| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | |
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| 3 | PortSystem 1.0 |
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| 4 | |
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| 5 | name bwa |
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| 6 | version 0.7.3a |
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| 7 | categories science |
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| 8 | platforms darwin |
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| 9 | maintainers openmaintainer node99.org:sean |
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| 10 | |
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| 11 | homepage http://bio-bwa.sourceforge.net |
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| 12 | description BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. |
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| 13 | long_description BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome. It consists of three algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is designed for Illumina sequence reads up to 100bp, while the rest two for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share similar features such as long-read support and split alignment, but BWA-MEM, which is the latest, is generally recommended for high-quality queries as it is faster and more accurate. BWA-MEM also has better performance than BWA-backtrack for 70-100bp Illumina reads. |
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| 14 | |
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| 15 | master_sites sourceforge:bio-bwa |
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| 16 | use_bzip2 yes |
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| 17 | checksums rmd160 bf277dd69e0fc186f1a49d63643a3b79f56e3ef9 \ |
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| 18 | sha256 5093e39b83f64b9bb348a86d4fd129abc4797c5b4472bc110e16fc67ab920e56 |
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| 19 | use_configure no |
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| 20 | |
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| 21 | destroot { |
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| 22 | eval xinstall -m 755 ${worksrcpath}/bwa ${destroot}${prefix}/bin |
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| 23 | } |
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