Ticket #38399: Portfile.2

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
# $Id$

PortSystem          1.0

name                velvet
version             1.2.08
categories          science
platforms           darwin
license             GPL-3

homepage            http://www.ebi.ac.uk/~zerbino/velvet
description         Velvet is a set of algorithms manipulating de Bruijn graphs for genomic and de novo transcriptomic Sequence assembly.
long_description    Velvet is a set of algorithms manipulating de Bruijn graphs \
                    for genomic and de novo transcriptomic Sequence assembly. It was designed \
                    for short read sequencing technologies, such as Solexa or 454 Sequencing \
                    and was developed by Daniel Zerbino and Ewan Birney at the European \
                    Bioinformatics Institute. The tool takes in short read sequences, removes \
                    errors then produces high quality unique contigs. It then uses paired-end \
                    read and long read information, when available, to retrieve the repeated \
                    areas between contigs. It has also been implemented inside of commercial \
                    packages, such as the Geneious Server.
maintainers         node99.org:sean openmaintainer

master_sites        http://www.ebi.ac.uk/~zerbino/velvet
distname            ${name}_${version}
extract.suffix      .tgz
checksums           rmd160 03fe8348293d039dc4f93f691f3456fc2e2bacd5 \
                    sha256 1caf3fff54f264641a6bdd2ebd2e418f275703ed46debaf12b582c64daca3a57
worksrcdir          velvet
use_configure       no
build.target        velvetg velveth
compiler.blacklist  clang
build.args-append   CC=${configure.cc} \
                    CXX=${configure.cxx} \
                    CPP=${configure.cpp}

destroot {
    xinstall -W ${worksrcpath} velvetg velveth ${destroot}${prefix}/bin
}