1 | version:1 |
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2 | :debug:main epoch: in tree: 0 installed: 0 |
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3 | :debug:main fftw-3 3.3.2_1 exists in the ports tree |
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4 | :debug:main fftw-3 3.3.2_1 is the latest installed |
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5 | :debug:main fftw-3 3.3.2_1 is active |
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6 | :debug:main Merging existing variants '' into variants |
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7 | :debug:main new fully merged portvariants: |
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8 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/fftw-3 |
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9 | :debug:main OS darwin/10.8.0 (Mac OS X 10.6) arch i386 |
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10 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
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11 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
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12 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
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13 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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14 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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15 | :debug:main universal variant already exists, so not adding the default one |
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16 | :debug:main No need to upgrade! fftw-3 3.3.2_1 >= fftw-3 3.3.2_1 |
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17 | :debug:main epoch: in tree: 0 installed: 0 |
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18 | :debug:main atlas 3.10.0_1 exists in the ports tree |
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19 | :debug:main atlas 3.10.0_1 +gcc45 is the latest installed |
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20 | :debug:main atlas 3.10.0_1 +gcc45 is active |
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21 | :debug:main Merging existing variants '+gcc45' into variants |
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22 | :debug:main new fully merged portvariants: gcc45 + |
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23 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/math/atlas |
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24 | :debug:main OS darwin/10.8.0 (Mac OS X 10.6) arch i386 |
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25 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
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26 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
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27 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
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28 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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29 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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30 | :debug:main universal variant already exists, so not adding the default one |
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31 | :debug:main Executing variant gcc45 provides gcc45 |
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32 | :debug:main No need to upgrade! atlas 3.10.0_1 >= atlas 3.10.0_1 |
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33 | :msg:main ---> Computing dependencies for sextractor:info:main .:debug:main sextractor has no conflicts |
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34 | :debug:main Searching for dependency: fftw-3 |
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35 | :debug:main Found Dependency: receipt exists for fftw-3 |
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36 | :debug:main Searching for dependency: atlas |
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37 | :debug:main Found Dependency: receipt exists for atlas |
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38 | :msg:main |
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39 | :debug:main Executing org.macports.main (sextractor) |
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40 | :debug:main changing euid/egid - current euid: 0 - current egid: 0 |
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41 | :debug:main egid changed to: 501 |
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42 | :debug:main euid changed to: 502 |
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43 | :debug:main Skipping completed org.macports.archivefetch (sextractor) |
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44 | :debug:main Privilege de-escalation not attempted as not running as root. |
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45 | :debug:main Skipping completed org.macports.fetch (sextractor) |
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46 | :debug:main Privilege de-escalation not attempted as not running as root. |
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47 | :debug:main Skipping completed org.macports.checksum (sextractor) |
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48 | :debug:main Privilege de-escalation not attempted as not running as root. |
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49 | :debug:main Skipping completed org.macports.extract (sextractor) |
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50 | :debug:main Privilege de-escalation not attempted as not running as root. |
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51 | :debug:main Skipping completed org.macports.patch (sextractor) |
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52 | :debug:main Privilege de-escalation not attempted as not running as root. |
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53 | :debug:configure configure phase started at Tue Oct 9 12:14:13 BST 2012 |
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54 | :notice:configure ---> Configuring sextractor |
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55 | :debug:configure Using compiler 'Mac OS X gcc 4.2' |
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56 | :debug:configure Executing org.macports.configure (sextractor) |
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57 | :debug:configure Environment: CPATH='/opt/local/include' CFLAGS='-pipe -O2 -I/opt/local/include -arch x86_64' CPPFLAGS='-I/opt/local/include' CXXFLAGS='-pipe -O2 -arch x86_64' LIBRARY_PATH='/opt/local/lib' MACOSX_DEPLOYMENT_TARGET='10.6' CXX='/usr/bin/g++-4.2' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/.CC_PRINT_OPTIONS' F90FLAGS='-pipe -O2 -m64' LDFLAGS='-L/opt/local/lib -arch x86_64' FCFLAGS='-pipe -O2 -m64' OBJC='/usr/bin/gcc-4.2' INSTALL='/usr/bin/install -c' FC='/opt/local/bin/no-possible-compiler' OBJCFLAGS='-pipe -O2 -arch x86_64' FFLAGS='-pipe -O2 -m64' CC_PRINT_OPTIONS='YES' CC='/usr/bin/gcc-4.2' |
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58 | :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/sextractor-2.8.6" && ./configure --prefix=/opt/local --with-atlas=/opt/local/lib --with-atlas-incdir=/opt/local/include --with-fftw=/opt/local/lib --with-fftw-incdir=/opt/local/include' |
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59 | :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/sextractor-2.8.6" && ./configure --prefix=/opt/local --with-atlas=/opt/local/lib --with-atlas-incdir=/opt/local/include --with-fftw=/opt/local/lib --with-fftw-incdir=/opt/local/include |
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60 | :info:configure checking for a BSD-compatible install... /usr/bin/install -c |
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61 | :info:configure checking whether build environment is sane... yes |
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62 | :info:configure checking for a thread-safe mkdir -p... autoconf/install-sh -c -d |
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63 | :info:configure checking for gawk... gawk |
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64 | :info:configure checking whether make sets $(MAKE)... yes |
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65 | :info:configure *********** Configuring: sextractor 2.8.6 (2012-10-09) ********** |
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66 | :info:configure checking for Linux Intel C compiler mode... no |
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67 | :info:configure checking for C compiler default output file name... a.out |
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68 | :info:configure checking whether the C compiler works... yes |
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69 | :info:configure checking whether we are cross compiling... no |
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70 | :info:configure checking for suffix of executables... |
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71 | :info:configure checking for suffix of object files... o |
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72 | :info:configure checking whether we are using the GNU C compiler... yes |
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73 | :info:configure checking whether /usr/bin/gcc-4.2 accepts -g... yes |
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74 | :info:configure checking for /usr/bin/gcc-4.2 option to accept ISO C89... none needed |
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75 | :info:configure checking for style of include used by make... GNU |
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76 | :info:configure checking dependency style of /usr/bin/gcc-4.2... gcc3 |
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77 | :info:configure checking for gcc... /usr/bin/gcc-4.2 |
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78 | :info:configure checking whether we are using the GNU C compiler... (cached) yes |
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79 | :info:configure checking whether /usr/bin/gcc-4.2 accepts -g... (cached) yes |
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80 | :info:configure checking for /usr/bin/gcc-4.2 option to accept ISO C89... (cached) none needed |
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81 | :info:configure checking dependency style of /usr/bin/gcc-4.2... (cached) gcc3 |
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82 | :info:configure checking for library containing strerror... none required |
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83 | :info:configure checking for C compiler optimization flags... -O3 -g -funroll-loops -fomit-frame-pointer -Wall |
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84 | :info:configure checking build system type... i386-apple-darwin10.8.0 |
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85 | :info:configure checking host system type... i386-apple-darwin10.8.0 |
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86 | :info:configure checking for a sed that does not truncate output... /opt/local/bin/gsed |
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87 | :info:configure checking for grep that handles long lines and -e... /usr/bin/grep |
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88 | :info:configure checking for egrep... /usr/bin/grep -E |
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89 | :info:configure checking for ld used by /usr/bin/gcc-4.2... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld |
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90 | :info:configure checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no |
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91 | :info:configure checking for /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld option to reload object files... -r |
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92 | :info:configure checking for BSD-compatible nm... /opt/local/bin/nm |
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93 | :info:configure checking whether ln -s works... yes |
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94 | :info:configure checking how to recognize dependent libraries... pass_all |
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95 | :info:configure checking how to run the C preprocessor... /usr/bin/gcc-4.2 -E |
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96 | :info:configure checking for ANSI C header files... yes |
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97 | :info:configure checking for sys/types.h... yes |
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98 | :info:configure checking for sys/stat.h... yes |
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99 | :info:configure checking for stdlib.h... yes |
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100 | :info:configure checking for string.h... yes |
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101 | :info:configure checking for memory.h... yes |
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102 | :info:configure checking for strings.h... yes |
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103 | :info:configure checking for inttypes.h... yes |
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104 | :info:configure checking for stdint.h... yes |
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105 | :info:configure checking for unistd.h... yes |
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106 | :info:configure checking dlfcn.h usability... yes |
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107 | :info:configure checking dlfcn.h presence... yes |
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108 | :info:configure checking for dlfcn.h... yes |
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109 | :info:configure checking whether we are using the GNU C++ compiler... yes |
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110 | :info:configure checking whether /usr/bin/g++-4.2 accepts -g... yes |
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111 | :info:configure checking dependency style of /usr/bin/g++-4.2... gcc3 |
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112 | :info:configure checking how to run the C++ preprocessor... /usr/bin/g++-4.2 -E |
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113 | :info:configure checking for g77... no |
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114 | :info:configure checking for xlf... no |
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115 | :info:configure checking for f77... no |
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116 | :info:configure checking for frt... no |
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117 | :info:configure checking for pgf77... no |
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118 | :info:configure checking for cf77... no |
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119 | :info:configure checking for fort77... no |
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120 | :info:configure checking for fl32... no |
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121 | :info:configure checking for af77... no |
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122 | :info:configure checking for xlf90... no |
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123 | :info:configure checking for f90... no |
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124 | :info:configure checking for pgf90... no |
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125 | :info:configure checking for pghpf... no |
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126 | :info:configure checking for epcf90... no |
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127 | :info:configure checking for gfortran... gfortran |
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128 | :info:configure checking whether we are using the GNU Fortran 77 compiler... yes |
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129 | :info:configure checking whether gfortran accepts -g... yes |
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130 | :info:configure checking the maximum length of command line arguments... 196608 |
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131 | :info:configure checking command to parse /opt/local/bin/nm output from /usr/bin/gcc-4.2 object... rm: conftest.dSYM: is a directory |
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132 | :info:configure rm: conftest.dSYM: is a directory |
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133 | :info:configure rm: conftest.dSYM: is a directory |
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134 | :info:configure rm: conftest.dSYM: is a directory |
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135 | :info:configure ok |
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136 | :info:configure checking for objdir... .libs |
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137 | :info:configure checking for ar... ar |
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138 | :info:configure checking for ranlib... ranlib |
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139 | :info:configure checking for strip... strip |
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140 | :info:configure rm: conftest.dSYM: is a directory |
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141 | :info:configure rm: conftest.dSYM: is a directory |
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142 | :info:configure checking if /usr/bin/gcc-4.2 supports -fno-rtti -fno-exceptions... rm: conftest.dSYM: is a directory |
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143 | :info:configure no |
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144 | :info:configure checking for /usr/bin/gcc-4.2 option to produce PIC... -fno-common |
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145 | :info:configure checking if /usr/bin/gcc-4.2 PIC flag -fno-common works... rm: conftest.dSYM: is a directory |
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146 | :info:configure yes |
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147 | :info:configure checking if /usr/bin/gcc-4.2 static flag -static works... rm: conftest.dSYM: is a directory |
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148 | :info:configure no |
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149 | :info:configure checking if /usr/bin/gcc-4.2 supports -c -o file.o... rm: conftest.dSYM: is a directory |
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150 | :info:configure yes |
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151 | :info:configure checking whether the /usr/bin/gcc-4.2 linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes |
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152 | :info:configure checking dynamic linker characteristics... darwin10.8.0 dyld |
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153 | :info:configure checking how to hardcode library paths into programs... immediate |
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154 | :info:configure checking whether stripping libraries is possible... yes |
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155 | :info:configure checking if libtool supports shared libraries... yes |
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156 | :info:configure checking whether to build shared libraries... yes |
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157 | :info:configure checking whether to build static libraries... no |
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158 | :info:configure configure: creating libtool |
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159 | :info:configure appending configuration tag "CXX" to libtool |
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160 | :info:configure rm: conftest.dSYM: is a directory |
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161 | :info:configure rm: conftest.dSYM: is a directory |
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162 | :info:configure checking for ld used by /usr/bin/g++-4.2... /usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld |
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163 | :info:configure checking if the linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) is GNU ld... no |
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164 | :info:configure checking whether the /usr/bin/g++-4.2 linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes |
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165 | :info:configure checking for /usr/bin/g++-4.2 option to produce PIC... -fno-common |
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166 | :info:configure checking if /usr/bin/g++-4.2 PIC flag -fno-common works... rm: conftest.dSYM: is a directory |
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167 | :info:configure yes |
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168 | :info:configure checking if /usr/bin/g++-4.2 static flag -static works... rm: conftest.dSYM: is a directory |
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169 | :info:configure no |
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170 | :info:configure checking if /usr/bin/g++-4.2 supports -c -o file.o... rm: conftest.dSYM: is a directory |
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171 | :info:configure yes |
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172 | :info:configure checking whether the /usr/bin/g++-4.2 linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes |
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173 | :info:configure checking dynamic linker characteristics... darwin10.8.0 dyld |
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174 | :info:configure checking how to hardcode library paths into programs... immediate |
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175 | :info:configure appending configuration tag "F77" to libtool |
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176 | :info:configure rm: conftest.dSYM: is a directory |
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177 | :info:configure rm: conftest.dSYM: is a directory |
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178 | :info:configure checking if libtool supports shared libraries... yes |
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179 | :info:configure checking whether to build shared libraries... yes |
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180 | :info:configure checking whether to build static libraries... no |
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181 | :info:configure checking for gfortran option to produce PIC... -fno-common |
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182 | :info:configure checking if gfortran PIC flag -fno-common works... rm: conftest.dSYM: is a directory |
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183 | :info:configure yes |
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184 | :info:configure checking if gfortran static flag -static works... rm: conftest.dSYM: is a directory |
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185 | :info:configure no |
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186 | :info:configure checking if gfortran supports -c -o file.o... rm: conftest.dSYM: is a directory |
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187 | :info:configure yes |
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188 | :info:configure checking whether the gfortran linker (/usr/libexec/gcc/i686-apple-darwin10/4.2.1/ld) supports shared libraries... yes |
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189 | :info:configure checking dynamic linker characteristics... darwin10.8.0 dyld |
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190 | :info:configure checking how to hardcode library paths into programs... immediate |
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191 | :info:configure checking for a BSD-compatible install... /usr/bin/install -c |
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192 | :info:configure checking for sin in -lm... yes |
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193 | :info:configure checking for ANSI C header files... (cached) yes |
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194 | :info:configure checking fcntl.h usability... yes |
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195 | :info:configure checking fcntl.h presence... yes |
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196 | :info:configure checking for fcntl.h... yes |
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197 | :info:configure checking limits.h usability... yes |
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198 | :info:configure checking limits.h presence... yes |
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199 | :info:configure checking for limits.h... yes |
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200 | :info:configure checking malloc.h usability... no |
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201 | :info:configure checking malloc.h presence... no |
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202 | :info:configure checking for malloc.h... no |
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203 | :info:configure checking for stdlib.h... (cached) yes |
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204 | :info:configure checking for string.h... (cached) yes |
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205 | :info:configure checking sys/mman.h usability... yes |
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206 | :info:configure checking sys/mman.h presence... yes |
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207 | :info:configure checking for sys/mman.h... yes |
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208 | :info:configure checking for sys/types.h... (cached) yes |
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209 | :info:configure checking for unistd.h... (cached) yes |
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210 | :info:configure checking for an ANSI C-conforming const... yes |
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211 | :info:configure checking for off_t... yes |
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212 | :info:configure checking for size_t... yes |
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213 | :info:configure checking whether struct tm is in sys/time.h or time.h... time.h |
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214 | :info:configure checking for uid_t in sys/types.h... rm: conftest.dSYM: is a directory |
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215 | :info:configure yes |
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216 | :info:configure checking for error_at_line... no |
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217 | :info:configure checking for stdlib.h... (cached) yes |
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218 | :info:configure checking for unistd.h... (cached) yes |
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219 | :info:configure checking for getpagesize... yes |
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220 | :info:configure checking for working mmap... yes |
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221 | :info:configure checking return type of signal handlers... void |
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222 | :info:configure checking whether lstat dereferences a symlink specified with a trailing slash... no |
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223 | :info:configure checking whether stat accepts an empty string... no |
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224 | :info:configure checking for strftime... yes |
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225 | :info:configure checking for atexit... yes |
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226 | :info:configure checking for getenv... yes |
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227 | :info:configure checking for memcpy... yes |
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228 | :info:configure checking for memmove... yes |
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229 | :info:configure checking for memset... yes |
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230 | :info:configure checking for mkdir... yes |
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231 | :info:configure checking for munmap... yes |
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232 | :info:configure checking for strstr... yes |
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233 | :info:configure checking for sincos... no |
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234 | :info:configure checking for logf... yes |
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235 | :info:configure checking for special C compiler options needed for large files... no |
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236 | :info:configure checking for _FILE_OFFSET_BITS value needed for large files... no |
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237 | :info:configure rm: conftest.dSYM: is a directory |
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238 | :info:configure checking for _LARGEFILE_SOURCE value needed for large files... no |
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239 | :info:configure rm: conftest.dSYM: is a directory |
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240 | :info:configure checking for gprof profiler mode... no |
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241 | :info:configure checking static linking... yes |
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242 | :info:configure checking for multithreading... maximum of 16 thread(s) |
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243 | :info:configure checking pthread.h usability... yes |
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244 | :info:configure checking pthread.h presence... yes |
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245 | :info:configure checking for pthread.h... yes |
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246 | :info:configure checking for the pthreads library -lpthreads... no |
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247 | :info:configure checking whether pthreads work without any flags... yes |
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248 | :info:configure checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE |
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249 | :info:configure checking if more special flags are required for pthreads... no |
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250 | :info:configure checking for cc_r... /usr/bin/gcc-4.2 |
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251 | :info:configure checking /opt/local/include/fftw3.h usability... yes |
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252 | :info:configure checking /opt/local/include/fftw3.h presence... yes |
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253 | :info:configure checking for /opt/local/include/fftw3.h... yes |
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254 | :info:configure checking for fftw_execute in -lfftw3... yes |
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255 | :info:configure checking for fftw_init_threads in -lfftw3_threads... yes |
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256 | :info:configure checking /opt/local/include/cblas.h usability... yes |
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257 | :info:configure checking /opt/local/include/cblas.h presence... yes |
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258 | :info:configure checking for /opt/local/include/cblas.h... yes |
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259 | :info:configure checking /opt/local/include/clapack.h usability... yes |
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260 | :info:configure checking /opt/local/include/clapack.h presence... yes |
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261 | :info:configure checking for /opt/local/include/clapack.h... yes |
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262 | :info:configure checking for clapack_dpotrf in -llapack... no |
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263 | :info:configure checking for cblas_dgemm in -lcblas... yes |
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264 | :info:configure checking for clapack_dpotrf in -llapack... no |
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265 | :info:configure checking for cblas_dgemm in -lcblas... yes |
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266 | :info:configure configure: error: CBLAS/LAPack library files not found in /opt/local/lib! Exiting. |
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267 | :info:configure Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/work/sextractor-2.8.6" && ./configure --prefix=/opt/local --with-atlas=/opt/local/lib --with-atlas-incdir=/opt/local/include --with-fftw=/opt/local/lib --with-fftw-incdir=/opt/local/include |
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268 | :info:configure Exit code: 1 |
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269 | :error:configure org.macports.configure for port sextractor returned: configure failure: command execution failed |
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270 | :debug:configure Error code: NONE |
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271 | :debug:configure Backtrace: configure failure: command execution failed |
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272 | while executing |
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273 | "$procedure $targetname" |
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274 | :info:configure Warning: targets not executed for sextractor: org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install |
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275 | :notice:configure Please see the log file for port sextractor for details: |
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276 | /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_sextractor/sextractor/main.log |
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