| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | # $Id$ |
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| 3 | |
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| 4 | PortSystem 1.0 |
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| 5 | |
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| 6 | name intrinsic-noise-analyzer |
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| 7 | version 0.4.1 |
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| 8 | categories science |
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| 9 | platforms darwin |
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| 10 | |
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| 11 | maintainers gmail.com:hmatuschek |
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| 12 | |
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| 13 | description The intrinsic noise analyzer for biochemical reaction networks. |
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| 14 | long_description iNA is a computational tool for quantitative analysis of fluctuations in \ |
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| 15 | biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to \ |
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| 16 | the stochastic nature of chemical reactions and cannot be ignored when some molecules are \ |
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| 17 | present in very low copy numbers only, as is the case in living cells. The SBML-based software \ |
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| 18 | computes statistical measures such as means and standard deviations of concentrations within a \ |
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| 19 | given accuracy. This is carried out automatically using the system size expansion whose leading \ |
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| 20 | order term is the popular Linear Noise Approximation. The results of the analysis can be tested \ |
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| 21 | against the computationally much more expensive stochastic simulation algorithm. |
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| 22 | |
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| 23 | license GPL-2 |
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| 24 | |
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| 25 | homepage http://code.google.com/p/intrinsic-noise-analyzer |
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| 26 | master_sites http://intrinsic-noise-analyzer.googlecode.com/files/ |
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| 27 | |
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| 28 | checksums md5 b45e3e0b2ac26b2dc6d3025f3b34acea \ |
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| 29 | sha1 359cbb9847b7b0ba6ea9038b97ea70303120818c \ |
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| 30 | rmd160 a441f30ea8d32e0788e00615e531094e011e2895 |
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| 31 | |
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| 32 | depends_lib port:libsbml \ |
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| 33 | port:qt4-mac \ |
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| 34 | port:GiNaC \ |
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| 35 | port:llvm-3.2 |
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| 36 | |
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| 37 | depends_build port:cmake |
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| 38 | |
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| 39 | configure.cmd cmake |
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| 40 | configure.pre_args -DCMAKE_INSTALL_PREFIX=${prefix} |
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| 41 | configure.args -DCMAKE_VERBOSE_MAKEFILE=ON \ |
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| 42 | -DCMAKE_COLOR_MAKEFILE=OFF \ |
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| 43 | -DCMAKE_BUILD_TYPE=Release \ |
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| 44 | -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON \ |
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| 45 | -DCMAKE_INSTALL_NAME_DIR=${prefix}/lib \ |
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| 46 | -DCMAKE_SYSTEM_PREFIX_PATH=\"${prefix}\;/usr\" |
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| 47 | |
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| 48 | configure.args-append ../ina_src |
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| 49 | |
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| 50 | # Phase modifications |
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| 51 | # Move source into ina_src; configure & build (out-of-source) in ${workpath} |
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| 52 | post-extract { |
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| 53 | # Rename extracted directory |
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| 54 | move ${workpath}/${name}-${version} ${workpath}/ina_src |
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| 55 | } |
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| 56 | |
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| 57 | post-patch { |
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| 58 | file mkdir ${workpath}/${name}-${version} |
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| 59 | } |
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