Ticket #36547: main.log

File main.log, 19.1 KB (added by semelipap@…, 12 years ago)
Line 
1version:1
2:debug:main epoch: in tree: 0 installed: 0
3:debug:main fftw-3 3.3.2_1 exists in the ports tree
4:debug:main fftw-3 3.3.2_1  is the latest installed
5:debug:main fftw-3 3.3.2_1  is active
6:debug:main Merging existing variants '' into variants
7:debug:main new fully merged portvariants:
8:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/fftw-3
9:debug:main OS darwin/10.8.0 (Mac OS X 10.6) arch i386
10:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
11:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
12:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
13:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
14:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
15:debug:main universal variant already exists, so not adding the default one
16:debug:main No need to upgrade! fftw-3 3.3.2_1 >= fftw-3 3.3.2_1
17:debug:main epoch: in tree: 0 installed: 0
18:debug:main atlas 3.10.0_1 exists in the ports tree
19:debug:main atlas 3.10.0_1 +gcc45 is the latest installed
20:debug:main atlas 3.10.0_1 +gcc45 is active
21:debug:main Merging existing variants '+gcc45' into variants
22:debug:main new fully merged portvariants: gcc45 +
23:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/atlas
24:debug:main OS darwin/10.8.0 (Mac OS X 10.6) arch i386
25:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
26:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
27:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
28:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
29:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
30:debug:main universal variant already exists, so not adding the default one
31:debug:main Executing variant gcc45 provides gcc45
32:debug:main No need to upgrade! atlas 3.10.0_1 >= atlas 3.10.0_1
33:msg:main --->  Computing dependencies for sextractor:info:main .:debug:main sextractor has no conflicts
34:debug:main Searching for dependency: fftw-3
35:debug:main Found Dependency: receipt exists for fftw-3
36:debug:main Searching for dependency: atlas
37:debug:main Found Dependency: receipt exists for atlas
38:msg:main
39:debug:main Executing org.macports.main (sextractor)
40:debug:main changing euid/egid - current euid: 0 - current egid: 0
41:debug:main egid changed to: 501
42:debug:main euid changed to: 502
43:debug:main Skipping completed org.macports.archivefetch (sextractor)
44:debug:main Privilege de-escalation not attempted as not running as root.
45:debug:main Skipping completed org.macports.fetch (sextractor)
46:debug:main Privilege de-escalation not attempted as not running as root.
47:debug:main Skipping completed org.macports.checksum (sextractor)
48:debug:main Privilege de-escalation not attempted as not running as root.
49:debug:main Skipping completed org.macports.extract (sextractor)
50:debug:main Privilege de-escalation not attempted as not running as root.
51:debug:main Skipping completed org.macports.patch (sextractor)
52:debug:main Privilege de-escalation not attempted as not running as root.
53:debug:configure configure phase started at Tue Oct  9 12:14:13 BST 2012
54:notice:configure --->  Configuring sextractor
55:debug:configure Using compiler 'Mac OS X gcc 4.2'
56:debug:configure Executing org.macports.configure (sextractor)
57:debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -I/opt/local/include -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.6' CXX='/usr/bin/g++-4.2' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' FCFLAGS='-pipe -O2 -m64' OBJC='/usr/bin/gcc-4.2' INSTALL='/usr/bin/install -c' FC='/opt/local/bin/no-possible-compiler' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/gcc-4.2'
58:debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/sextractor-2.8.6" && ./configure --prefix=/opt/local --with-atlas=/opt/local/lib --with-atlas-incdir=/opt/local/include --with-fftw=/opt/local/lib --with-fftw-incdir=/opt/local/include'
59:debug:configure Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/sextractor-2.8.6" && ./configure --prefix=/opt/local --with-atlas=/opt/local/lib --with-atlas-incdir=/opt/local/include --with-fftw=/opt/local/lib --with-fftw-incdir=/opt/local/include
60:info:configure checking for a BSD-compatible install... /usr/bin/install -c
61:info:configure checking whether build environment is sane... yes
62:info:configure checking for a thread-safe mkdir -p... autoconf/install-sh -c -d
63:info:configure checking for gawk... gawk
64:info:configure checking whether make sets $(MAKE)... yes
65:info:configure *********** Configuring:  sextractor 2.8.6 (2012-10-09) **********
66:info:configure checking for Linux Intel C compiler mode... no
67:info:configure checking for C compiler default output file name... a.out
68:info:configure checking whether the C compiler works... yes
69:info:configure checking whether we are cross compiling... no
70:info:configure checking for suffix of executables...
71:info:configure checking for suffix of object files... o
72:info:configure checking whether we are using the GNU C compiler... yes
73:info:configure checking whether /usr/bin/gcc-4.2 accepts -g... yes
74:info:configure checking for /usr/bin/gcc-4.2 option to accept ISO C89... none needed
75:info:configure checking for style of include used by make... GNU
76:info:configure checking dependency style of /usr/bin/gcc-4.2... gcc3
77:info:configure checking for gcc... /usr/bin/gcc-4.2
78:info:configure checking whether we are using the GNU C compiler... (cached) yes
79:info:configure checking whether /usr/bin/gcc-4.2 accepts -g... (cached) yes
80:info:configure checking for /usr/bin/gcc-4.2 option to accept ISO C89... (cached) none needed
81:info:configure checking dependency style of /usr/bin/gcc-4.2... (cached) gcc3
82:info:configure checking for library containing strerror... none required
83:info:configure checking for C compiler optimization flags... -O3 -g -funroll-loops -fomit-frame-pointer -Wall
84:info:configure checking build system type... i386-apple-darwin10.8.0
85:info:configure checking host system type... i386-apple-darwin10.8.0
86:info:configure checking for a sed that does not truncate output... /opt/local/bin/gsed
87:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
88:info:configure checking for egrep... /usr/bin/grep -E
89:info:configure checking for ld used by /usr/bin/gcc-4.2... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld
90:info:configure checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no
91:info:configure checking for /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld option to reload object files... -r
92:info:configure checking for BSD-compatible nm... /opt/local/bin/nm
93:info:configure checking whether ln -s works... yes
94:info:configure checking how to recognize dependent libraries... pass_all
95:info:configure checking how to run the C preprocessor... /usr/bin/gcc-4.2 -E
96:info:configure checking for ANSI C header files... yes
97:info:configure checking for sys/types.h... yes
98:info:configure checking for sys/stat.h... yes
99:info:configure checking for stdlib.h... yes
100:info:configure checking for string.h... yes
101:info:configure checking for memory.h... yes
102:info:configure checking for strings.h... yes
103:info:configure checking for inttypes.h... yes
104:info:configure checking for stdint.h... yes
105:info:configure checking for unistd.h... yes
106:info:configure checking dlfcn.h usability... yes
107:info:configure checking dlfcn.h presence... yes
108:info:configure checking for dlfcn.h... yes
109:info:configure checking whether we are using the GNU C++ compiler... yes
110:info:configure checking whether /usr/bin/g++-4.2 accepts -g... yes
111:info:configure checking dependency style of /usr/bin/g++-4.2... gcc3
112:info:configure checking how to run the C++ preprocessor... /usr/bin/g++-4.2 -E
113:info:configure checking for g77... no
114:info:configure checking for xlf... no
115:info:configure checking for f77... no
116:info:configure checking for frt... no
117:info:configure checking for pgf77... no
118:info:configure checking for cf77... no
119:info:configure checking for fort77... no
120:info:configure checking for fl32... no
121:info:configure checking for af77... no
122:info:configure checking for xlf90... no
123:info:configure checking for f90... no
124:info:configure checking for pgf90... no
125:info:configure checking for pghpf... no
126:info:configure checking for epcf90... no
127:info:configure checking for gfortran... gfortran
128:info:configure checking whether we are using the GNU Fortran 77 compiler... yes
129:info:configure checking whether gfortran accepts -g... yes
130:info:configure checking the maximum length of command line arguments... 196608
131:info:configure checking command to parse /opt/local/bin/nm output from /usr/bin/gcc-4.2 object... rm: conftest.dSYM: is a directory
132:info:configure rm: conftest.dSYM: is a directory
133:info:configure rm: conftest.dSYM: is a directory
134:info:configure rm: conftest.dSYM: is a directory
135:info:configure ok
136:info:configure checking for objdir... .libs
137:info:configure checking for ar... ar
138:info:configure checking for ranlib... ranlib
139:info:configure checking for strip... strip
140:info:configure rm: conftest.dSYM: is a directory
141:info:configure rm: conftest.dSYM: is a directory
142:info:configure checking if /usr/bin/gcc-4.2 supports -fno-rtti -fno-exceptions... rm: conftest.dSYM: is a directory
143:info:configure no
144:info:configure checking for /usr/bin/gcc-4.2 option to produce PIC... -fno-common
145:info:configure checking if /usr/bin/gcc-4.2 PIC flag -fno-common works... rm: conftest.dSYM: is a directory
146:info:configure yes
147:info:configure checking if /usr/bin/gcc-4.2 static flag -static works... rm: conftest.dSYM: is a directory
148:info:configure no
149:info:configure checking if /usr/bin/gcc-4.2 supports -c -o file.o... rm: conftest.dSYM: is a directory
150:info:configure yes
151:info:configure checking whether the /usr/bin/gcc-4.2 linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
152:info:configure checking dynamic linker characteristics... darwin10.8.0 dyld
153:info:configure checking how to hardcode library paths into programs... immediate
154:info:configure checking whether stripping libraries is possible... yes
155:info:configure checking if libtool supports shared libraries... yes
156:info:configure checking whether to build shared libraries... yes
157:info:configure checking whether to build static libraries... no
158:info:configure configure: creating libtool
159:info:configure appending configuration tag "CXX" to libtool
160:info:configure rm: conftest.dSYM: is a directory
161:info:configure rm: conftest.dSYM: is a directory
162:info:configure checking for ld used by /usr/bin/g++-4.2... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld
163:info:configure checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no
164:info:configure checking whether the /usr/bin/g++-4.2 linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
165:info:configure checking for /usr/bin/g++-4.2 option to produce PIC... -fno-common
166:info:configure checking if /usr/bin/g++-4.2 PIC flag -fno-common works... rm: conftest.dSYM: is a directory
167:info:configure yes
168:info:configure checking if /usr/bin/g++-4.2 static flag -static works... rm: conftest.dSYM: is a directory
169:info:configure no
170:info:configure checking if /usr/bin/g++-4.2 supports -c -o file.o... rm: conftest.dSYM: is a directory
171:info:configure yes
172:info:configure checking whether the /usr/bin/g++-4.2 linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
173:info:configure checking dynamic linker characteristics... darwin10.8.0 dyld
174:info:configure checking how to hardcode library paths into programs... immediate
175:info:configure appending configuration tag "F77" to libtool
176:info:configure rm: conftest.dSYM: is a directory
177:info:configure rm: conftest.dSYM: is a directory
178:info:configure checking if libtool supports shared libraries... yes
179:info:configure checking whether to build shared libraries... yes
180:info:configure checking whether to build static libraries... no
181:info:configure checking for gfortran option to produce PIC... -fno-common
182:info:configure checking if gfortran PIC flag -fno-common works... rm: conftest.dSYM: is a directory
183:info:configure yes
184:info:configure checking if gfortran static flag -static works... rm: conftest.dSYM: is a directory
185:info:configure no
186:info:configure checking if gfortran supports -c -o file.o... rm: conftest.dSYM: is a directory
187:info:configure yes
188:info:configure checking whether the gfortran linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes
189:info:configure checking dynamic linker characteristics... darwin10.8.0 dyld
190:info:configure checking how to hardcode library paths into programs... immediate
191:info:configure checking for a BSD-compatible install... /usr/bin/install -c
192:info:configure checking for sin in -lm... yes
193:info:configure checking for ANSI C header files... (cached) yes
194:info:configure checking fcntl.h usability... yes
195:info:configure checking fcntl.h presence... yes
196:info:configure checking for fcntl.h... yes
197:info:configure checking limits.h usability... yes
198:info:configure checking limits.h presence... yes
199:info:configure checking for limits.h... yes
200:info:configure checking malloc.h usability... no
201:info:configure checking malloc.h presence... no
202:info:configure checking for malloc.h... no
203:info:configure checking for stdlib.h... (cached) yes
204:info:configure checking for string.h... (cached) yes
205:info:configure checking sys/mman.h usability... yes
206:info:configure checking sys/mman.h presence... yes
207:info:configure checking for sys/mman.h... yes
208:info:configure checking for sys/types.h... (cached) yes
209:info:configure checking for unistd.h... (cached) yes
210:info:configure checking for an ANSI C-conforming const... yes
211:info:configure checking for off_t... yes
212:info:configure checking for size_t... yes
213:info:configure checking whether struct tm is in sys/time.h or time.h... time.h
214:info:configure checking for uid_t in sys/types.h... rm: conftest.dSYM: is a directory
215:info:configure yes
216:info:configure checking for error_at_line... no
217:info:configure checking for stdlib.h... (cached) yes
218:info:configure checking for unistd.h... (cached) yes
219:info:configure checking for getpagesize... yes
220:info:configure checking for working mmap... yes
221:info:configure checking return type of signal handlers... void
222:info:configure checking whether lstat dereferences a symlink specified with a trailing slash... no
223:info:configure checking whether stat accepts an empty string... no
224:info:configure checking for strftime... yes
225:info:configure checking for atexit... yes
226:info:configure checking for getenv... yes
227:info:configure checking for memcpy... yes
228:info:configure checking for memmove... yes
229:info:configure checking for memset... yes
230:info:configure checking for mkdir... yes
231:info:configure checking for munmap... yes
232:info:configure checking for strstr... yes
233:info:configure checking for sincos... no
234:info:configure checking for logf... yes
235:info:configure checking for special C compiler options needed for large files... no
236:info:configure checking for _FILE_OFFSET_BITS value needed for large files... no
237:info:configure rm: conftest.dSYM: is a directory
238:info:configure checking for _LARGEFILE_SOURCE value needed for large files... no
239:info:configure rm: conftest.dSYM: is a directory
240:info:configure checking for gprof profiler mode... no
241:info:configure checking static linking... yes
242:info:configure checking for multithreading... maximum of 16 thread(s)
243:info:configure checking pthread.h usability... yes
244:info:configure checking pthread.h presence... yes
245:info:configure checking for pthread.h... yes
246:info:configure checking for the pthreads library -lpthreads... no
247:info:configure checking whether pthreads work without any flags... yes
248:info:configure checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE
249:info:configure checking if more special flags are required for pthreads... no
250:info:configure checking for cc_r... /usr/bin/gcc-4.2
251:info:configure checking /opt/local/include/fftw3.h usability... yes
252:info:configure checking /opt/local/include/fftw3.h presence... yes
253:info:configure checking for /opt/local/include/fftw3.h... yes
254:info:configure checking for fftw_execute in -lfftw3... yes
255:info:configure checking for fftw_init_threads in -lfftw3_threads... yes
256:info:configure checking /opt/local/include/cblas.h usability... yes
257:info:configure checking /opt/local/include/cblas.h presence... yes
258:info:configure checking for /opt/local/include/cblas.h... yes
259:info:configure checking /opt/local/include/clapack.h usability... yes
260:info:configure checking /opt/local/include/clapack.h presence... yes
261:info:configure checking for /opt/local/include/clapack.h... yes
262:info:configure checking for clapack_dpotrf in -llapack... no
263:info:configure checking for cblas_dgemm in -lcblas... yes
264:info:configure checking for clapack_dpotrf in -llapack... no
265:info:configure checking for cblas_dgemm in -lcblas... yes
266:info:configure configure: error: CBLAS/LAPack library files not found in /opt/local/lib! Exiting.
267:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/sextractor-2.8.6" && ./configure --prefix=/opt/local --with-atlas=/opt/local/lib --with-atlas-incdir=/opt/local/include --with-fftw=/opt/local/lib --with-fftw-incdir=/opt/local/include
268:info:configure Exit code: 1
269:error:configure org.macports.configure for port sextractor returned: configure failure: command execution failed
270:debug:configure Error code: NONE
271:debug:configure Backtrace: configure failure: command execution failed
272    while executing
273"$procedure $targetname"
274:info:configure Warning: targets not executed for sextractor: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install
275:notice:configure Please see the log file for port sextractor for details:
276    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/main.log