| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | # $Id$ |
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| 3 | |
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| 4 | PortSystem 1.0 |
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| 5 | name cell-id |
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| 6 | version 1.4.6 |
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| 7 | categories biology science |
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| 8 | platforms darwin |
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| 9 | maintainers fbmc.fcen.uba.ar:abush |
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| 10 | description Microscopy based cytometry segmentation software |
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| 11 | long_description Cell-ID is a command line software that segments bright field \ |
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| 12 | microscopy images of yeast and mammalian cells, tracks cells \ |
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| 13 | over time and quantifies morphological and fluorescence \ |
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| 14 | features for each cell. |
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| 15 | homepage http://sourceforge.net/projects/cell-id |
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| 16 | master_sites sourceforge:cell-id |
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| 17 | distfiles cell_id_1.4.6.zip |
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| 18 | |
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| 19 | checksums md5 add16051f92ff4b95ba73619cfd33036 \ |
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| 20 | sha1 d3e67b45af06d136b137ac2fca1a529e0f5f803b \ |
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| 21 | rmd160 1406f30acdd62d87f1135eaa5b8e791663237c70 |
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| 22 | |
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| 23 | depends_lib port:glib2 \ |
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| 24 | port:tiff |
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| 25 | |
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| 26 | use_zip yes |
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| 27 | use_configure no |
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| 28 | distname cell_id_${version} |
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| 29 | build.target cell |
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| 30 | build.env CC=clang |
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| 31 | use_parallel_build no |
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| 32 | |
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| 33 | pre-build { |
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| 34 | reinplace "s|-static||g" ${worksrcpath}/Makefile |
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| 35 | reinplace "s|-I/local|-I${prefix}|g" ${worksrcpath}/Makefile |
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| 36 | reinplace "s|-L/local/lib|-I${prefix}/lib/glib-2.0/include -L${prefix}/lib|g" ${worksrcpath}/Makefile |
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| 37 | reinplace "s|rm cell|rm -f cell|g" ${worksrcpath}/Makefile |
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| 38 | reinplace "s|gcc|\$(CC)|g" ${worksrcpath}/Makefile |
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| 39 | exec rm -f ${worksrcpath}/cell ${worksrcpath}/cell.o ${worksrcpath}/tif.o ${worksrcpath}/segment.o ${worksrcpath}/contiguous.o ${worksrcpath}/nums.o ${worksrcpath}/date_and_time.o ${worksrcpath}/fit.o ${worksrcpath}/fft.o ${worksrcpath}/fft_stats.o ${worksrcpath}/split_and_overlap.o ${worksrcpath}/fl_dist.o ${worksrcpath}/align_image.o ${worksrcpath}/flatten.o |
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| 40 | } |
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| 41 | |
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| 42 | destroot { |
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| 43 | file copy ${worksrcpath}/cell ${destroot}/${prefix}/bin/cell |
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| 44 | } |
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