diff -ur ../exonerate-2.2.0.orig/src/program/Makefile.am ./src/program/Makefile.am
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67 | 67 | BUILT_SOURCES = c4_model_archive.a |
68 | 68 | BOOTSTRAPPER = $(top_srcdir)/src/model/bootstrapper |
69 | 69 | c4_model_archive.h: $(BOOTSTRAPPER) |
70 | | $(BOOTSTRAPPER) --compiled no |
| 70 | CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no |
71 | 71 | c4_model_archive.a: $(BOOTSTRAPPER) |
72 | | $(BOOTSTRAPPER) --compiled no |
| 72 | CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no |
73 | 73 | |
74 | 74 | # Special viterbi.o and scheduler.o for compiled model linking |
75 | 75 | viterbi.o: $(top_srcdir)/src/c4/viterbi.c |