARBDBPP
114make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDBPP'
115make[3]: `libARBDBPP.a' is up to date.
116make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDBPP'
117-------------------------------------------------------------------------------- Make everything in ARBDBS
118make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDBS'
119make[3]: `libARBDB.a' is up to date.
120make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDBS'
121-------------------------------------------------------------------------------- Make everything in ARBDB2
122make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDB2'
123make[3]: `libARBDB.a' is up to date.
124make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDB2'
125-------------------------------------------------------------------------------- Make everything in ARBDB
126make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDB'
127make[3]: `libARBDB.a' is up to date.
128make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARBDB'
129/usr/bin/make -C bin all
130make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/bin'
131find . -type l -exec rm {} \;
132-------------------------------------------------------------------------------- Make everything in AWT
133make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AWT'
134make[3]: `libAWT.a' is up to date.
135make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AWT'
136-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
137make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
138make[3]: Nothing to be done for `dummy.a'.
139make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
140-------------------------------------------------------------------------------- Make everything in WINDOW
141make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/WINDOW'
142make[3]: `libAW.a' is up to date.
143make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/WINDOW'
144-------------------------------------------------------------------------------- Building prototyper
145/usr/bin/make AISC_MKPTPS/AISC_MKPTPS.dummy
146-------------------------------------------------------------------------------- Make everything in AISC
147make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC'
148make[3]: Nothing to be done for `dummy.a'.
149make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC'
150-------------------------------------------------------------------------------- Make everything in AWTI
151make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AWTI'
152make[3]: `AWTI.a' is up to date.
153make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AWTI'
154-------------------------------------------------------------------------------- Make everything in GENOM_IMPORT
155make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GENOM_IMPORT'
156make[3]: `GENOM_IMPORT.a' is up to date.
157make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GENOM_IMPORT'
158-------------------------------------------------------------------------------- Make everything in GENOM
159make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GENOM'
160make[3]: `GENOM.a' is up to date.
161make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GENOM'
162-------------------------------------------------------------------------------- Make everything in MERGE
163make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/MERGE'
164make[3]: `MERGE.a' is up to date.
165make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/MERGE'
166-------------------------------------------------------------------------------- Make everything in NTREE
167make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NTREE'
168make[3]: `NTREE.a' is up to date.
169make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NTREE'
170ln -s -f `find ../SH ../PERL_SCRIPTS -perm -100 ! -type d ! -name 'config*' -print` .
171-------------------------------------------------------------------------------- Make everything in PRIMER_DESIGN
172make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PRIMER_DESIGN'
173make[3]: `PRIMER_DESIGN.a' is up to date.
174make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PRIMER_DESIGN'
175-------------------------------------------------------------------------------- Make everything in SEQ_QUALITY
176make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SEQ_QUALITY'
177make[3]: `SEQ_QUALITY.a' is up to date.
178make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SEQ_QUALITY'
179make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/bin'
180-------------------------------------------------------------------------------- Make everything in SL/DB_SCANNER
181make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/DB_SCANNER'
182make[3]: `DB_SCANNER.a' is up to date.
183make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/DB_SCANNER'
184-------------------------------------------------------------------------------- Make everything in SERVERCNTRL
185make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SERVERCNTRL'
186make[3]: `SERVERCNTRL.a' is up to date.
187make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SERVERCNTRL'
188-------------------------------------------------------------------------------- Make everything in SL/FILE_BUFFER
189make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FILE_BUFFER'
190make[3]: `FILE_BUFFER.a' is up to date.
191make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FILE_BUFFER'
192-------------------------------------------------------------------------------- Make everything in SL/HELIX
193make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/HELIX'
194make[3]: `HELIX.a' is up to date.
195make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/HELIX'
196-------------------------------------------------------------------------------- Make everything in SL/REGEXPR
197make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/REGEXPR'
198make[3]: `REGEXPR.a' is up to date.
199make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/REGEXPR'
200-------------------------------------------------------------------------------- Make everything in SL/TREE_READ
201make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/TREE_READ'
202make[3]: `TREE_READ.a' is up to date.
203make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/TREE_READ'
204make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
205-------------------------------------------------------------------------------- Make everything in SL/TREE_WRITE
206make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/TREE_WRITE'
207make[3]: `TREE_WRITE.a' is up to date.
208make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/TREE_WRITE'
209-------------------------------------------------------------------------------- Make everything in STAT
210make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/STAT'
211make[3]: `STAT.a' is up to date.
212make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/STAT'
213-------------------------------------------------------------------------------- Make everything in XML
214make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/XML'
215make[3]: `XML.a' is up to date.
216make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/XML'
217-------------------------------------------------------------------------------- Make everything in AISC_MKPTPS
218make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
219make[4]: Nothing to be done for `AISC_MKPTPS.a'.
220make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AISC_MKPTPS'
221make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
222-------------------------------------------------------------------------------- Make everything in PARSIMONY
223make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PARSIMONY'
224make[3]: `PARSIMONY.a' is up to date.
225make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PARSIMONY'
226-------------------------------------------------------------------------------- Make everything in EDIT
227make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/EDIT'
228make[3]: `EDIT.a' is up to date.
229make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/EDIT'
230-------------------------------------------------------------------------------- Make everything in SL/AW_HELIX
231make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_HELIX'
232make[3]: `AW_HELIX.a' is up to date.
233make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_HELIX'
234-------------------------------------------------------------------------------- Make everything in WETC
235make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/WETC'
236make[3]: `WETC.a' is up to date.
237make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/WETC'
238-------------------------------------------------------------------------------- Make everything in READSEQ
239make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/READSEQ'
240make[3]: Nothing to be done for `all'.
241make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/READSEQ'
242-------------------------------------------------------------------------------- Make everything in EDIT4
243make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/EDIT4'
244make[3]: `EDIT4.a' is up to date.
245make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/EDIT4'
246-------------------------------------------------------------------------------- Make everything in ISLAND_HOPPING
247make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ISLAND_HOPPING'
248make[3]: `ISLAND_HOPPING.a' is up to date.
249make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ISLAND_HOPPING'
250-------------------------------------------------------------------------------- Make everything in SECEDIT
251make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SECEDIT'
252make[3]: `SECEDIT.a' is up to date.
253make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SECEDIT'
254-------------------------------------------------------------------------------- Make everything in SL/FAST_ALIGNER
255make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FAST_ALIGNER'
256make[3]: `FAST_ALIGNER.a' is up to date.
257make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/FAST_ALIGNER'
258-------------------------------------------------------------------------------- Make everything in RNA3D
259make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/RNA3D'
260make[3]: `RNA3D.a' is up to date.
261make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/RNA3D'
262-------------------------------------------------------------------------------- Make everything in DIST
263make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/DIST'
264make[3]: `DIST.a' is up to date.
265make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/DIST'
266-------------------------------------------------------------------------------- Make everything in GL
267make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL'
268make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glpng'
269make[4]: `libglpng_arb.a' is up to date.
270make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glpng'
271make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glAW'
272make[4]: `libglAW.a' is up to date.
273make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glAW'
274make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL'
275-------------------------------------------------------------------------------- Make everything in CONSENSUS_TREE
276make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/CONSENSUS_TREE'
277make[3]: `CONSENSUS_TREE.a' is up to date.
278make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/CONSENSUS_TREE'
279-------------------------------------------------------------------------------- Make everything in EISPACK
280make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/EISPACK'
281make[3]: `EISPACK.a' is up to date.
282make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/EISPACK'
283-------------------------------------------------------------------------------- Make everything in PHYLO
284make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PHYLO'
285make[3]: `PHYLO.a' is up to date.
286make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PHYLO'
287-------------------------------------------------------------------------------- Make everything in DBSERVER
288make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/DBSERVER'
289make[3]: `DBSERVER.a' is up to date.
290make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/DBSERVER'
291-------------------------------------------------------------------------------- Make everything in PGT
292make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PGT'
293make[3]: `PGT.a' is up to date.
294make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PGT'
295-------------------------------------------------------------------------------- Make everything in PROBE_COM
296make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
297make[3]: `server.a' is up to date.
298make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
299-------------------------------------------------------------------------------- Make everything in NAMES_COM
300make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
301make[3]: `server.a' is up to date.
302make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
303-------------------------------------------------------------------------------- Make everything in GDEHELP
304make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GDEHELP'
305make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GDEHELP'
306----------------------------------------------------------------
307Collecting documentation for external programs used in GDE menus
308make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GDEHELP'
309make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GDEHELP'
310-------------------------------------------------------------------------------- Make everything in PROBE_COM
311make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
312make[3]: `server.a' is up to date.
313make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
314-------------------- Updating shared libraries
315/usr/bin/make libs
316-------------------------------------------------------------------------------- Make everything in NAMES_COM
317make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
318make[3]: `server.a' is up to date.
319make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
320-------------------------------------------------------------------------------- Make everything in ARB_GDE
321make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARB_GDE'
322../MAKEBIN/aisc_mkpt -G -A -E -w GDE_proto.h GDE_ParseMenu.cxx GDE.cxx GDE_event.cxx GDE_arbdb_io.cxx GDE_HGLfile.cxx GDE_Genbank.cxx GDE_FileIO.cxx > GDE_proto.h.tmp
323../SOURCE_TOOLS/mv_if_diff GDE_proto.h.tmp GDE_proto.h
324GDE_proto.h did not change.
325make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/ARB_GDE'
326-------------------------------------------------------------------------------- Make everything in NAMES_COM
327make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
328make[3]: `server.a' is up to date.
329make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/NAMES_COM'
330-------------------------------------------------------------------------------- Make everything in PROBE_COM
331make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
332make[3]: `server.a' is up to date.
333make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_COM'
334-------------------------------------------------------------------------------- Make everything in AWTC
335make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AWTC'
336make[3]: `AWTC.a' is up to date.
337make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/AWTC'
338-------------------------------------------------------------------------------- Make everything in MULTI_PROBE
339make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/MULTI_PROBE'
340make[3]: `MULTI_PROBE.a' is up to date.
341make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/MULTI_PROBE'
342make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
343make[3]: Nothing to be done for `libs'.
344make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
345-------------------------------------------------------------------------------- Make everything in SL/AW_NAME
346make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_NAME'
347make[3]: `AW_NAME.a' is up to date.
348make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/SL/AW_NAME'
349-------------------- Checking bin/arb_wetc
350Target 'bin/arb_wetc' not found
351-> rebuilding bin/arb_wetc (Wed Dec 31 18:59:59 1969)
352Link bin/arb_wetc
353/Developer/usr/bin/llvm-g++-4.2   -arch x86_64   -o bin/arb_wetc -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/LIBLINK WETC/WETC.a SL/HELIX/HELIX.a XML/XML.a  -lARBDB  -lstdc++ -lAW -lAWT -L/lib -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi -lGLU -lGL -Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib
354-------------------------------------------------------------------------------- Make everything in HELP_SOURCE
355make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
356/usr/bin/make date.xsl.tmp
357---------------------------------------------------
358------------ Generating some help files:
359(cd genhelp;/usr/bin/make all)
360make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE/genhelp'
361make[4]: Nothing to be done for `all'.
362make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE/genhelp'
363mkdir -p Xml
364mkdir -p Xml/prompt
365mkdir -p ../lib/help_html
366mkdir -p ../lib/help_html/prompt
367mkdir -p ../lib/help
368mkdir -p ../lib/help/prompt
369ln: Xml/arb_help.dtd: File exists
370make[3]: [dirs] Error 1 (ignored)
371ln: Xml/prompt/arb_help.dtd: File exists
372make[3]: [dirs] Error 1 (ignored)
373make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
374cat date.xsl.header >date.xsl.tmp
375bash -c "(export LC_ALL=C;date '+%d. %b %Y')" >>date.xsl.tmp
376cat date.xsl.footer >>date.xsl.tmp
377make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
378../SOURCE_TOOLS/mv_if_diff date.xsl.tmp date.xsl
379date.xsl did not change.
380find ../lib/help_html -name "*.html" -size -1 -exec rm {} \;
381--------------------------------------------------- [old hlp 2 xml]
382time /usr/bin/make xml
383make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
384make[4]: Nothing to be done for `xml'.
385make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
386        0.08 real         0.05 user         0.00 sys
387--------------------------------------------------- [xml 2 hlp]
388time /usr/bin/make help
389make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
390make[4]: Nothing to be done for `help'.
391make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
392        0.04 real         0.03 user         0.00 sys
393/usr/bin/make ../lib/help/FORM.hlp
394make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
395make[4]: `../lib/help/FORM.hlp' is up to date.
396make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
397--------------------------------------------------- [xml 2 html]
398time /usr/bin/make html
399make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
400make[4]: Nothing to be done for `html'.
401make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
402        0.06 real         0.05 user         0.00 sys
403/usr/bin/make html_index
404make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
405make[4]: Nothing to be done for `html_index'.
406make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
407make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/HELP_SOURCE'
408ld: warning: directory not found for option '-L/lib'
409ld: library not found for -lXm
410collect2: ld returned 1 exit status
411make[2]: *** [bin/arb_wetc] Error 1
412make[2]: *** Waiting for unfinished jobs....
413-------------------- Checking bin/arb_edit4
414Target 'bin/arb_edit4' not found
415-> rebuilding bin/arb_edit4 (Wed Dec 31 18:59:59 1969)
416Link bin/arb_edit4
417/Developer/usr/bin/llvm-g++-4.2   -arch x86_64   -o bin/arb_edit4 -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/LIBLINK NAMES_COM/client.a AWTC/AWTC.a EDIT4/EDIT4.a SECEDIT/SECEDIT.a SERVERCNTRL/SERVERCNTRL.a STAT/STAT.a ARB_GDE/ARB_GDE.a ISLAND_HOPPING/ISLAND_HOPPING.a SL/FAST_ALIGNER/FAST_ALIGNER.a SL/HELIX/HELIX.a SL/AW_HELIX/AW_HELIX.a SL/AW_NAME/AW_NAME.a SL/FILE_BUFFER/FILE_BUFFER.a XML/XML.a  RNA3D/RNA3D.a -lARBDB  -lstdc++ -lAW -lAWT -L/lib -lXm -lpng -lz -lXt -lX11 -lXext -lXp -lXmu -lXi -lGLU -lGL -Wl,-dylib_file,/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib:/System/Library/Frameworks/OpenGL.framework/Versions/A/Libraries/libGL.dylib -lGL -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glAW -lglAW -lGLEW -lGLw -lglut -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/GL/glpng -lglpng_arb -lpng
418ld: warning: directory not found for option '-L/lib'
419ld: library not found for -lXm
420collect2: ld returned 1 exit status
421make[2]: *** [bin/arb_edit4] Error 1
422-------------------------------------------------------------------------------- Make everything in PROBE_DESIGN
423make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_DESIGN'
424/Developer/usr/bin/llvm-g++-4.2  -O4 -arch x86_64 -no-cpp-precomp  -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DDARWIN    -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o probe_design.o probe_design.cxx  -I. -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/INCLUDE -I/include -I/System/Library/Frameworks/OpenGL.framework/Headers -I/usr/include/krb5 -I/System/Library/Frameworks/GLUT.framework/Headers
425/Developer/usr/bin/llvm-g++-4.2  -O4 -arch x86_64 -no-cpp-precomp  -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DDARWIN    -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o SaiProbeVisualization.o SaiProbeVisualization.cxx  -I. -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/INCLUDE -I/include -I/System/Library/Frameworks/OpenGL.framework/Headers -I/usr/include/krb5 -I/System/Library/Frameworks/GLUT.framework/Headers
426/Developer/usr/bin/llvm-g++-4.2  -O4 -arch x86_64 -no-cpp-precomp  -pipe -fmessage-length=0 -funit-at-a-time -fPIC -DARB_OPENGL  -W -Wall -DNDEBUG -DARB_64  -DDARWIN    -DFAKE_VTAB_PTR=char -DIN_ARB_PROBE_DESIGN -c -o probe_match_parser.o probe_match_parser.cxx  -I. -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/INCLUDE -I/include -I/System/Library/Frameworks/OpenGL.framework/Headers -I/usr/include/krb5 -I/System/Library/Frameworks/GLUT.framework/Headers
427probe_design.cxx: In function ‘void pd_query_pt_server(AW_window*)’:
428probe_design.cxx:1769: warning: ignoring return value of ‘const char* GB_xcmd(const char*, GB_BOOL, GB_BOOL)’, declared with attribute warn_unused_result
429ld   -arch x86_64  -r -o PROBE_DESIGN.a probe_design.o SaiProbeVisualization.o probe_match_parser.o
430make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779/PROBE_DESIGN'
431make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
432make[1]: *** [arb] Error 2
433make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
434make: *** [all] Error 2
435make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_arb/arb/work/arbsrc_6779'
436-ne
437sh-3.2#