Ticket #38398: Portfile.2

File Portfile.2, 1.7 KB (added by sean@…, 12 years ago)

Updated

Line 
1# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
2# $Id$
3
4PortSystem          1.0
5
6name                bwa
7version             0.7.3a
8categories          science
9platforms           darwin
10license             GPL-3
11
12homepage            http://bio-bwa.sourceforge.net
13description         BWA is a software package for mapping low-divergent sequences against a large reference genome, such as the human genome.
14long_description    BWA is a software package for mapping low-divergent sequences against \
15                    a large reference genome, such as the human genome. It consists of three \
16                    algorithms: BWA-backtrack, BWA-SW and BWA-MEM. The first algorithm is \
17                    designed for Illumina sequence reads up to 100bp, while the rest two \
18                    for longer sequences ranged from 70bp to 1Mbp. BWA-MEM and BWA-SW share \
19                    similar features such as long-read support and split alignment, but BWA-MEM, \
20                    which is the latest, is generally recommended for high-quality queries as it \
21                    is faster and more accurate. BWA-MEM also has better performance than \
22                    BWA-backtrack for 70-100bp Illumina reads.
23maintainers         node99.org:sean openmaintainer
24
25master_sites        sourceforge:bio-bwa
26use_bzip2           yes
27checksums           rmd160 bf277dd69e0fc186f1a49d63643a3b79f56e3ef9 \
28                    sha256 5093e39b83f64b9bb348a86d4fd129abc4797c5b4472bc110e16fc67ab920e56
29use_configure       no
30
31destroot {
32    eval xinstall -m 755 ${worksrcpath}/bwa ${destroot}${prefix}/bin
33}