Ticket #36011: R_framework_install.log

christoph-deils-macbook:~ deil$ sudo port uninstall R
--->  Deactivating R @2.15.1_0+gcc45+recommended
--->  Cleaning R
--->  Uninstalling R @2.15.1_0+gcc45+recommended
--->  Cleaning R
christoph-deils-macbook:~ deil$ sudo port install R-framework
--->  Computing dependencies for R-framework
--->  Dependencies to be installed: llvm-gcc42 llvm-2.9
--->  Fetching archive for llvm-2.9
--->  Attempting to fetch llvm-2.9-2.9_5.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/llvm-2.9
--->  Attempting to fetch llvm-2.9-2.9_5.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/llvm-2.9
--->  Installing llvm-2.9 @2.9_5
--->  Activating llvm-2.9 @2.9_5
--->  Cleaning llvm-2.9
--->  Fetching archive for llvm-gcc42
--->  Attempting to fetch llvm-gcc42-2.9_2.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/llvm-gcc42
--->  Attempting to fetch llvm-gcc42-2.9_2.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/llvm-gcc42
--->  Installing llvm-gcc42 @2.9_2
--->  Activating llvm-gcc42 @2.9_2
--->  Cleaning llvm-gcc42
--->  Fetching archive for R-framework
--->  Attempting to fetch R-framework-2.15.1_2+cairo+llvm_gcc42+recommended+tcltk+x11.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/R-framework
--->  Attempting to fetch R-framework-2.15.1_2+cairo+llvm_gcc42+recommended+tcltk+x11.darwin_11.x86_64.tbz2 from http://packages.macports.org/R-framework
--->  Fetching distfiles for R-framework
--->  Attempting to fetch R-2.15.1.tar.gz from http://fco.it.distfiles.macports.org/mirrors/macports-distfiles/R
--->  Verifying checksum(s) for R-framework
--->  Extracting R-framework
--->  Configuring R-framework
--->  Building R-framework
--->  Staging R-framework into destroot
--->  Installing R-framework @2.15.1_2+cairo+llvm_gcc42+recommended+tcltk+x11
--->  Activating R-framework @2.15.1_2+cairo+llvm_gcc42+recommended+tcltk+x11
--->  Cleaning R-framework
--->  Updating database of binaries: 100.0%
--->  Scanning binaries for linking errors: 100.0%
--->  Found 379 broken file(s), matching files to ports
--->  Found 42 broken port(s), determining rebuild order
--->  Rebuilding in order
     gutenprint @5.2.7 
     gtkimageview @1.6.4 
     gtk-nodoka-engine @0.7.5 
     goocanvas @0.15 
     py27-cairo @1.8.10 
     vte @0.28.2 +python27
     ddd @3.3.12 
     libgnomecanvas @2.30.3 
     webp @0.2.0 
     libwmf @0.2.8.4 
     xsane @0.998 
     gdl @2.30.1 
     libgnomeui @2.24.5 
     gtksourceview2 @2.10.5 
     opencv @2.4.2 
     py27-yt @2.3 
     libbonoboui @2.24.5 
     openjpeg @1.5.0 
     ufraw @0.18 
     libopenraw @0.0.9 
     libsdl_image @1.2.12 
     libglade2 @2.6.4 
     wxWidgets @2.8.12 
     libgda4 @4.2.13 
     glade3 @3.8.2 +python27
     libgsf @1.14.22 
     qt4-mac @4.8.2 +quartz
     dvipng @1.14 
     openmotif @2.3.3 
     gegl @0.2.0 +python27
     GraphicsMagick @1.3.16 +q8
     texlive-bin @2012 +x11
     anjuta @2.30.2.1 
     gnuplot @4.6.0 +luaterm+pangocairo
     ghostscript @9.05 
     py27-matplotlib @1.1.1 +cairo+gtk2+latex
     poppler @0.20.3 
     librsvg @2.36.1 +quartz
     graphviz @2.28.0 +ruby
     gimp2 @2.8.0 +help_browser+python27
     gtk3 @3.4.4 +x11
     root @5.34.01 +cocoa+fftw3+fitsio+graphviz+gsl+minuit2+mysql+opengl+roofit+ruby+soversion+ssl+tmva+xml
--->  Computing dependencies for gutenprint
--->  Cleaning gutenprint
--->  Computing dependencies for gtkimageview
--->  Cleaning gtkimageview
--->  Computing dependencies for gtk-nodoka-engine
--->  Cleaning gtk-nodoka-engine
--->  Computing dependencies for goocanvas
--->  Fetching archive for goocanvas
--->  Attempting to fetch goocanvas-0.15_2.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/goocanvas
--->  Attempting to fetch goocanvas-0.15_2.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/goocanvas
--->  Installing goocanvas @0.15_2
--->  Cleaning goocanvas
--->  Computing dependencies for goocanvas
--->  Deactivating goocanvas @0.15_1
--->  Cleaning goocanvas
--->  Activating goocanvas @0.15_2
--->  Cleaning goocanvas
--->  Computing dependencies for py27-cairo
--->  Fetching archive for py27-cairo
--->  Attempting to fetch py27-cairo-1.8.10_2.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-cairo
--->  Attempting to fetch py27-cairo-1.8.10_2.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/py27-cairo
--->  Installing py27-cairo @1.8.10_2
--->  Cleaning py27-cairo
--->  Computing dependencies for py27-cairo
--->  Deactivating py27-cairo @1.8.10_1
--->  Cleaning py27-cairo
--->  Activating py27-cairo @1.8.10_2
--->  Cleaning py27-cairo
--->  Computing dependencies for vte
--->  Fetching archive for vte
--->  Attempting to fetch vte-0.28.2_1+python27.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/vte
--->  Attempting to fetch vte-0.28.2_1+python27.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/vte
--->  Installing vte @0.28.2_1+python27
--->  Cleaning vte
--->  Computing dependencies for vte
--->  Deactivating vte @0.28.2_0+python27
--->  Cleaning vte
--->  Activating vte @0.28.2_1+python27
--->  Cleaning vte
--->  Computing dependencies for ddd
--->  Cleaning ddd
--->  Computing dependencies for libgnomecanvas
--->  Fetching archive for libgnomecanvas
--->  Attempting to fetch libgnomecanvas-2.30.3_3.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/libgnomecanvas
--->  Attempting to fetch libgnomecanvas-2.30.3_3.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/libgnomecanvas
--->  Installing libgnomecanvas @2.30.3_3
--->  Cleaning libgnomecanvas
--->  Computing dependencies for libgnomecanvas
--->  Deactivating libgnomecanvas @2.30.3_2
--->  Cleaning libgnomecanvas
--->  Activating libgnomecanvas @2.30.3_3
--->  Cleaning libgnomecanvas
--->  Computing dependencies for webp
--->  Fetching archive for webp
--->  Attempting to fetch webp-0.2.0_1.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/webp
--->  Attempting to fetch webp-0.2.0_1.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/webp
--->  Installing webp @0.2.0_1
--->  Cleaning webp
--->  Computing dependencies for webp
--->  Deactivating webp @0.2.0_0
--->  Cleaning webp
--->  Activating webp @0.2.0_1
--->  Cleaning webp
--->  Computing dependencies for libwmf
--->  Fetching archive for libwmf
--->  Attempting to fetch libwmf-0.2.8.4_6.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/libwmf
--->  Attempting to fetch libwmf-0.2.8.4_6.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/libwmf
--->  Installing libwmf @0.2.8.4_6
--->  Cleaning libwmf
--->  Computing dependencies for libwmf
--->  Deactivating libwmf @0.2.8.4_5
--->  Cleaning libwmf
--->  Activating libwmf @0.2.8.4_6
--->  Cleaning libwmf
--->  Computing dependencies for xsane
--->  Cleaning xsane
--->  Computing dependencies for gdl
--->  Cleaning gdl
--->  Computing dependencies for libgnomeui
--->  Fetching archive for libgnomeui
--->  Attempting to fetch libgnomeui-2.24.5_4.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/libgnomeui
--->  Attempting to fetch libgnomeui-2.24.5_4.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/libgnomeui
--->  Installing libgnomeui @2.24.5_4
--->  Cleaning libgnomeui
--->  Computing dependencies for libgnomeui
--->  Deactivating libgnomeui @2.24.5_3
--->  Cleaning libgnomeui
--->  Activating libgnomeui @2.24.5_4
--->  Cleaning libgnomeui
--->  Computing dependencies for gtksourceview2
--->  Fetching archive for gtksourceview2
--->  Attempting to fetch gtksourceview2-2.10.5_4.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/gtksourceview2
--->  Attempting to fetch gtksourceview2-2.10.5_4.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/gtksourceview2
--->  Installing gtksourceview2 @2.10.5_4
--->  Cleaning gtksourceview2
--->  Computing dependencies for gtksourceview2
--->  Deactivating gtksourceview2 @2.10.5_3
--->  Cleaning gtksourceview2
--->  Activating gtksourceview2 @2.10.5_4
--->  Cleaning gtksourceview2
--->  Computing dependencies for opencv
--->  Fetching archive for opencv
--->  Attempting to fetch opencv-2.4.2_1.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/opencv
--->  Attempting to fetch opencv-2.4.2_1.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/opencv
--->  Installing opencv @2.4.2_1
--->  Cleaning opencv
--->  Computing dependencies for opencv
--->  Deactivating opencv @2.4.2_0
--->  Cleaning opencv
--->  Activating opencv @2.4.2_1
--->  Cleaning opencv
--->  Computing dependencies for py27-yt
--->  Cleaning py27-yt
--->  Computing dependencies for libbonoboui
--->  Fetching archive for libbonoboui
--->  Attempting to fetch libbonoboui-2.24.5_4.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/libbonoboui
--->  Attempting to fetch libbonoboui-2.24.5_4.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/libbonoboui
--->  Installing libbonoboui @2.24.5_4
--->  Cleaning libbonoboui
--->  Computing dependencies for libbonoboui
--->  Deactivating libbonoboui @2.24.5_3
--->  Cleaning libbonoboui
--->  Activating libbonoboui @2.24.5_4
--->  Cleaning libbonoboui
--->  Computing dependencies for openjpeg
--->  Fetching archive for openjpeg
--->  Attempting to fetch openjpeg-1.5.0_3.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/openjpeg
--->  Attempting to fetch openjpeg-1.5.0_3.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/openjpeg
--->  Installing openjpeg @1.5.0_3
--->  Cleaning openjpeg
--->  Computing dependencies for openjpeg
--->  Deactivating openjpeg @1.5.0_2
--->  Cleaning openjpeg
--->  Activating openjpeg @1.5.0_3
--->  Cleaning openjpeg
--->  Computing dependencies for ufraw
--->  Cleaning ufraw
--->  Computing dependencies for libopenraw
--->  Fetching archive for libopenraw
--->  Attempting to fetch libopenraw-0.0.9_2.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/libopenraw
--->  Attempting to fetch libopenraw-0.0.9_2.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/libopenraw
--->  Installing libopenraw @0.0.9_2
--->  Cleaning libopenraw
--->  Computing dependencies for libopenraw
--->  Deactivating libopenraw @0.0.9_1
--->  Cleaning libopenraw
--->  Activating libopenraw @0.0.9_2
--->  Cleaning libopenraw
--->  Computing dependencies for libsdl_image
--->  Fetching archive for libsdl_image
--->  Attempting to fetch libsdl_image-1.2.12_1.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/libsdl_image
--->  Attempting to fetch libsdl_image-1.2.12_1.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/libsdl_image
--->  Installing libsdl_image @1.2.12_1
--->  Cleaning libsdl_image
--->  Computing dependencies for libsdl_image
--->  Deactivating libsdl_image @1.2.12_0
--->  Cleaning libsdl_image
--->  Activating libsdl_image @1.2.12_1
--->  Cleaning libsdl_image
--->  Computing dependencies for libglade2
--->  Fetching archive for libglade2
--->  Attempting to fetch libglade2-2.6.4_6.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/libglade2
--->  Attempting to fetch libglade2-2.6.4_6.darwin_11.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/libglade2
--->  Installing libglade2 @2.6.4_6
--->  Cleaning libglade2
--->  Computing dependencies for libglade2
--->  Deactivating libglade2 @2.6.4_5
--->  Cleaning libglade2
--->  Activating libglade2 @2.6.4_6
--->  Cleaning libglade2
--->  Computing dependencies for wxWidgets
--->  Fetching archive for wxWidgets
--->  Attempting to fetch wxWidgets-2.8.12_1.darwin_11.i386.tbz2 from http://lil.fr.packages.macports.org/wxWidgets
--->  Attempting to fetch wxWidgets-2.8.12_1.darwin_11.i386.tbz2 from http://packages.macports.org/wxWidgets
--->  Fetching distfiles for wxWidgets
--->  Attempting to fetch wxWidgets-2.8.12.tar.bz2 from http://dfn.dl.sourceforge.net/wxwindows
--->  Verifying checksum(s) for wxWidgets
--->  Extracting wxWidgets
--->  Applying patches to wxWidgets
--->  Configuring wxWidgets
Error: org.macports.configure for port wxWidgets returned: configure failure: command execution failed
Please see the log file for port wxWidgets for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_graphics_wxWidgets/wxWidgets/main.log
Error: Unable to upgrade port: 1
Error rebuilding wxWidgets
    while executing
"error "Error rebuilding $portname""
    (procedure "revupgrade_scanandrebuild" line 370)
    invoked from within
"revupgrade_scanandrebuild broken_port_counts $opts"
    (procedure "macports::revupgrade" line 5)
    invoked from within
"macports::revupgrade $opts"
    (procedure "action_revupgrade" line 2)
    invoked from within
"action_revupgrade $action $portlist $opts"
    (procedure "action_target" line 94)
    invoked from within
"$action_proc $action $portlist [array get global_options]"
    (procedure "process_cmd" line 95)
    invoked from within
"process_cmd $remaining_args"
    invoked from within
"if { [llength $remaining_args] > 0 } {

    # If there are remaining arguments, process those as a command
    set exit_status [process_cmd $remaining..."
    (file "/opt/local/bin/port" line 4784)