Ticket #33633: main.log

File main.log, 99.2 KB (added by ryandesign (Ryan Carsten Schmidt), 13 years ago)
Line 
1version:1
2:msg:main --->  Computing dependencies for seqan:msg:main
3:debug:main Searching for dependency: unzip
4:debug:main Didn't find receipt, going to depspec regex for: unzip
5:debug:main Found Dependency: path: /usr/bin filename: unzip regex: ^unzip$
6:debug:main Found Dependency: path: /usr/bin filename: unzip regex: ^unzip$
7:debug:main Searching for dependency: cmake
8:debug:main Found Dependency: receipt exists for cmake
9:debug:main Searching for dependency: python27
10:debug:main Found Dependency: receipt exists for python27
11:debug:main Executing org.macports.main (seqan)
12:debug:main changing euid/egid - current euid: 0 - current egid: 0
13:debug:main egid changed to: 528
14:debug:main euid changed to: 528
15:debug:main Skipping completed org.macports.archivefetch (seqan)
16:debug:main Privilege de-escalation not attempted as not running as root.
17:debug:fetch fetch phase started at Wed Mar 14 21:23:07 CDT 2012
18:notice:fetch --->  Fetching seqan
19:debug:fetch euid/egid changed to: 0/0
20:debug:fetch chowned /i386-10.6-mp/var/macports/distfiles/seqan/1.3.1_1 to macports
21:debug:fetch euid/egid changed to: 528/528
22:debug:fetch Executing org.macports.fetch (seqan)
23:info:fetch --->  seqan-1.3.1.zip doesn't seem to exist in /i386-10.6-mp/var/macports/distfiles/seqan/1.3.1_1
24:debug:fetch Pinging ftp.seqan.de...
25:debug:fetch Pinging distfiles.macports.org...
26:debug:fetch Pinging aarnet.au.distfiles.macports.org...
27:debug:fetch Pinging her.gr.distfiles.macports.org...
28:debug:fetch Pinging lil.fr.distfiles.macports.org...
29:debug:fetch Pinging sea.us.distfiles.macports.org...
30:debug:fetch Pinging ykf.ca.distfiles.macports.org...
31:debug:fetch ftp.seqan.de ping time is 10000
32:debug:fetch distfiles.macports.org ping time is 134.463
33:debug:fetch aarnet.au.distfiles.macports.org ping time is 220.654
34:debug:fetch her.gr.distfiles.macports.org ping time is 204.561
35:debug:fetch lil.fr.distfiles.macports.org ping time is 126.670
36:debug:fetch sea.us.distfiles.macports.org ping time is 10000
37:debug:fetch ykf.ca.distfiles.macports.org ping time is 70.758
38:notice:fetch --->  Attempting to fetch seqan-1.3.1.zip from http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/seqan/1.3.1_1
39:debug:fetch Fetching failed:: The requested URL returned error: 404
40:notice:fetch --->  Attempting to fetch seqan-1.3.1.zip from http://lil.fr.distfiles.macports.org/seqan/1.3.1_1
41:debug:fetch Privilege de-escalation not attempted as not running as root.
42:debug:checksum checksum phase started at Wed Mar 14 21:23:32 CDT 2012
43:notice:checksum --->  Verifying checksum(s) for seqan
44:debug:checksum Executing org.macports.checksum (seqan)
45:info:checksum --->  Checksumming seqan-1.3.1.zip
46:debug:checksum Correct (rmd160) checksum for seqan-1.3.1.zip
47:debug:checksum Correct (sha256) checksum for seqan-1.3.1.zip
48:debug:checksum Privilege de-escalation not attempted as not running as root.
49:debug:extract extract phase started at Wed Mar 14 21:23:32 CDT 2012
50:notice:extract --->  Extracting seqan
51:debug:extract setting option extract.cmd to /usr/bin/unzip
52:debug:extract setting option extract.pre_args to -q
53:debug:extract setting option extract.post_args to {-d /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work}
54:debug:extract Executing org.macports.extract (seqan)
55:info:extract --->  Extracting seqan-1.3.1.zip
56:debug:extract setting option extract.args to '/i386-10.6-mp/var/macports/distfiles/seqan/1.3.1_1/seqan-1.3.1.zip'
57:debug:extract Environment: CPATH='/i386-10.6-mp/include' CC_PRINT_OPTIONS_FILE='/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/i386-10.6-mp/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
58:debug:extract Assembled command: 'cd "/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work" && /usr/bin/unzip -q '/i386-10.6-mp/var/macports/distfiles/seqan/1.3.1_1/seqan-1.3.1.zip' -d /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work'
59:debug:extract Executing command line:  cd "/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work" && /usr/bin/unzip -q '/i386-10.6-mp/var/macports/distfiles/seqan/1.3.1_1/seqan-1.3.1.zip' -d /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work
60:debug:extract euid/egid changed to: 0/0
61:debug:extract chowned /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work to macports
62:debug:extract euid/egid changed to: 528/528
63:debug:extract Privilege de-escalation not attempted as not running as root.
64:debug:patch patch phase started at Wed Mar 14 21:23:37 CDT 2012
65:debug:patch Executing org.macports.patch (seqan)
66:debug:patch Privilege de-escalation not attempted as not running as root.
67:debug:configure configure phase started at Wed Mar 14 21:23:37 CDT 2012
68:notice:configure --->  Configuring seqan
69:debug:configure Using compiler 'Mac OS X gcc 4.2'
70:debug:configure Executing org.macports.configure (seqan)
71:debug:configure Environment: CPATH='/i386-10.6-mp/include' CFLAGS='-pipe -O2 -arch i386' CPPFLAGS='-I/i386-10.6-mp/include' CXXFLAGS='-pipe -O2 -arch i386' LIBRARY_PATH='/i386-10.6-mp/lib' MACOSX_DEPLOYMENT_TARGET='10.6' CXX='/usr/bin/g++-4.2' CC_PRINT_OPTIONS_FILE='/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m32' LDFLAGS='-L/i386-10.6-mp/lib -arch i386' OBJC='/usr/bin/gcc-4.2' FCFLAGS='-pipe -O2 -m32' INSTALL='/usr/bin/install -c' OBJCFLAGS='-pipe -O2 -arch i386' FFLAGS='-pipe -O2 -m32' CC_PRINT_OPTIONS='YES' CC='/usr/bin/gcc-4.2'
72:debug:configure Assembled command: 'cd "/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake" && cmake -DCMAKE_INSTALL_PREFIX=/i386-10.6-mp -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DPYTHON_EXECUTABLE=/i386-10.6-mp/bin/python2.7'
73:debug:configure Executing command line:  cd "/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake" && cmake -DCMAKE_INSTALL_PREFIX=/i386-10.6-mp -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DPYTHON_EXECUTABLE=/i386-10.6-mp/bin/python2.7
74:info:configure -- The C compiler identification is GNU
75:info:configure -- The CXX compiler identification is GNU
76:info:configure -- Checking whether C compiler has -isysroot
77:info:configure -- Checking whether C compiler has -isysroot - yes
78:info:configure -- Checking whether C compiler supports OSX deployment target flag
79:info:configure -- Checking whether C compiler supports OSX deployment target flag - yes
80:info:configure -- Check for working C compiler: /usr/bin/gcc-4.2
81:info:configure -- Check for working C compiler: /usr/bin/gcc-4.2 -- works
82:info:configure -- Detecting C compiler ABI info
83:info:configure -- Detecting C compiler ABI info - done
84:info:configure -- Checking whether CXX compiler has -isysroot
85:info:configure -- Checking whether CXX compiler has -isysroot - yes
86:info:configure -- Checking whether CXX compiler supports OSX deployment target flag
87:info:configure -- Checking whether CXX compiler supports OSX deployment target flag - yes
88:info:configure -- Check for working CXX compiler: /usr/bin/g++-4.2
89:info:configure -- Check for working CXX compiler: /usr/bin/g++-4.2 -- works
90:info:configure -- Detecting CXX compiler ABI info
91:info:configure -- Detecting CXX compiler ABI info - done
92:info:configure -- Found PythonInterp: /i386-10.6-mp/bin/python2.7 (found version "2.7.2")
93:info:configure Determining GCC version.
94:info:configure   GCC version is 421
95:info:configure -- Try OpenMP C flag = [-fopenmp]
96:info:configure -- Performing Test OpenMP_FLAG_DETECTED
97:info:configure -- Performing Test OpenMP_FLAG_DETECTED - Success
98:info:configure -- Try OpenMP CXX flag = [-fopenmp]
99:info:configure -- Performing Test OpenMP_FLAG_DETECTED
100:info:configure -- Performing Test OpenMP_FLAG_DETECTED - Success
101:info:configure -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY
102:info:configure -- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY - Success
103:info:configure -- Performing Test TR1_SHARED_PTR_USE_MEMORY
104:info:configure -- Performing Test TR1_SHARED_PTR_USE_MEMORY - Failed
105:info:configure -- Configuring done
106:info:configure -- Generating done
107:info:configure -- Build files have been written to: /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake
108:debug:configure Privilege de-escalation not attempted as not running as root.
109:debug:build build phase started at Wed Mar 14 21:23:47 CDT 2012
110:notice:build --->  Building seqan
111:debug:build Executing org.macports.build (seqan)
112:debug:build Environment: CPATH='/i386-10.6-mp/include' CC_PRINT_OPTIONS_FILE='/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/i386-10.6-mp/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.6'
113:debug:build Assembled command: 'cd "/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake" && /usr/bin/make -j2 -w all'
114:debug:build Executing command line:  cd "/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake" && /usr/bin/make -j2 -w all
115:info:build make: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
116:info:build /i386-10.6-mp/bin/cmake -H/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake -B/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake --check-build-system CMakeFiles/Makefile.cmake 0
117:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_start /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles/progress.marks
118:info:build /usr/bin/make -f CMakeFiles/Makefile2 all
119:info:build make[1]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
120:info:build /usr/bin/make -f libs/samtools/CMakeFiles/bam.dir/build.make libs/samtools/CMakeFiles/bam.dir/depend
121:info:build /usr/bin/make -f CMakeFiles/Seqan.dir/build.make CMakeFiles/Seqan.dir/depend
122:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
123:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake && /i386-10.6-mp/bin/cmake -E cmake_depends "Unix Makefiles" /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/libs/samtools /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/libs/samtools/CMakeFiles/bam.dir/DependInfo.cmake --color=
124:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
125:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake && /i386-10.6-mp/bin/cmake -E cmake_depends "Unix Makefiles" /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles/Seqan.dir/DependInfo.cmake --color=
126:info:build Scanning dependencies of target Seqan
127:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
128:info:build /usr/bin/make -f CMakeFiles/Seqan.dir/build.make CMakeFiles/Seqan.dir/build
129:info:build Scanning dependencies of target bam
130:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
131:info:build /usr/bin/make -f libs/samtools/CMakeFiles/bam.dir/build.make libs/samtools/CMakeFiles/bam.dir/build
132:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
133:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles 5
134:info:build [  1%] Building C object libs/samtools/CMakeFiles/bam.dir/bgzf.c.o
135:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/libs/samtools && /usr/bin/gcc-4.2  -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -pipe -O2 -arch i386  -O3 -DNDEBUG -mmacosx-version-min=10.6 -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1    -o CMakeFiles/bam.dir/bgzf.c.o   -c /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools/bgzf.c
136:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
137:info:build make[2]: Nothing to be done for `CMakeFiles/Seqan.dir/build'.
138:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
139:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles
140:info:build [  1%] Built target Seqan
141:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles 6
142:info:build [  2%] Building C object libs/samtools/CMakeFiles/bam.dir/kstring.c.o
143:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/libs/samtools && /usr/bin/gcc-4.2  -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -pipe -O2 -arch i386  -O3 -DNDEBUG -mmacosx-version-min=10.6 -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1    -o CMakeFiles/bam.dir/kstring.c.o   -c /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools/kstring.c
144:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles 7
145:info:build [  3%] Building C object libs/samtools/CMakeFiles/bam.dir/bam_aux.c.o
146:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/libs/samtools && /usr/bin/gcc-4.2  -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -pipe -O2 -arch i386  -O3 -DNDEBUG -mmacosx-version-min=10.6 -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1    -o CMakeFiles/bam.dir/bam_aux.c.o   -c /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools/bam_aux.c
147:info:build /usr/bin/make -f apps/CMakeFiles/dfi.dir/build.make apps/CMakeFiles/dfi.dir/depend
148:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
149:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake && /i386-10.6-mp/bin/cmake -E cmake_depends "Unix Makefiles" /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps/CMakeFiles/dfi.dir/DependInfo.cmake --color=
150:info:build Scanning dependencies of target dfi
151:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
152:info:build /usr/bin/make -f apps/CMakeFiles/dfi.dir/build.make apps/CMakeFiles/dfi.dir/build
153:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
154:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles 19
155:info:build [  4%] Building CXX object apps/CMakeFiles/dfi.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/dfi/dfi.cpp.o
156:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps && /usr/bin/g++-4.2    -pipe -O2 -arch i386  -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -O3 -DNDEBUG -DSEQAN_ENABLE_DEBUG=0 -mmacosx-version-min=10.6 -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1    -o CMakeFiles/dfi.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/dfi/dfi.cpp.o -c /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/dfi/dfi.cpp
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202:info:build Linking C static library libbam.a
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206:info:build /usr/bin/ranlib libbam.a
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210:info:build /usr/bin/make -f apps/CMakeFiles/insegt.dir/build.make apps/CMakeFiles/insegt.dir/depend
211:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
212:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake && /i386-10.6-mp/bin/cmake -E cmake_depends "Unix Makefiles" /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps/CMakeFiles/insegt.dir/DependInfo.cmake --color=
213:info:build Scanning dependencies of target insegt
214:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
215:info:build /usr/bin/make -f apps/CMakeFiles/insegt.dir/build.make apps/CMakeFiles/insegt.dir/build
216:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
217:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles 44
218:info:build [ 15%] Building CXX object apps/CMakeFiles/insegt.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/insegt/insegt.cpp.o
219:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps && /usr/bin/g++-4.2    -pipe -O2 -arch i386  -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -O3 -DNDEBUG -DSEQAN_ENABLE_DEBUG=0 -mmacosx-version-min=10.6 -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1    -o CMakeFiles/insegt.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/insegt/insegt.cpp.o -c /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/insegt/insegt.cpp
220:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/basic/basic_aggregates.h: In function ‘void seqan::normalizeAnnoCounts(TAnnoNormStore&, TMapO&, TAnnoCountStore&, seqan::FragmentStore<TSpec, TConfig>&) [with TAnnoNormStore = seqan::String<double, seqan::Alloc<void> >, TMapO = seqan::Map<seqan::Pair<unsigned int, bool, void>, seqan::Skiplist<const seqan::Tag<seqan::Default_> > >, TAnnoCountStore = seqan::String<unsigned int, seqan::Alloc<void> >, TSpec = void, TConfig = seqan::FragmentStoreConfig<void>]’:
221:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/basic/basic_aggregates.h:83: warning: ‘val_temp.seqan::Pair<unsigned int, bool, void>::i2’ is used uninitialized in this function
222:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/map/map_skiplist.h:657: note: ‘val_temp.seqan::Pair<unsigned int, bool, void>::i2’ was declared here
223:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/basic/basic_aggregates.h:83: warning: ‘val_temp.seqan::Pair<unsigned int, bool, void>::i2’ is used uninitialized in this function
224:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/map/map_skiplist.h:657: note: ‘val_temp.seqan::Pair<unsigned int, bool, void>::i2’ was declared here
225:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinFreq, TPred = PredMaxFreq, TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>, TParamPredHull = seqan::String<unsigned int, seqan::Alloc<void> >, TParamPred = seqan::String<unsigned int, seqan::Alloc<void> >, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
226:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
227:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
228:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
229:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
230:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinFreq, TPred = PredMaxFreq, TAlphabet = unsigned char, TParamPredHull = seqan::String<unsigned int, seqan::Alloc<void> >, TParamPred = seqan::String<unsigned int, seqan::Alloc<void> >, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
231:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
232:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
233:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
234:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
235:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinAllSupp, TPred = PredEntropy, TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
236:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
237:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
238:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
239:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
240:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinSupp, TPred = PredEmerging, TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
241:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
242:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
243:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
244:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
245:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/insegt/overlap_module.h: In function ‘void seqan::buildAnnoCountStore(TAnnoCountStore&, seqan::FragmentStore<TSpec, TConfig>&, TReadAnnoStore&) [with TAnnoCountStore = seqan::String<unsigned int, seqan::Alloc<void> >, TSpec = void, TConfig = seqan::FragmentStoreConfig<void>, TReadAnnoStore = seqan::String<seqan::ReadAnnoStoreElement<unsigned int>, seqan::Alloc<void> >]’:
246:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/insegt/overlap_module.h:445: warning: ‘secReadId’ may be used uninitialized in this function
247:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinFreq, TPred = PredMaxFreq, TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>, TParamPredHull = seqan::String<unsigned int, seqan::Alloc<void> >, TParamPred = seqan::String<unsigned int, seqan::Alloc<void> >, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
248:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
249:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
250:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
251:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
252:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinAllSupp, TPred = PredEntropy, TAlphabet = unsigned char, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
253:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
254:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
255:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
256:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
257:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinSupp, TPred = PredEmerging, TAlphabet = seqan::SimpleType<unsigned char, seqan::Dna_>, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
258:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
259:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
260:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
261:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
262:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinAllSupp, TPred = PredEntropy, TAlphabet = seqan::SimpleType<unsigned char, seqan::AminoAcid_>, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
263:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
264:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
265:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
266:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
267:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h: In function ‘int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool) [with TPredHull = PredMinSupp, TPred = PredEmerging, TAlphabet = unsigned char, TParamPredHull = double, TParamPred = double, TFileNames = seqan::String<seqan::String<char, seqan::Alloc<void> >, seqan::Alloc<void> >]’:
268:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ may be used uninitialized in this function
269:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i1’ was declared here
270:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: warning: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ may be used uninitialized in this function
271:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/index/index_wotd.h:866: note: ‘desc.seqan::VertexWotdModified_<long unsigned int>::range.seqan::Pair<long unsigned int, long unsigned int, void>::i2’ was declared here
272:info:build Linking CXX executable dfi
273:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps && /i386-10.6-mp/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1
274:info:build /usr/bin/g++-4.2   -pipe -O2 -arch i386  -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -O3 -DNDEBUG -DSEQAN_ENABLE_DEBUG=0 -mmacosx-version-min=10.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names  -L/i386-10.6-mp/lib -arch i386 CMakeFiles/dfi.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/dfi/dfi.cpp.o  -o dfi  -L/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib -lz
275:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
276:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles  19
277:info:build [ 15%] Built target dfi
278:info:build /usr/bin/make -f apps/CMakeFiles/mason.dir/build.make apps/CMakeFiles/mason.dir/depend
279:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
280:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake && /i386-10.6-mp/bin/cmake -E cmake_depends "Unix Makefiles" /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps/CMakeFiles/mason.dir/DependInfo.cmake --color=
281:info:build Scanning dependencies of target mason
282:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
283:info:build /usr/bin/make -f apps/CMakeFiles/mason.dir/build.make apps/CMakeFiles/mason.dir/build
284:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
285:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles 47
286:info:build [ 16%] Building CXX object apps/CMakeFiles/mason.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/mason/mason.cpp.o
287:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps && /usr/bin/g++-4.2    -pipe -O2 -arch i386  -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -O3 -DNDEBUG -DSEQAN_ENABLE_DEBUG=0 -mmacosx-version-min=10.6 -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1    -o CMakeFiles/mason.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/mason/mason.cpp.o -c /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/mason/mason.cpp
288:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/basic/basic_aggregates.h: In function ‘void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, seqan::FragmentStore<TSpec, TConfig>&, TMap&) [with TFile = std::fstream, TAnnoCountStore = seqan::String<unsigned int, seqan::Alloc<void> >, TAnnoNormStore = seqan::String<double, seqan::Alloc<void> >, TSpec = void, TConfig = seqan::FragmentStoreConfig<void>, TMap = seqan::Map<seqan::Pair<unsigned int, bool, void>, seqan::Skiplist<const seqan::Tag<seqan::Default_> > >]’:
289:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/basic/basic_aggregates.h:83: warning: ‘val_temp.seqan::Pair<unsigned int, bool, void>::i2’ is used uninitialized in this function
290:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/seqan/map/map_skiplist.h:657: note: ‘val_temp.seqan::Pair<unsigned int, bool, void>::i2’ was declared here
291:info:build Linking CXX executable insegt
292:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps && /i386-10.6-mp/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1
293:info:build /usr/bin/g++-4.2   -pipe -O2 -arch i386  -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -O3 -DNDEBUG -DSEQAN_ENABLE_DEBUG=0 -mmacosx-version-min=10.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names  -L/i386-10.6-mp/lib -arch i386 CMakeFiles/insegt.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/insegt/insegt.cpp.o  -o insegt  -L/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib -lz
294:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
295:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles  44
296:info:build [ 16%] Built target insegt
297:info:build /usr/bin/make -f apps/CMakeFiles/micro_razers.dir/build.make apps/CMakeFiles/micro_razers.dir/depend
298:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
299:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake && /i386-10.6-mp/bin/cmake -E cmake_depends "Unix Makefiles" /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps/CMakeFiles/micro_razers.dir/DependInfo.cmake --color=
300:info:build Scanning dependencies of target micro_razers
301:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
302:info:build /usr/bin/make -f apps/CMakeFiles/micro_razers.dir/build.make apps/CMakeFiles/micro_razers.dir/build
303:info:build make[2]: Entering directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
304:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles
305:info:build [ 16%] Building CXX object apps/CMakeFiles/micro_razers.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/micro_razers/micro_razers.cpp.o
306:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps && /usr/bin/g++-4.2    -pipe -O2 -arch i386  -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -O3 -DNDEBUG -DSEQAN_ENABLE_DEBUG=0 -mmacosx-version-min=10.6 -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib/samtools -I/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1    -o CMakeFiles/micro_razers.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/micro_razers/micro_razers.cpp.o -c /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/micro_razers/micro_razers.cpp
307:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/mason/simulate_illumina.h: In function ‘void applySimulationInstructions(TString&, TRNG&, const ReadSimulationInstruction<seqan::Tag<IlluminaReads_> >&, const Options<seqan::Tag<IlluminaReads_> >&) [with TRNG = seqan::Rng<seqan::MersenneTwister>, TString = seqan::String<seqan::SimpleType<unsigned char, seqan::Dna5Q_>, seqan::Alloc<void> >]’:
308:info:build /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/mason/simulate_illumina.h:461: internal compiler error: Segmentation fault
309:info:build Please submit a full bug report,
310:info:build with preprocessed source if appropriate.
311:info:build See <URL:http://developer.apple.com/bugreporter> for instructions.
312:info:build {standard input}:1178:non-relocatable subtraction expression, "LC7" minus "L00000000011$pb"
313:info:build {standard input}:1178:symbol: "LC7" can't be undefined in a subtraction expression
314:info:build {standard input}:1168:non-relocatable subtraction expression, "LC6" minus "L00000000011$pb"
315:info:build {standard input}:1168:symbol: "LC6" can't be undefined in a subtraction expression
316:info:build {standard input}:648:non-relocatable subtraction expression, "__ZStL8__ioinit" minus "L00000000007$pb"
317:info:build {standard input}:648:symbol: "__ZStL8__ioinit" can't be undefined in a subtraction expression
318:info:build {standard input}:122:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000004$pb"
319:info:build {standard input}:122:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
320:info:build {standard input}:33914:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000045$pb"
321:info:build {standard input}:33914:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
322:info:build {standard input}:33703:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" minus "L00000000044$pb"
323:info:build {standard input}:33703:symbol: "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
324:info:build {standard input}:33701:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000044$pb"
325:info:build {standard input}:33701:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
326:info:build {standard input}:32301:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" minus "L00000000043$pb"
327:info:build {standard input}:32301:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
328:info:build {standard input}:31640:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" minus "L00000000042$pb"
329:info:build {standard input}:31640:symbol: "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
330:info:build {standard input}:30393:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" minus "L00000000041$pb"
331:info:build {standard input}:30393:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
332:info:build {standard input}:29480:non-relocatable subtraction expression, "LC18" minus "L00000000040$pb"
333:info:build {standard input}:29480:symbol: "LC18" can't be undefined in a subtraction expression
334:info:build {standard input}:29475:non-relocatable subtraction expression, "LC11" minus "L00000000040$pb"
335:info:build {standard input}:29475:symbol: "LC11" can't be undefined in a subtraction expression
336:info:build {standard input}:29366:non-relocatable subtraction expression, "LC12" minus "L00000000040$pb"
337:info:build {standard input}:29366:symbol: "LC12" can't be undefined in a subtraction expression
338:info:build {standard input}:29357:non-relocatable subtraction expression, "LC21" minus "L00000000040$pb"
339:info:build {standard input}:29357:symbol: "LC21" can't be undefined in a subtraction expression
340:info:build {standard input}:29351:non-relocatable subtraction expression, "LC20" minus "L00000000040$pb"
341:info:build {standard input}:29351:symbol: "LC20" can't be undefined in a subtraction expression
342:info:build {standard input}:29349:non-relocatable subtraction expression, "LC19" minus "L00000000040$pb"
343:info:build {standard input}:29349:symbol: "LC19" can't be undefined in a subtraction expression
344:info:build {standard input}:29343:non-relocatable subtraction expression, "LC11" minus "L00000000040$pb"
345:info:build {standard input}:29343:symbol: "LC11" can't be undefined in a subtraction expression
346:info:build {standard input}:29333:non-relocatable subtraction expression, "LC6" minus "L00000000040$pb"
347:info:build {standard input}:29333:symbol: "LC6" can't be undefined in a subtraction expression
348:info:build {standard input}:29329:non-relocatable subtraction expression, "LC18" minus "L00000000040$pb"
349:info:build {standard input}:29329:symbol: "LC18" can't be undefined in a subtraction expression
350:info:build {standard input}:29326:non-relocatable subtraction expression, "LC11" minus "L00000000040$pb"
351:info:build {standard input}:29326:symbol: "LC11" can't be undefined in a subtraction expression
352:info:build {standard input}:29130:non-relocatable subtraction expression, "LC23" minus "L00000000040$pb"
353:info:build {standard input}:29130:symbol: "LC23" can't be undefined in a subtraction expression
354:info:build {standard input}:29127:non-relocatable subtraction expression, "LC11" minus "L00000000040$pb"
355:info:build {standard input}:29127:symbol: "LC11" can't be undefined in a subtraction expression
356:info:build {standard input}:29063:non-relocatable subtraction expression, "LC12" minus "L00000000039$pb"
357:info:build {standard input}:29063:symbol: "LC12" can't be undefined in a subtraction expression
358:info:build {standard input}:29054:non-relocatable subtraction expression, "LC21" minus "L00000000039$pb"
359:info:build {standard input}:29054:symbol: "LC21" can't be undefined in a subtraction expression
360:info:build {standard input}:29048:non-relocatable subtraction expression, "LC20" minus "L00000000039$pb"
361:info:build {standard input}:29048:symbol: "LC20" can't be undefined in a subtraction expression
362:info:build {standard input}:29046:non-relocatable subtraction expression, "LC19" minus "L00000000039$pb"
363:info:build {standard input}:29046:symbol: "LC19" can't be undefined in a subtraction expression
364:info:build {standard input}:29040:non-relocatable subtraction expression, "LC11" minus "L00000000039$pb"
365:info:build {standard input}:29040:symbol: "LC11" can't be undefined in a subtraction expression
366:info:build {standard input}:29029:non-relocatable subtraction expression, "LC6" minus "L00000000039$pb"
367:info:build {standard input}:29029:symbol: "LC6" can't be undefined in a subtraction expression
368:info:build {standard input}:29025:non-relocatable subtraction expression, "LC18" minus "L00000000039$pb"
369:info:build {standard input}:29025:symbol: "LC18" can't be undefined in a subtraction expression
370:info:build {standard input}:29022:non-relocatable subtraction expression, "LC11" minus "L00000000039$pb"
371:info:build {standard input}:29022:symbol: "LC11" can't be undefined in a subtraction expression
372:info:build {standard input}:26730:non-relocatable subtraction expression, "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" minus "L00000000037$pb"
373:info:build {standard input}:26730:symbol: "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" can't be undefined in a subtraction expression
374:info:build {standard input}:26611:non-relocatable subtraction expression, "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" minus "L00000000037$pb"
375:info:build {standard input}:26611:symbol: "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" can't be undefined in a subtraction expression
376:info:build {standard input}:26517:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000037$pb"
377:info:build {standard input}:26517:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
378:info:build {standard input}:26503:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000037$pb"
379:info:build {standard input}:26503:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
380:info:build {standard input}:26487:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000037$pb"
381:info:build {standard input}:26487:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
382:info:build {standard input}:26472:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000037$pb"
383:info:build {standard input}:26472:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
384:info:build {standard input}:25124:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" minus "L00000000036$pb"
385:info:build {standard input}:25124:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
386:info:build {standard input}:25122:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableAsciiToDna5_IvE5VALUEE$non_lazy_ptr" minus "L00000000036$pb"
387:info:build {standard input}:25122:symbol: "L__ZN5seqan26TranslateTableAsciiToDna5_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
388:info:build {standard input}:23274:non-relocatable subtraction expression, "L__ZSt7nothrow$non_lazy_ptr" minus "L00000000035$pb"
389:info:build {standard input}:23274:symbol: "L__ZSt7nothrow$non_lazy_ptr" can't be undefined in a subtraction expression
390:info:build {standard input}:23220:non-relocatable subtraction expression, "L__ZSt7nothrow$non_lazy_ptr" minus "L00000000035$pb"
391:info:build {standard input}:23220:symbol: "L__ZSt7nothrow$non_lazy_ptr" can't be undefined in a subtraction expression
392:info:build {standard input}:20914:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000033$pb"
393:info:build {standard input}:20914:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
394:info:build {standard input}:20882:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000033$pb"
395:info:build {standard input}:20882:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
396:info:build {standard input}:20850:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000033$pb"
397:info:build {standard input}:20850:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
398:info:build {standard input}:16533:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" minus "L00000000031$pb"
399:info:build {standard input}:16533:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
400:info:build {standard input}:16293:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" minus "L00000000031$pb"
401:info:build {standard input}:16293:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
402:info:build {standard input}:15243:non-relocatable subtraction expression, "LC6" minus "L00000000030$pb"
403:info:build {standard input}:15243:symbol: "LC6" can't be undefined in a subtraction expression
404:info:build {standard input}:15233:non-relocatable subtraction expression, "LC18" minus "L00000000030$pb"
405:info:build {standard input}:15233:symbol: "LC18" can't be undefined in a subtraction expression
406:info:build {standard input}:15230:non-relocatable subtraction expression, "LC11" minus "L00000000030$pb"
407:info:build {standard input}:15230:symbol: "LC11" can't be undefined in a subtraction expression
408:info:build {standard input}:15088:non-relocatable subtraction expression, "LC23" minus "L00000000030$pb"
409:info:build {standard input}:15088:symbol: "LC23" can't be undefined in a subtraction expression
410:info:build {standard input}:15085:non-relocatable subtraction expression, "LC11" minus "L00000000030$pb"
411:info:build {standard input}:15085:symbol: "LC11" can't be undefined in a subtraction expression
412:info:build {standard input}:15084:non-relocatable subtraction expression, "LC22" minus "L00000000030$pb"
413:info:build {standard input}:15084:symbol: "LC22" can't be undefined in a subtraction expression
414:info:build {standard input}:15081:non-relocatable subtraction expression, "LC11" minus "L00000000030$pb"
415:info:build {standard input}:15081:symbol: "LC11" can't be undefined in a subtraction expression
416:info:build {standard input}:14919:non-relocatable subtraction expression, "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000029$pb"
417:info:build {standard input}:14919:symbol: "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
418:info:build {standard input}:14862:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" minus "L00000000029$pb"
419:info:build {standard input}:14862:symbol: "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
420:info:build {standard input}:14860:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000029$pb"
421:info:build {standard input}:14860:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
422:info:build {standard input}:14694:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" minus "L00000000028$pb"
423:info:build {standard input}:14694:symbol: "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
424:info:build {standard input}:14692:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000028$pb"
425:info:build {standard input}:14692:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
426:info:build {standard input}:14483:non-relocatable subtraction expression, "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000027$pb"
427:info:build {standard input}:14483:symbol: "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
428:info:build {standard input}:14429:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" minus "L00000000027$pb"
429:info:build {standard input}:14429:symbol: "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
430:info:build {standard input}:14427:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000027$pb"
431:info:build {standard input}:14427:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
432:info:build {standard input}:14253:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" minus "L00000000026$pb"
433:info:build {standard input}:14253:symbol: "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
434:info:build {standard input}:14251:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000026$pb"
435:info:build {standard input}:14251:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
436:info:build {standard input}:13637:non-relocatable subtraction expression, "L__ZSt7nothrow$non_lazy_ptr" minus "L00000000024$pb"
437:info:build {standard input}:13637:symbol: "L__ZSt7nothrow$non_lazy_ptr" can't be undefined in a subtraction expression
438:info:build {standard input}:13430:non-relocatable subtraction expression, "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" minus "L00000000023$pb"
439:info:build {standard input}:13430:symbol: "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" can't be undefined in a subtraction expression
440:info:build {standard input}:12296:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" minus "L00000000022$pb"
441:info:build {standard input}:12296:symbol: "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
442:info:build {standard input}:12293:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" minus "L00000000022$pb"
443:info:build {standard input}:12293:symbol: "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
444:info:build {standard input}:12246:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" minus "L00000000022$pb"
445:info:build {standard input}:12246:symbol: "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
446:info:build {standard input}:12243:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" minus "L00000000022$pb"
447:info:build {standard input}:12243:symbol: "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
448:info:build {standard input}:9513:non-relocatable subtraction expression, "LC11" minus "L00000000021$pb"
449:info:build {standard input}:9513:symbol: "LC11" can't be undefined in a subtraction expression
450:info:build {standard input}:9505:non-relocatable subtraction expression, "LC11" minus "L00000000021$pb"
451:info:build {standard input}:9505:symbol: "LC11" can't be undefined in a subtraction expression
452:info:build {standard input}:9398:non-relocatable subtraction expression, "LC6" minus "L00000000021$pb"
453:info:build {standard input}:9398:symbol: "LC6" can't be undefined in a subtraction expression
454:info:build {standard input}:9382:non-relocatable subtraction expression, "LC11" minus "L00000000021$pb"
455:info:build {standard input}:9382:symbol: "LC11" can't be undefined in a subtraction expression
456:info:build {standard input}:9374:non-relocatable subtraction expression, "LC18" minus "L00000000021$pb"
457:info:build {standard input}:9374:symbol: "LC18" can't be undefined in a subtraction expression
458:info:build {standard input}:9371:non-relocatable subtraction expression, "LC11" minus "L00000000021$pb"
459:info:build {standard input}:9371:symbol: "LC11" can't be undefined in a subtraction expression
460:info:build {standard input}:9273:non-relocatable subtraction expression, "LC11" minus "L00000000021$pb"
461:info:build {standard input}:9273:symbol: "LC11" can't be undefined in a subtraction expression
462:info:build {standard input}:9206:non-relocatable subtraction expression, "LC23" minus "L00000000021$pb"
463:info:build {standard input}:9206:symbol: "LC23" can't be undefined in a subtraction expression
464:info:build {standard input}:9203:non-relocatable subtraction expression, "LC11" minus "L00000000021$pb"
465:info:build {standard input}:9203:symbol: "LC11" can't be undefined in a subtraction expression
466:info:build {standard input}:9202:non-relocatable subtraction expression, "LC22" minus "L00000000021$pb"
467:info:build {standard input}:9202:symbol: "LC22" can't be undefined in a subtraction expression
468:info:build {standard input}:9199:non-relocatable subtraction expression, "LC11" minus "L00000000021$pb"
469:info:build {standard input}:9199:symbol: "LC11" can't be undefined in a subtraction expression
470:info:build {standard input}:8933:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" minus "L00000000020$pb"
471:info:build {standard input}:8933:symbol: "L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
472:info:build {standard input}:6733:non-relocatable subtraction expression, "LC12" minus "L00000000019$pb"
473:info:build {standard input}:6733:symbol: "LC12" can't be undefined in a subtraction expression
474:info:build {standard input}:6724:non-relocatable subtraction expression, "LC21" minus "L00000000019$pb"
475:info:build {standard input}:6724:symbol: "LC21" can't be undefined in a subtraction expression
476:info:build {standard input}:6718:non-relocatable subtraction expression, "LC20" minus "L00000000019$pb"
477:info:build {standard input}:6718:symbol: "LC20" can't be undefined in a subtraction expression
478:info:build {standard input}:6716:non-relocatable subtraction expression, "LC19" minus "L00000000019$pb"
479:info:build {standard input}:6716:symbol: "LC19" can't be undefined in a subtraction expression
480:info:build {standard input}:6710:non-relocatable subtraction expression, "LC11" minus "L00000000019$pb"
481:info:build {standard input}:6710:symbol: "LC11" can't be undefined in a subtraction expression
482:info:build {standard input}:6700:non-relocatable subtraction expression, "LC6" minus "L00000000019$pb"
483:info:build {standard input}:6700:symbol: "LC6" can't be undefined in a subtraction expression
484:info:build {standard input}:6696:non-relocatable subtraction expression, "LC18" minus "L00000000019$pb"
485:info:build {standard input}:6696:symbol: "LC18" can't be undefined in a subtraction expression
486:info:build {standard input}:6693:non-relocatable subtraction expression, "LC11" minus "L00000000019$pb"
487:info:build {standard input}:6693:symbol: "LC11" can't be undefined in a subtraction expression
488:info:build {standard input}:5646:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000018$pb"
489:info:build {standard input}:5646:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
490:info:build {standard input}:5643:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000018$pb"
491:info:build {standard input}:5643:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
492:info:build {standard input}:4557:non-relocatable subtraction expression, "LC18" minus "L00000000017$pb"
493:info:build {standard input}:4557:symbol: "LC18" can't be undefined in a subtraction expression
494:info:build {standard input}:4550:non-relocatable subtraction expression, "LC11" minus "L00000000017$pb"
495:info:build {standard input}:4550:symbol: "LC11" can't be undefined in a subtraction expression
496:info:build {standard input}:3613:non-relocatable subtraction expression, "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" minus "L00000000016$pb"
497:info:build {standard input}:3613:symbol: "L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr" can't be undefined in a subtraction expression
498:info:build {standard input}:2717:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000015$pb"
499:info:build {standard input}:2717:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
500:info:build {standard input}:1477:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" minus "L00000000014$pb"
501:info:build {standard input}:1477:symbol: "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
502:info:build {standard input}:1474:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" minus "L00000000014$pb"
503:info:build {standard input}:1474:symbol: "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
504:info:build {standard input}:1387:non-relocatable subtraction expression, "L__ZSt4cerr$non_lazy_ptr" minus "L00000000013$pb"
505:info:build {standard input}:1387:symbol: "L__ZSt4cerr$non_lazy_ptr" can't be undefined in a subtraction expression
506:info:build {standard input}:1281:non-relocatable subtraction expression, "LC13" minus "L00000000012$pb"
507:info:build {standard input}:1281:symbol: "LC13" can't be undefined in a subtraction expression
508:info:build {standard input}:1271:non-relocatable subtraction expression, "LC12" minus "L00000000012$pb"
509:info:build {standard input}:1271:symbol: "LC12" can't be undefined in a subtraction expression
510:info:build {standard input}:1260:non-relocatable subtraction expression, "LC11" minus "L00000000012$pb"
511:info:build {standard input}:1260:symbol: "LC11" can't be undefined in a subtraction expression
512:info:build {standard input}:1244:non-relocatable subtraction expression, "LC10" minus "L00000000012$pb"
513:info:build {standard input}:1244:symbol: "LC10" can't be undefined in a subtraction expression
514:info:build {standard input}:1237:non-relocatable subtraction expression, "LC9" minus "L00000000012$pb"
515:info:build {standard input}:1237:symbol: "LC9" can't be undefined in a subtraction expression
516:info:build {standard input}:1225:non-relocatable subtraction expression, "LC8" minus "L00000000012$pb"
517:info:build {standard input}:1225:symbol: "LC8" can't be undefined in a subtraction expression
518:info:build {standard input}:747:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" minus "L00000000010$pb"
519:info:build {standard input}:747:symbol: "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
520:info:build {standard input}:744:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" minus "L00000000010$pb"
521:info:build {standard input}:744:symbol: "L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
522:info:build {standard input}:722:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" minus "L00000000009$pb"
523:info:build {standard input}:722:symbol: "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
524:info:build {standard input}:701:non-relocatable subtraction expression, "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" minus "L00000000008$pb"
525:info:build {standard input}:701:symbol: "L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr" can't be undefined in a subtraction expression
526:info:build {standard input}:338:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" minus "L00000000005$pb"
527:info:build {standard input}:338:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
528:info:build {standard input}:335:non-relocatable subtraction expression, "L__ZN5seqan26TranslateTableAsciiToDna5_IvE5VALUEE$non_lazy_ptr" minus "L00000000005$pb"
529:info:build {standard input}:335:symbol: "L__ZN5seqan26TranslateTableAsciiToDna5_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
530:info:build {standard input}:333:non-relocatable subtraction expression, "L__ZN5seqan35TranslateTableDna5ToDna5Complement_IvE5VALUEE$non_lazy_ptr" minus "L00000000005$pb"
531:info:build {standard input}:333:symbol: "L__ZN5seqan35TranslateTableDna5ToDna5Complement_IvE5VALUEE$non_lazy_ptr" can't be undefined in a subtraction expression
532:info:build {standard input}:331:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000005$pb"
533:info:build {standard input}:331:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
534:info:build {standard input}:328:non-relocatable subtraction expression, "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000005$pb"
535:info:build {standard input}:328:symbol: "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
536:info:build {standard input}:68:non-relocatable subtraction expression, "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000003$pb"
537:info:build {standard input}:68:symbol: "L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
538:info:build {standard input}:44:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" minus "L00000000002$pb"
539:info:build {standard input}:44:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
540:info:build {standard input}:22:non-relocatable subtraction expression, "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" minus "L00000000001$pb"
541:info:build {standard input}:22:symbol: "L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr" can't be undefined in a subtraction expression
542:info:build {standard input}:613:non-relocatable subtraction expression, "L___dso_handle$non_lazy_ptr" minus "L00000000006$pb"
543:info:build {standard input}:613:symbol: "L___dso_handle$non_lazy_ptr" can't be undefined in a subtraction expression
544:info:build {standard input}:610:non-relocatable subtraction expression, "__ZStL8__ioinit" minus "L00000000006$pb"
545:info:build {standard input}:610:symbol: "__ZStL8__ioinit" can't be undefined in a subtraction expression
546:info:build {standard input}:unknown:Undefined local symbol L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_5Dna5_EEERKNS0_IhNS_6Dna5Q_EEEE5table$non_lazy_ptr
547:info:build {standard input}:unknown:Undefined local symbol L__ZZN5seqan6assignERNS_10SimpleTypeIhNS_6Dna5Q_EEERKNS0_IhNS_5Dna5_EEEE5table$non_lazy_ptr
548:info:build {standard input}:unknown:Undefined local symbol L__ZZN5seqan15getQualityValueERKNS_10SimpleTypeIhNS_6Dna5Q_EEEE5table$non_lazy_ptr
549:info:build {standard input}:unknown:Undefined local symbol L__ZSt4cerr$non_lazy_ptr
550:info:build {standard input}:unknown:Undefined local symbol L__ZN5seqan35TranslateTableDna5ToDna5Complement_IvE5VALUEE$non_lazy_ptr
551:info:build {standard input}:unknown:Undefined local symbol L__ZN5seqan26TranslateTableAsciiToDna5_IvE5VALUEE$non_lazy_ptr
552:info:build {standard input}:unknown:Undefined local symbol L___dso_handle$non_lazy_ptr
553:info:build {standard input}:unknown:Undefined local symbol L__ZTVN5seqan4FileINS_4SyncIvEEEE$non_lazy_ptr
554:info:build {standard input}:unknown:Undefined local symbol L__ZTVN5seqan4FileINS_5AsyncIvEEEE$non_lazy_ptr
555:info:build {standard input}:unknown:Undefined local symbol LC6
556:info:build {standard input}:unknown:Undefined local symbol LC7
557:info:build {standard input}:unknown:Undefined local symbol LC8
558:info:build {standard input}:unknown:Undefined local symbol LC9
559:info:build {standard input}:unknown:Undefined local symbol LC10
560:info:build {standard input}:unknown:Undefined local symbol LC11
561:info:build {standard input}:unknown:Undefined local symbol LC12
562:info:build {standard input}:unknown:Undefined local symbol LC13
563:info:build {standard input}:unknown:Undefined local symbol L__ZNSs4_Rep20_S_empty_rep_storageE$non_lazy_ptr
564:info:build {standard input}:unknown:Undefined local symbol LC18
565:info:build {standard input}:unknown:Undefined local symbol LC19
566:info:build {standard input}:unknown:Undefined local symbol LC20
567:info:build {standard input}:unknown:Undefined local symbol LC21
568:info:build {standard input}:unknown:Undefined local symbol L__ZN5seqan26TranslateTableDna5ToAscii_IvE5VALUEE$non_lazy_ptr
569:info:build {standard input}:unknown:Undefined local symbol LC22
570:info:build {standard input}:unknown:Undefined local symbol LC23
571:info:build {standard input}:unknown:Undefined local symbol L__ZSt7nothrow$non_lazy_ptr
572:info:build make[2]: *** [apps/CMakeFiles/mason.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/mason/mason.cpp.o] Error 1
573:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
574:info:build make[1]: *** [apps/CMakeFiles/mason.dir/all] Error 2
575:info:build make[1]: *** Waiting for unfinished jobs....
576:info:build Linking CXX executable micro_razers
577:info:build cd /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/apps && /i386-10.6-mp/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1
578:info:build /usr/bin/g++-4.2   -pipe -O2 -arch i386  -W -Wall -Wno-long-long -pedantic -Wno-variadic-macros -fopenmp -DSEQAN_HAS_SAMTOOLS=1 -DSEQAN_ENABLE_TESTING=0 -O3 -DNDEBUG -DSEQAN_ENABLE_DEBUG=0 -mmacosx-version-min=10.6 -Wl,-search_paths_first -Wl,-headerpad_max_install_names  -L/i386-10.6-mp/lib -arch i386 CMakeFiles/micro_razers.dir/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/apps/micro_razers/micro_razers.cpp.o  -o micro_razers  -L/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/lib -lz
579:info:build make[2]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
580:info:build /i386-10.6-mp/bin/cmake -E cmake_progress_report /i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake/CMakeFiles
581:info:build [ 16%] Built target micro_razers
582:info:build make[1]: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
583:info:build make: *** [all] Error 2
584:info:build make: Leaving directory `/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake'
585:info:build shell command " cd "/i386-10.6-mp/var/macports/build/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/work/seqan-1.3.1/cmake" && /usr/bin/make -j2 -w all " returned error 2
586:error:build Target org.macports.build returned: shell command failed (see log for details)
587:debug:build Backtrace: shell command failed (see log for details)
588    while executing
589"command_exec build"
590    (procedure "portbuild::build_main" line 8)
591    invoked from within
592"$procedure $targetname"
593:info:build Warning: the following items did not execute (for seqan): org.macports.activate org.macports.build org.macports.destroot org.macports.install
594:notice:build Log for seqan is at: /i386-10.6-mp/var/macports/logs/_Users_rschmidt_macports_dports-clean_science_seqan/seqan/main.log