| 1 | version:1 |
|---|
| 2 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 3 | :debug:main zlib 1.2.7_0 exists in the ports tree |
|---|
| 4 | :debug:main zlib 1.2.7_0 is the latest installed |
|---|
| 5 | :debug:main zlib 1.2.7_0 is active |
|---|
| 6 | :debug:main Merging existing variants '' into variants |
|---|
| 7 | :debug:main new fully merged portvariants: |
|---|
| 8 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib |
|---|
| 9 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 10 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 11 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 12 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 13 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl |
|---|
| 14 | :debug:main adding the default universal variant |
|---|
| 15 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 16 | :debug:main No need to upgrade! zlib 1.2.7_0 >= zlib 1.2.7_0 |
|---|
| 17 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 18 | :debug:main samtools 0.1.18_0 exists in the ports tree |
|---|
| 19 | :debug:main samtools 0.1.18_0 is the latest installed |
|---|
| 20 | :debug:main samtools 0.1.18_0 is active |
|---|
| 21 | :debug:main Merging existing variants '' into variants |
|---|
| 22 | :debug:main new fully merged portvariants: |
|---|
| 23 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/samtools |
|---|
| 24 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 25 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 26 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 27 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 28 | :debug:main universal_variant is false, so not adding the default universal variant |
|---|
| 29 | :debug:main No need to upgrade! samtools 0.1.18_0 >= samtools 0.1.18_0 |
|---|
| 30 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 31 | :debug:main ncurses 5.9_2 exists in the ports tree |
|---|
| 32 | :debug:main ncurses 5.9_2 is the latest installed |
|---|
| 33 | :debug:main ncurses 5.9_2 is active |
|---|
| 34 | :debug:main Merging existing variants '' into variants |
|---|
| 35 | :debug:main new fully merged portvariants: |
|---|
| 36 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses |
|---|
| 37 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 38 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 39 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 40 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 41 | :debug:main adding the default universal variant |
|---|
| 42 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 43 | :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2 |
|---|
| 44 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 45 | :debug:main boost 1.53.0_1 exists in the ports tree |
|---|
| 46 | :debug:main boost 1.53.0_1 +no_single+no_static+python27 is the latest installed |
|---|
| 47 | :debug:main boost 1.53.0_1 +no_single+no_static+python27 is active |
|---|
| 48 | :debug:main Merging existing variants '+no_single+no_static+python27' into variants |
|---|
| 49 | :debug:main new fully merged portvariants: no_static + no_single + python27 + |
|---|
| 50 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/boost |
|---|
| 51 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 52 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 53 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 54 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 55 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 56 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 57 | :debug:main Executing variant python27 provides python27 |
|---|
| 58 | :debug:main Executing variant no_static provides no_static |
|---|
| 59 | :debug:main Executing variant no_single provides no_single |
|---|
| 60 | :debug:main No need to upgrade! boost 1.53.0_1 >= boost 1.53.0_1 |
|---|
| 61 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 62 | :debug:main expat 2.1.0_0 exists in the ports tree |
|---|
| 63 | :debug:main expat 2.1.0_0 is the latest installed |
|---|
| 64 | :debug:main expat 2.1.0_0 is active |
|---|
| 65 | :debug:main Merging existing variants '' into variants |
|---|
| 66 | :debug:main new fully merged portvariants: |
|---|
| 67 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat |
|---|
| 68 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 69 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 70 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 71 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 72 | :debug:main adding the default universal variant |
|---|
| 73 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 74 | :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0 |
|---|
| 75 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 76 | :debug:main bzip2 1.0.6_0 exists in the ports tree |
|---|
| 77 | :debug:main bzip2 1.0.6_0 is the latest installed |
|---|
| 78 | :debug:main bzip2 1.0.6_0 is active |
|---|
| 79 | :debug:main Merging existing variants '' into variants |
|---|
| 80 | :debug:main new fully merged portvariants: |
|---|
| 81 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2 |
|---|
| 82 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 83 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 84 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 85 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 86 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 87 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 88 | :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0 |
|---|
| 89 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 90 | :debug:main libiconv 1.14_0 exists in the ports tree |
|---|
| 91 | :debug:main libiconv 1.14_0 is the latest installed |
|---|
| 92 | :debug:main libiconv 1.14_0 is active |
|---|
| 93 | :debug:main Merging existing variants '' into variants |
|---|
| 94 | :debug:main new fully merged portvariants: |
|---|
| 95 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv |
|---|
| 96 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 97 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 98 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 99 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 100 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 101 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 102 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 103 | :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0 |
|---|
| 104 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 105 | :debug:main icu 49.1.2_1 exists in the ports tree |
|---|
| 106 | :debug:main icu 49.1.2_1 is the latest installed |
|---|
| 107 | :debug:main icu 49.1.2_1 is active |
|---|
| 108 | :debug:main Merging existing variants '' into variants |
|---|
| 109 | :debug:main new fully merged portvariants: |
|---|
| 110 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/icu |
|---|
| 111 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 112 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 113 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 114 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 115 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 116 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 117 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 118 | :debug:main No need to upgrade! icu 49.1.2_1 >= icu 49.1.2_1 |
|---|
| 119 | :debug:main epoch: in tree: 2 installed: 2 |
|---|
| 120 | :debug:main python27 2.7.3_1 exists in the ports tree |
|---|
| 121 | :debug:main python27 2.7.3_1 is the latest installed |
|---|
| 122 | :debug:main python27 2.7.3_1 is active |
|---|
| 123 | :debug:main Merging existing variants '' into variants |
|---|
| 124 | :debug:main new fully merged portvariants: |
|---|
| 125 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27 |
|---|
| 126 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 127 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 128 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 129 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 130 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl |
|---|
| 131 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 132 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 133 | :debug:main No need to upgrade! python27 2.7.3_1 >= python27 2.7.3_1 |
|---|
| 134 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 135 | :debug:main gettext 0.18.2.1_0 exists in the ports tree |
|---|
| 136 | :debug:main gettext 0.18.2.1_0 is the latest installed |
|---|
| 137 | :debug:main gettext 0.18.2.1_0 is active |
|---|
| 138 | :debug:main Merging existing variants '' into variants |
|---|
| 139 | :debug:main new fully merged portvariants: |
|---|
| 140 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext |
|---|
| 141 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 142 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 143 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 144 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 145 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl |
|---|
| 146 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 147 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 148 | :debug:main compiler clang 425.0.24 not blacklisted because does not match {clang < 211.10.1} |
|---|
| 149 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 150 | :debug:main No need to upgrade! gettext 0.18.2.1_0 >= gettext 0.18.2.1_0 |
|---|
| 151 | :debug:main epoch: in tree: 1 installed: 1 |
|---|
| 152 | :debug:main openssl 1.0.1e_1 exists in the ports tree |
|---|
| 153 | :debug:main openssl 1.0.1e_1 is the latest installed |
|---|
| 154 | :debug:main openssl 1.0.1e_1 is active |
|---|
| 155 | :debug:main Merging existing variants '' into variants |
|---|
| 156 | :debug:main new fully merged portvariants: |
|---|
| 157 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl |
|---|
| 158 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 159 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 160 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 161 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 162 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 163 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 164 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 165 | :debug:main No need to upgrade! openssl 1.0.1e_1 >= openssl 1.0.1e_1 |
|---|
| 166 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 167 | :debug:main sqlite3 3.7.16_0 exists in the ports tree |
|---|
| 168 | :debug:main sqlite3 3.7.16_0 is the latest installed |
|---|
| 169 | :debug:main sqlite3 3.7.16_0 is active |
|---|
| 170 | :debug:main Merging existing variants '' into variants |
|---|
| 171 | :debug:main new fully merged portvariants: |
|---|
| 172 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3 |
|---|
| 173 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 174 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 175 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 176 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 177 | :debug:main adding the default universal variant |
|---|
| 178 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 179 | :debug:main No need to upgrade! sqlite3 3.7.16_0 >= sqlite3 3.7.16_0 |
|---|
| 180 | :debug:main epoch: in tree: 20090923 installed: 20090923 |
|---|
| 181 | :debug:main libedit 20121213-3.0_0 exists in the ports tree |
|---|
| 182 | :debug:main libedit 20121213-3.0_0 is the latest installed |
|---|
| 183 | :debug:main libedit 20121213-3.0_0 is active |
|---|
| 184 | :debug:main Merging existing variants '' into variants |
|---|
| 185 | :debug:main new fully merged portvariants: |
|---|
| 186 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit |
|---|
| 187 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 188 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 189 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 190 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 191 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 192 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 193 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 194 | :debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0 |
|---|
| 195 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 196 | :debug:main db46 4.6.21_7 exists in the ports tree |
|---|
| 197 | :debug:main db46 4.6.21_7 is the latest installed |
|---|
| 198 | :debug:main db46 4.6.21_7 is active |
|---|
| 199 | :debug:main Merging existing variants '' into variants |
|---|
| 200 | :debug:main new fully merged portvariants: |
|---|
| 201 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db46 |
|---|
| 202 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 203 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 204 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 205 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 206 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 207 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 208 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 209 | :debug:main No need to upgrade! db46 4.6.21_7 >= db46 4.6.21_7 |
|---|
| 210 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 211 | :debug:main python_select 0.3_2 exists in the ports tree |
|---|
| 212 | :debug:main python_select 0.3_2 is the latest installed |
|---|
| 213 | :debug:main python_select 0.3_2 is active |
|---|
| 214 | :debug:main Merging existing variants '' into variants |
|---|
| 215 | :debug:main new fully merged portvariants: |
|---|
| 216 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select |
|---|
| 217 | :debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386 |
|---|
| 218 | :debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided |
|---|
| 219 | :debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided |
|---|
| 220 | :debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided |
|---|
| 221 | :debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl |
|---|
| 222 | :debug:main universal_variant is false, so not adding the default universal variant |
|---|
| 223 | :debug:main No need to upgrade! python_select 0.3_2 >= python_select 0.3_2 |
|---|
| 224 | :msg:main ---> Computing dependencies for cufflinks:info:main .:debug:main cufflinks has no conflicts |
|---|
| 225 | :debug:main Searching for dependency: zlib |
|---|
| 226 | :debug:main Found Dependency: receipt exists for zlib |
|---|
| 227 | :debug:main Searching for dependency: samtools |
|---|
| 228 | :debug:main Found Dependency: receipt exists for samtools |
|---|
| 229 | :debug:main Searching for dependency: boost |
|---|
| 230 | :debug:main Found Dependency: receipt exists for boost |
|---|
| 231 | :msg:main |
|---|
| 232 | :debug:main Executing org.macports.main (cufflinks) |
|---|
| 233 | :debug:main changing euid/egid - current euid: 0 - current egid: 0 |
|---|
| 234 | :debug:main egid changed to: 501 |
|---|
| 235 | :debug:main euid changed to: 503 |
|---|
| 236 | :debug:main Skipping completed org.macports.archivefetch (cufflinks) |
|---|
| 237 | :debug:main Privilege de-escalation not attempted as not running as root. |
|---|
| 238 | :debug:main Skipping completed org.macports.fetch (cufflinks) |
|---|
| 239 | :debug:main Privilege de-escalation not attempted as not running as root. |
|---|
| 240 | :debug:main Skipping completed org.macports.checksum (cufflinks) |
|---|
| 241 | :debug:main Privilege de-escalation not attempted as not running as root. |
|---|
| 242 | :debug:main Skipping completed org.macports.extract (cufflinks) |
|---|
| 243 | :debug:main Privilege de-escalation not attempted as not running as root. |
|---|
| 244 | :debug:main Skipping completed org.macports.patch (cufflinks) |
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| 245 | :debug:main Privilege de-escalation not attempted as not running as root. |
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| 246 | :debug:main Skipping completed org.macports.configure (cufflinks) |
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| 247 | :debug:main Privilege de-escalation not attempted as not running as root. |
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| 248 | :debug:build build phase started at Mon Apr 22 08:16:49 EDT 2013 |
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| 249 | :notice:build ---> Building cufflinks |
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| 250 | :debug:build Executing org.macports.build (cufflinks) |
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| 251 | :debug:build Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.8' |
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| 252 | :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3" && /usr/bin/make -j24 -w all' |
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| 253 | :debug:build Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3" && /usr/bin/make -j24 -w all |
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| 254 | :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3' |
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| 255 | :info:build /usr/bin/make all-recursive |
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| 256 | :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3' |
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| 257 | :info:build Making all in src |
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| 258 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3/src' |
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| 259 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT clustering.o -MD -MP -MF ".deps/clustering.Tpo" -c -o clustering.o clustering.cpp; \ |
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| 260 | :info:build then mv -f ".deps/clustering.Tpo" ".deps/clustering.Po"; else rm -f ".deps/clustering.Tpo"; exit 1; fi |
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| 261 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT differential.o -MD -MP -MF ".deps/differential.Tpo" -c -o differential.o differential.cpp; \ |
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| 262 | :info:build then mv -f ".deps/differential.Tpo" ".deps/differential.Po"; else rm -f ".deps/differential.Tpo"; exit 1; fi |
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| 263 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT common.o -MD -MP -MF ".deps/common.Tpo" -c -o common.o common.cpp; \ |
|---|
| 264 | :info:build then mv -f ".deps/common.Tpo" ".deps/common.Po"; else rm -f ".deps/common.Tpo"; exit 1; fi |
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| 265 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT assemble.o -MD -MP -MF ".deps/assemble.Tpo" -c -o assemble.o assemble.cpp; \ |
|---|
| 266 | :info:build then mv -f ".deps/assemble.Tpo" ".deps/assemble.Po"; else rm -f ".deps/assemble.Tpo"; exit 1; fi |
|---|
| 267 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT abundances.o -MD -MP -MF ".deps/abundances.Tpo" -c -o abundances.o abundances.cpp; \ |
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| 268 | :info:build then mv -f ".deps/abundances.Tpo" ".deps/abundances.Po"; else rm -f ".deps/abundances.Tpo"; exit 1; fi |
|---|
| 269 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT scaffolds.o -MD -MP -MF ".deps/scaffolds.Tpo" -c -o scaffolds.o scaffolds.cpp; \ |
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| 270 | :info:build then mv -f ".deps/scaffolds.Tpo" ".deps/scaffolds.Po"; else rm -f ".deps/scaffolds.Tpo"; exit 1; fi |
|---|
| 271 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT hits.o -MD -MP -MF ".deps/hits.Tpo" -c -o hits.o hits.cpp; \ |
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| 272 | :info:build then mv -f ".deps/hits.Tpo" ".deps/hits.Po"; else rm -f ".deps/hits.Tpo"; exit 1; fi |
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| 273 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT genes.o -MD -MP -MF ".deps/genes.Tpo" -c -o genes.o genes.cpp; \ |
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| 274 | :info:build then mv -f ".deps/genes.Tpo" ".deps/genes.Po"; else rm -f ".deps/genes.Tpo"; exit 1; fi |
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| 275 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT bundles.o -MD -MP -MF ".deps/bundles.Tpo" -c -o bundles.o bundles.cpp; \ |
|---|
| 276 | :info:build then mv -f ".deps/bundles.Tpo" ".deps/bundles.Po"; else rm -f ".deps/bundles.Tpo"; exit 1; fi |
|---|
| 277 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT filters.o -MD -MP -MF ".deps/filters.Tpo" -c -o filters.o filters.cpp; \ |
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| 278 | :info:build then mv -f ".deps/filters.Tpo" ".deps/filters.Po"; else rm -f ".deps/filters.Tpo"; exit 1; fi |
|---|
| 279 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT scaffold_graph.o -MD -MP -MF ".deps/scaffold_graph.Tpo" -c -o scaffold_graph.o scaffold_graph.cpp; \ |
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| 280 | :info:build then mv -f ".deps/scaffold_graph.Tpo" ".deps/scaffold_graph.Po"; else rm -f ".deps/scaffold_graph.Tpo"; exit 1; fi |
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| 281 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT matching_merge.o -MD -MP -MF ".deps/matching_merge.Tpo" -c -o matching_merge.o matching_merge.cpp; \ |
|---|
| 282 | :info:build then mv -f ".deps/matching_merge.Tpo" ".deps/matching_merge.Po"; else rm -f ".deps/matching_merge.Tpo"; exit 1; fi |
|---|
| 283 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT graph_optimize.o -MD -MP -MF ".deps/graph_optimize.Tpo" -c -o graph_optimize.o graph_optimize.cpp; \ |
|---|
| 284 | :info:build then mv -f ".deps/graph_optimize.Tpo" ".deps/graph_optimize.Po"; else rm -f ".deps/graph_optimize.Tpo"; exit 1; fi |
|---|
| 285 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT biascorrection.o -MD -MP -MF ".deps/biascorrection.Tpo" -c -o biascorrection.o biascorrection.cpp; \ |
|---|
| 286 | :info:build then mv -f ".deps/biascorrection.Tpo" ".deps/biascorrection.Po"; else rm -f ".deps/biascorrection.Tpo"; exit 1; fi |
|---|
| 287 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT jensen_shannon.o -MD -MP -MF ".deps/jensen_shannon.Tpo" -c -o jensen_shannon.o jensen_shannon.cpp; \ |
|---|
| 288 | :info:build then mv -f ".deps/jensen_shannon.Tpo" ".deps/jensen_shannon.Po"; else rm -f ".deps/jensen_shannon.Tpo"; exit 1; fi |
|---|
| 289 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT GFaSeqGet.o -MD -MP -MF ".deps/GFaSeqGet.Tpo" -c -o GFaSeqGet.o GFaSeqGet.cpp; \ |
|---|
| 290 | :info:build then mv -f ".deps/GFaSeqGet.Tpo" ".deps/GFaSeqGet.Po"; else rm -f ".deps/GFaSeqGet.Tpo"; exit 1; fi |
|---|
| 291 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT gff.o -MD -MP -MF ".deps/gff.Tpo" -c -o gff.o gff.cpp; \ |
|---|
| 292 | :info:build then mv -f ".deps/gff.Tpo" ".deps/gff.Po"; else rm -f ".deps/gff.Tpo"; exit 1; fi |
|---|
| 293 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT gtf_tracking.o -MD -MP -MF ".deps/gtf_tracking.Tpo" -c -o gtf_tracking.o gtf_tracking.cpp; \ |
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| 294 | :info:build then mv -f ".deps/gtf_tracking.Tpo" ".deps/gtf_tracking.Po"; else rm -f ".deps/gtf_tracking.Tpo"; exit 1; fi |
|---|
| 295 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT cufflinks.o -MD -MP -MF ".deps/cufflinks.Tpo" -c -o cufflinks.o cufflinks.cpp; \ |
|---|
| 296 | :info:build then mv -f ".deps/cufflinks.Tpo" ".deps/cufflinks.Po"; else rm -f ".deps/cufflinks.Tpo"; exit 1; fi |
|---|
| 297 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT cuffcompare.o -MD -MP -MF ".deps/cuffcompare.Tpo" -c -o cuffcompare.o cuffcompare.cpp; \ |
|---|
| 298 | :info:build then mv -f ".deps/cuffcompare.Tpo" ".deps/cuffcompare.Po"; else rm -f ".deps/cuffcompare.Tpo"; exit 1; fi |
|---|
| 299 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT cuffdiff.o -MD -MP -MF ".deps/cuffdiff.Tpo" -c -o cuffdiff.o cuffdiff.cpp; \ |
|---|
| 300 | :info:build then mv -f ".deps/cuffdiff.Tpo" ".deps/cuffdiff.Po"; else rm -f ".deps/cuffdiff.Tpo"; exit 1; fi |
|---|
| 301 | :info:build if /usr/bin/clang++ -DHAVE_CONFIG_H -I. -I. -I.. -I../src -I/opt/local/include -I/usr/include -Wall -Wno-strict-aliasing -g -gdwarf-2 -Wuninitialized -arch x86_64 -O3 -pipe -O2 -arch x86_64 -DNDEBUG -pthread -I/opt/local/include -I/opt/local/include -MT gtf_to_sam.o -MD -MP -MF ".deps/gtf_to_sam.Tpo" -c -o gtf_to_sam.o gtf_to_sam.cpp; \ |
|---|
| 302 | :info:build then mv -f ".deps/gtf_to_sam.Tpo" ".deps/gtf_to_sam.Po"; else rm -f ".deps/gtf_to_sam.Tpo"; exit 1; fi |
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| 303 | :info:build In file included from GFaSeqGet.cpp:1: |
|---|
| 304 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 305 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 306 | :info:build int result=-1; |
|---|
| 307 | :info:build ^ |
|---|
| 308 | :info:build In file included from gtf_tracking.cpp:11: |
|---|
| 309 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 310 | :info:build In file included from ./gff.h:7: |
|---|
| 311 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 312 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 313 | :info:build int result=-1; |
|---|
| 314 | :info:build ^ |
|---|
| 315 | :info:build In file included from gff.cpp:1: |
|---|
| 316 | :info:build In file included from ./gff.h:7: |
|---|
| 317 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 318 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 319 | :info:build int result=-1; |
|---|
| 320 | :info:build ^ |
|---|
| 321 | :info:build In file included from cuffcompare.cpp:10: |
|---|
| 322 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 323 | :info:build In file included from ./gff.h:7: |
|---|
| 324 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 325 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 326 | :info:build int result=-1; |
|---|
| 327 | :info:build ^ |
|---|
| 328 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 329 | :info:build idxInsert(result, *item); |
|---|
| 330 | :info:build ^ |
|---|
| 331 | :info:build this-> |
|---|
| 332 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GffCDSeg>::Add' requested here |
|---|
| 333 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 334 | :info:build ^ |
|---|
| 335 | :info:build gff.cpp:1386:13: note: in instantiation of member function 'GArray<GffCDSeg>::Add' requested here |
|---|
| 336 | :info:build cds.Add(cdseg); |
|---|
| 337 | :info:build ^ |
|---|
| 338 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 339 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 340 | :info:build ^ |
|---|
| 341 | :info:build GFaSeqGet.cpp:62:17: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? |
|---|
| 342 | :info:build if (fofs!=0) { fseeko(fh,fofs,SEEK_SET); } //e.g. for offsets provided by cdbyank |
|---|
| 343 | :info:build ^~~~~~ |
|---|
| 344 | :info:build fseek |
|---|
| 345 | :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here |
|---|
| 346 | :info:build int fseek(FILE *, long, int); |
|---|
| 347 | :info:build ^ |
|---|
| 348 | :info:build GFaSeqGet.cpp:128:2: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? |
|---|
| 349 | :info:build fseeko(fh,fseqstart,SEEK_SET); |
|---|
| 350 | :info:build ^~~~~~ |
|---|
| 351 | :info:build fseek |
|---|
| 352 | :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here |
|---|
| 353 | :info:build int fseek(FILE *, long, int); |
|---|
| 354 | :info:build ^ |
|---|
| 355 | :info:build GFaSeqGet.cpp:261:3: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? |
|---|
| 356 | :info:build fseeko(fh, fstart, SEEK_SET); |
|---|
| 357 | :info:build ^~~~~~ |
|---|
| 358 | :info:build fseek |
|---|
| 359 | :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here |
|---|
| 360 | :info:build int fseek(FILE *, long, int); |
|---|
| 361 | :info:build ^ |
|---|
| 362 | :info:build GFaSeqGet.cpp:280:5: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? |
|---|
| 363 | :info:build fseeko(fh, lendlen, SEEK_CUR); |
|---|
| 364 | :info:build ^~~~~~ |
|---|
| 365 | :info:build fseek |
|---|
| 366 | :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here |
|---|
| 367 | :info:build int fseek(FILE *, long, int); |
|---|
| 368 | :info:build ^ |
|---|
| 369 | :info:build GFaSeqGet.cpp:300:5: error: use of undeclared identifier 'fseeko'; did you mean 'fseek'? |
|---|
| 370 | :info:build fseeko(fh, lendlen, SEEK_CUR); |
|---|
| 371 | :info:build ^~~~~~ |
|---|
| 372 | :info:build fseek |
|---|
| 373 | :info:build /usr/include/stdio.h:259:6: note: 'fseek' declared here |
|---|
| 374 | :info:build int fseek(FILE *, long, int); |
|---|
| 375 | :info:build ^ |
|---|
| 376 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 377 | :info:build idxInsert(result, *item); |
|---|
| 378 | :info:build ^ |
|---|
| 379 | :info:build this-> |
|---|
| 380 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 381 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 382 | :info:build ^ |
|---|
| 383 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 384 | :info:build uexons.Add(seg); |
|---|
| 385 | :info:build ^ |
|---|
| 386 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 387 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 388 | :info:build ^ |
|---|
| 389 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 390 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 391 | :info:build ^ |
|---|
| 392 | :info:build this-> |
|---|
| 393 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 394 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 395 | :info:build ^ |
|---|
| 396 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 397 | :info:build void setCapacity(int NewCapacity); |
|---|
| 398 | :info:build ^ |
|---|
| 399 | :info:build 1 warning and 1 error generated. |
|---|
| 400 | :info:build ./GList.hh:537:5: error: use of undeclared identifie1r warning and 5 errors generated. |
|---|
| 401 | :info:build 'setCapacity' |
|---|
| 402 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 403 | :info:build ^ |
|---|
| 404 | :info:build this-> |
|---|
| 405 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 406 | :info:build qmexons.Add(loc.mexons); |
|---|
| 407 | :info:build ^ |
|---|
| 408 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 409 | :info:build void setCapacity(int NewCapacity); |
|---|
| 410 | :info:build ^ |
|---|
| 411 | :info:build 1 warning and 3 errors generated. |
|---|
| 412 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 413 | :info:build idxInsert(result, *item); |
|---|
| 414 | :info:build ^ |
|---|
| 415 | :info:build this-> |
|---|
| 416 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 417 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 418 | :info:build ^ |
|---|
| 419 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 420 | :info:build uexons.Add(seg); |
|---|
| 421 | :info:build ^ |
|---|
| 422 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 423 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 424 | :info:build ^ |
|---|
| 425 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 426 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 427 | :info:build ^ |
|---|
| 428 | :info:build this-> |
|---|
| 429 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 430 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 431 | :info:build ^ |
|---|
| 432 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 433 | :info:build void setCapacity(int NewCapacity); |
|---|
| 434 | :info:build ^ |
|---|
| 435 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 436 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 437 | :info:build ^ |
|---|
| 438 | :info:build this-> |
|---|
| 439 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 440 | :info:build qmexons.Add(loc.mexons); |
|---|
| 441 | :info:build ^ |
|---|
| 442 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 443 | :info:build void setCapacity(int NewCapacity); |
|---|
| 444 | :info:build ^ |
|---|
| 445 | :info:build 1 warning and 3 errors generated. |
|---|
| 446 | :info:build make[2]: *** [gff.o] Error 1 |
|---|
| 447 | :info:build make[2]: *** Waiting for unfinished jobs.... |
|---|
| 448 | :info:build make[2]: *** [gtf_tracking.o] Error 1 |
|---|
| 449 | :info:build make[2]: *** [GFaSeqGet.o] Error 1 |
|---|
| 450 | :info:build make[2]: *** [cuffcompare.o] Error 1 |
|---|
| 451 | :info:build In file included from jensen_shannon.cpp:12: |
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| 452 | :info:build In file included from ./jensen_shannon.h:10: |
|---|
| 453 | :info:build In file included from /opt/local/include/boost/numeric/ublas/matrix.hpp:16: |
|---|
| 454 | :info:build In file included from /opt/local/include/boost/numeric/ublas/vector.hpp:19: |
|---|
| 455 | :info:build In file included from /opt/local/include/boost/numeric/ublas/storage.hpp:26: |
|---|
| 456 | :info:build /opt/local/include/boost/numeric/ublas/traits.hpp:45:27: warning: unused function 'boost_numeric_ublas_abs' [-Wunused-function] |
|---|
| 457 | :info:build template<> unsigned int boost_numeric_ublas_abs (const unsigned int& t) { |
|---|
| 458 | :info:build ^ |
|---|
| 459 | :info:build /opt/local/include/boost/numeric/ublas/traits.hpp:49:28: warning: unused function 'boost_numeric_ublas_abs' [-Wunused-function] |
|---|
| 460 | :info:build template<> unsigned long boost_numeric_ublas_abs (const unsigned long& t) { |
|---|
| 461 | :info:build ^ |
|---|
| 462 | :info:build 2 warnings generated. |
|---|
| 463 | :info:build In file included from genes.cpp:10: |
|---|
| 464 | :info:build In file included from ./genes.h:17: |
|---|
| 465 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 466 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 467 | :info:build ^ |
|---|
| 468 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 469 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 470 | :info:build ^ |
|---|
| 471 | :info:build In file included from genes.cpp:10: |
|---|
| 472 | :info:build In file included from ./genes.h:18: |
|---|
| 473 | :info:build In file included from ./abundances.h:22: |
|---|
| 474 | :info:build In file included from ./bundles.h:21: |
|---|
| 475 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 476 | :info:build In file included from ./gff.h:7: |
|---|
| 477 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 478 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 479 | :info:build int result=-1; |
|---|
| 480 | :info:build ^ |
|---|
| 481 | :info:build In file included from scaffold_graph.cpp:12: |
|---|
| 482 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 483 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 484 | :info:build ^ |
|---|
| 485 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 486 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 487 | :info:build ^ |
|---|
| 488 | :info:build In file included from differential.cpp:14: |
|---|
| 489 | :info:build In file included from ./abundances.h:21: |
|---|
| 490 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 491 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 492 | :info:build ^ |
|---|
| 493 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 494 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 495 | :info:build ^ |
|---|
| 496 | :info:build In file included from biascorrection.cpp:10: |
|---|
| 497 | :info:build In file included from ./biascorrection.h:14: |
|---|
| 498 | :info:build In file included from ./bundles.h:20: |
|---|
| 499 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 500 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 501 | :info:build ^ |
|---|
| 502 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 503 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 504 | :info:build ^ |
|---|
| 505 | :info:build In file included from differential.cpp:14: |
|---|
| 506 | :info:build In file included from ./abundances.h:22: |
|---|
| 507 | :info:build In file included from ./bundles.h:21: |
|---|
| 508 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 509 | :info:build In file included from ./gff.h:7: |
|---|
| 510 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 511 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 512 | :info:build int result=-1; |
|---|
| 513 | :info:build ^ |
|---|
| 514 | :info:build In file included from abundances.cpp:11: |
|---|
| 515 | :info:build In file included from ./abundances.h:21: |
|---|
| 516 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 517 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 518 | :info:build ^ |
|---|
| 519 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 520 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 521 | :info:build ^ |
|---|
| 522 | :info:build In file included from biascorrection.cpp:10: |
|---|
| 523 | :info:build In file included from ./biascorrection.h:14: |
|---|
| 524 | :info:build In file included from ./bundles.h:21: |
|---|
| 525 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 526 | :info:build In file included from ./gff.h:7: |
|---|
| 527 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 528 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 529 | :info:build int result=-1; |
|---|
| 530 | :info:build ^ |
|---|
| 531 | :info:build In file included from matching_merge.cpp:10: |
|---|
| 532 | :info:build In file included from ./matching_merge.h:20: |
|---|
| 533 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 534 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 535 | :info:build ^ |
|---|
| 536 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 537 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 538 | :info:build ^ |
|---|
| 539 | :info:build In file included from abundances.cpp:11: |
|---|
| 540 | :info:build In file included from ./abundances.h:22: |
|---|
| 541 | :info:build In file included from ./bundles.h:21: |
|---|
| 542 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 543 | :info:build In file included from ./gff.h:7: |
|---|
| 544 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 545 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 546 | :info:build int result=-1; |
|---|
| 547 | :info:build ^ |
|---|
| 548 | :info:build In file included from scaffolds.cpp:13: |
|---|
| 549 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 550 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 551 | :info:build ^ |
|---|
| 552 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 553 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 554 | :info:build ^ |
|---|
| 555 | :info:build scaffolds.cpp:1144:47: warning: '&&' within '||' [-Wlogical-op-parentheses] |
|---|
| 556 | :info:build if (hit.left_alignment()->antisense_align() && strand() != CUFF_REV |
|---|
| 557 | :info:build ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ |
|---|
| 558 | :info:build scaffolds.cpp:1144:47: note: place parentheses around the '&&' expression to silence this warning |
|---|
| 559 | :info:build if (hit.left_alignment()->antisense_align() && strand() != CUFF_REV |
|---|
| 560 | :info:build ^ |
|---|
| 561 | :info:build ( ) |
|---|
| 562 | :info:build scaffolds.cpp:1145:50: warning: '&&' within '||' [-Wlogical-op-parentheses] |
|---|
| 563 | :info:build || !(hit.left_alignment()->antisense_align()) && strand() == CUFF_REV) |
|---|
| 564 | :info:build ~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ |
|---|
| 565 | :info:build scaffolds.cpp:1145:50: note: place parentheses around the '&&' expression to silence this warning |
|---|
| 566 | :info:build || !(hit.left_alignment()->antisense_align()) && strand() == CUFF_REV) |
|---|
| 567 | :info:build ^ |
|---|
| 568 | :info:build ( ) |
|---|
| 569 | :info:build In file included from cuffdiff.cpp:27: |
|---|
| 570 | :info:build In file included from ./bundles.h:20: |
|---|
| 571 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 572 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 573 | :info:build ^ |
|---|
| 574 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 575 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 576 | :info:build ^ |
|---|
| 577 | :info:build In file included from filters.cpp:10: |
|---|
| 578 | :info:build In file included from ./filters.h:17: |
|---|
| 579 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 580 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 581 | :info:build ^ |
|---|
| 582 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 583 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 584 | :info:build ^ |
|---|
| 585 | :info:build In file included from cuffdiff.cpp:27: |
|---|
| 586 | :info:build In file included from ./bundles.h:21: |
|---|
| 587 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 588 | :info:build In file included from ./gff.h:7: |
|---|
| 589 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 590 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 591 | :info:build int result=-1; |
|---|
| 592 | :info:build ^ |
|---|
| 593 | :info:build In file included from gtf_to_sam.cpp:24: |
|---|
| 594 | :info:build In file included from ./bundles.h:20: |
|---|
| 595 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 596 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 597 | :info:build ^ |
|---|
| 598 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 599 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 600 | :info:build ^ |
|---|
| 601 | :info:build In file included from bundles.cpp:16: |
|---|
| 602 | :info:build In file included from ./bundles.h:20: |
|---|
| 603 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 604 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 605 | :info:build ^ |
|---|
| 606 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 607 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 608 | :info:build ^ |
|---|
| 609 | :info:build In file included from gtf_to_sam.cpp:24: |
|---|
| 610 | :info:build In file included from ./bundles.h:21: |
|---|
| 611 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 612 | :info:build In file included from ./gff.h:7: |
|---|
| 613 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 614 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 615 | :info:build int result=-1; |
|---|
| 616 | :info:build ^ |
|---|
| 617 | :info:build In file included from bundles.cpp:16: |
|---|
| 618 | :info:build In file included from ./bundles.h:21: |
|---|
| 619 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 620 | :info:build In file included from ./gff.h:7: |
|---|
| 621 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 622 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 623 | :info:build int result=-1; |
|---|
| 624 | :info:build ^ |
|---|
| 625 | :info:build In file included from filters.cpp:10: |
|---|
| 626 | :info:build In file included from ./filters.h:18: |
|---|
| 627 | :info:build In file included from ./genes.h:18: |
|---|
| 628 | :info:build In file included from ./abundances.h:22: |
|---|
| 629 | :info:build In file included from ./bundles.h:21: |
|---|
| 630 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 631 | :info:build In file included from ./gff.h:7: |
|---|
| 632 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 633 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 634 | :info:build int result=-1; |
|---|
| 635 | :info:build ^ |
|---|
| 636 | :info:build In file included from graph_optimize.cpp:13: |
|---|
| 637 | :info:build In file included from ./graph_optimize.h:17: |
|---|
| 638 | :info:build In file included from ./bundles.h:20: |
|---|
| 639 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 640 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 641 | :info:build ^ |
|---|
| 642 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 643 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 644 | :info:build ^ |
|---|
| 645 | :info:build bundles.cpp:1172:33: warning: expression result unused [-Wunused-value] |
|---|
| 646 | :info:build itr->second.fwd_strand_frags; |
|---|
| 647 | :info:build ~~~~~~~~~~~ ^~~~~~~~~~~~~~~~ |
|---|
| 648 | :info:build In file included from graph_optimize.cpp:13: |
|---|
| 649 | :info:build In file included from ./graph_optimize.h:17: |
|---|
| 650 | :info:build In file included from ./bundles.h:21: |
|---|
| 651 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 652 | :info:build In file included from ./gff.h:7: |
|---|
| 653 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 654 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 655 | :info:build int result=-1; |
|---|
| 656 | :info:build ^ |
|---|
| 657 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 658 | :info:build idxInsert(result, *item); |
|---|
| 659 | :info:build ^ |
|---|
| 660 | :info:build this-> |
|---|
| 661 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 662 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 663 | :info:build ^ |
|---|
| 664 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 665 | :info:build uexons.Add(seg); |
|---|
| 666 | :info:build ^ |
|---|
| 667 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 668 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 669 | :info:build ^ |
|---|
| 670 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 671 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 672 | :info:build ^ |
|---|
| 673 | :info:build this-> |
|---|
| 674 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 675 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 676 | :info:build ^ |
|---|
| 677 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 678 | :info:build void setCapacity(int NewCapacity); |
|---|
| 679 | :info:build ^ |
|---|
| 680 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 681 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 682 | :info:build ^ |
|---|
| 683 | :info:build this-> |
|---|
| 684 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 685 | :info:build qmexons.Add(loc.mexons); |
|---|
| 686 | :info:build ^ |
|---|
| 687 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 688 | :info:build void setCapacity(int NewCapacity); |
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| 689 | :info:build ^ |
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| 690 | :info:build In file included from assemble.cpp:48: |
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| 691 | :info:build In file included from ./assemble.h:26: |
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| 692 | :info:build In file included from ./bundles.h:20: |
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| 693 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
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| 694 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 695 | :info:build ^ |
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| 696 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
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| 697 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
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| 698 | :info:build ^ |
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| 699 | :info:build In file included from clustering.cpp:10: |
|---|
| 700 | :info:build In file included from ./clustering.h:38: |
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| 701 | :info:build In file included from ./abundances.h:21: |
|---|
| 702 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 703 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
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| 704 | :info:build ^ |
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| 705 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
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| 706 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
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| 707 | :info:build ^ |
|---|
| 708 | :info:build In file included from assemble.cpp:48: |
|---|
| 709 | :info:build In file included from ./assemble.h:26: |
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| 710 | :info:build In file included from ./bundles.h:21: |
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| 711 | :info:build In file included from ./gtf_tracking.h:12: |
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| 712 | :info:build In file included from ./gff.h:7: |
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| 713 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 714 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 715 | :info:build int result=-1; |
|---|
| 716 | :info:build ^ |
|---|
| 717 | :info:build In file included from clustering.cpp:10: |
|---|
| 718 | :info:build In file included from ./clustering.h:38: |
|---|
| 719 | :info:build In file included from ./abundances.h:22: |
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| 720 | :info:build In file included from ./bundles.h:21: |
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| 721 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 722 | :info:build In file included from ./gff.h:7: |
|---|
| 723 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 724 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 725 | :info:build int result=-1; |
|---|
| 726 | :info:build ^ |
|---|
| 727 | :info:build 2 warnings and 3 errors generated. |
|---|
| 728 | :info:build make[2]: *** [genes.o] Error 1 |
|---|
| 729 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 730 | :info:build idxInsert(result, *item); |
|---|
| 731 | :info:build ^ |
|---|
| 732 | :info:build this-> |
|---|
| 733 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 734 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 735 | :info:build ^ |
|---|
| 736 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 737 | :info:build uexons.Add(seg); |
|---|
| 738 | :info:build ^ |
|---|
| 739 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 740 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 741 | :info:build ^ |
|---|
| 742 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 743 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 744 | :info:build ^ |
|---|
| 745 | :info:build this-> |
|---|
| 746 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 747 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 748 | :info:build ^ |
|---|
| 749 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 750 | :info:build void setCapacity(int NewCapacity); |
|---|
| 751 | :info:build ^ |
|---|
| 752 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 753 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 754 | :info:build ^ |
|---|
| 755 | :info:build this-> |
|---|
| 756 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 757 | :info:build qmexons.Add(loc.mexons); |
|---|
| 758 | :info:build ^ |
|---|
| 759 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 760 | :info:build void setCapacity(int NewCapacity); |
|---|
| 761 | :info:build ^ |
|---|
| 762 | :info:build In file included from differential.cpp:15: |
|---|
| 763 | :info:build In file included from ./differential.h:23: |
|---|
| 764 | :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp:45: |
|---|
| 765 | :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17: |
|---|
| 766 | :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254:10: error: no member named 'BOOST_FOREACH' in namespace 'boost' |
|---|
| 767 | :info:build boost::foreach::tag) |
|---|
| 768 | :info:build ~~~~~~~^ |
|---|
| 769 | :info:build ./common.h:26:25: note: expanded from macro 'foreach' |
|---|
| 770 | :info:build #define foreach BOOST_FOREACH |
|---|
| 771 | :info:build ^ |
|---|
| 772 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 773 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 774 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_weight_map' [-Wunused-variable] |
|---|
| 775 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 776 | :info:build ^ |
|---|
| 777 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:63:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 778 | :info:build BOOST_BGL_ONE_PARAM_CREF(weight_map, edge_weight) \ |
|---|
| 779 | :info:build ^ |
|---|
| 780 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 781 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 782 | :info:build ^ |
|---|
| 783 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 784 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 785 | :info:build ^ |
|---|
| 786 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 787 | :info:build <scratch space>:174:1: note: expanded from macro '_' |
|---|
| 788 | :info:build _weight_map |
|---|
| 789 | :info:build ^ |
|---|
| 790 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 791 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 792 | :info:build ^ |
|---|
| 793 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 794 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 795 | :info:build ^ |
|---|
| 796 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 797 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 798 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_weight_map2' [-Wunused-variable] |
|---|
| 799 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 800 | :info:build ^ |
|---|
| 801 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:64:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 802 | :info:build BOOST_BGL_ONE_PARAM_CREF(weight_map2, edge_weight2) \ |
|---|
| 803 | :info:build ^ |
|---|
| 804 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 805 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 806 | :info:build ^ |
|---|
| 807 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 808 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 809 | :info:build ^ |
|---|
| 810 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 811 | :info:build <scratch space>:178:1: note: expanded from macro '_' |
|---|
| 812 | :info:build _weight_map2 |
|---|
| 813 | :info:build ^ |
|---|
| 814 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 815 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 816 | :info:build ^ |
|---|
| 817 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 818 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 819 | :info:build ^ |
|---|
| 820 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 821 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 822 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_map' [-Wunused-variable] |
|---|
| 823 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 824 | :info:build ^ |
|---|
| 825 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:65:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 826 | :info:build BOOST_BGL_ONE_PARAM_CREF(distance_map, vertex_distance) \ |
|---|
| 827 | :info:build ^ |
|---|
| 828 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 829 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 830 | :info:build ^ |
|---|
| 831 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 832 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 833 | :info:build ^ |
|---|
| 834 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 835 | :info:build <scratch space>:182:1: note: expanded from macro '_' |
|---|
| 836 | :info:build _distance_map |
|---|
| 837 | :info:build ^ |
|---|
| 838 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 839 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 840 | :info:build ^ |
|---|
| 841 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 842 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 843 | :info:build ^ |
|---|
| 844 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 845 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 846 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_predecessor_map' [-Wunused-variable] |
|---|
| 847 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 848 | :info:build ^ |
|---|
| 849 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:66:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 850 | :info:build BOOST_BGL_ONE_PARAM_CREF(predecessor_map, vertex_predecessor) \ |
|---|
| 851 | :info:build ^ |
|---|
| 852 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 853 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 854 | :info:build ^ |
|---|
| 855 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 856 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 857 | :info:build ^ |
|---|
| 858 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 859 | :info:build <scratch space>:186:1: note: expanded from macro '_' |
|---|
| 860 | :info:build _predecessor_map |
|---|
| 861 | :info:build ^ |
|---|
| 862 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 863 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 864 | :info:build ^ |
|---|
| 865 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 866 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 867 | :info:build ^ |
|---|
| 868 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 869 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 870 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_rank_map' [-Wunused-variable] |
|---|
| 871 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 872 | :info:build ^ |
|---|
| 873 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:67:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 874 | :info:build BOOST_BGL_ONE_PARAM_CREF(rank_map, vertex_rank) \ |
|---|
| 875 | :info:build ^ |
|---|
| 876 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 877 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 878 | :info:build ^ |
|---|
| 879 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 880 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 881 | :info:build ^ |
|---|
| 882 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 883 | :info:build <scratch space>:190:1: note: expanded from macro '_' |
|---|
| 884 | :info:build _rank_map |
|---|
| 885 | :info:build ^ |
|---|
| 886 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 887 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 888 | :info:build ^ |
|---|
| 889 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 890 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 891 | :info:build ^ |
|---|
| 892 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 893 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 894 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_root_map' [-Wunused-variable] |
|---|
| 895 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 896 | :info:build ^ |
|---|
| 897 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:68:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 898 | :info:build BOOST_BGL_ONE_PARAM_CREF(root_map, vertex_root) \ |
|---|
| 899 | :info:build ^ |
|---|
| 900 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 901 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 902 | :info:build ^ |
|---|
| 903 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 904 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 905 | :info:build ^ |
|---|
| 906 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 907 | :info:build <scratch space>:194:1: note: expanded from macro '_' |
|---|
| 908 | :info:build _root_map |
|---|
| 909 | :info:build ^ |
|---|
| 910 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 911 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 912 | :info:build ^ |
|---|
| 913 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 914 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 915 | :info:build ^ |
|---|
| 916 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 917 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 918 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edge_centrality_map' [-Wunused-variable] |
|---|
| 919 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 920 | :info:build ^ |
|---|
| 921 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:70:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 922 | :info:build BOOST_BGL_ONE_PARAM_CREF(edge_centrality_map, edge_centrality) \ |
|---|
| 923 | :info:build ^ |
|---|
| 924 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 925 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 926 | :info:build ^ |
|---|
| 927 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 928 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 929 | :info:build ^ |
|---|
| 930 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 931 | :info:build <scratch space>:202:1: note: expanded from macro '_' |
|---|
| 932 | :info:build _edge_centrality_map |
|---|
| 933 | :info:build ^ |
|---|
| 934 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 935 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 936 | :info:build ^ |
|---|
| 937 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 938 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 939 | :info:build ^ |
|---|
| 940 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 941 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 942 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_centrality_map' [-Wunused-variable] |
|---|
| 943 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 944 | :info:build ^ |
|---|
| 945 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:71:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 946 | :info:build BOOST_BGL_ONE_PARAM_CREF(centrality_map, vertex_centrality) \ |
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| 947 | :info:build ^ |
|---|
| 948 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 949 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 950 | :info:build ^ |
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| 951 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 952 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 953 | :info:build ^ |
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| 954 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 955 | :info:build <scratch space>:206:1: note: expanded from macro '_' |
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| 956 | :info:build _centrality_map |
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| 958 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 959 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 960 | :info:build ^ |
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| 961 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 962 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 963 | :info:build ^ |
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| 964 | :info:build In file included from scaffold_graph.cpp:14: |
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| 965 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 966 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_parity_map' [-Wunused-variable] |
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| 967 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 968 | :info:build ^ |
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| 969 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:72:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 970 | :info:build BOOST_BGL_ONE_PARAM_CREF(parity_map, parity_map) \ |
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| 971 | :info:build ^ |
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| 972 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 973 | :info:build In file included from cufflinks.cpp#define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 974 | :info:build ^ |
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| 975 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9:25: |
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| 976 | :info:build In file included from ./clustering.h:19: |
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| 977 | :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp: note: exp:45: |
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| 978 | :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17: |
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| 979 | :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254a:nde10: error: nod fr membomer na macrmed 'o 'BOOBOOSTST__PAFORRAMEACH' ETER_in namespacNAMe 'Eb' |
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| 980 | :info:build oost' |
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| 981 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 982 | :info:build ^ |
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| 983 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 984 | :info:build <scratch space>:210:1: note: expanded from macro '_' |
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| 985 | :info:build _parity_map |
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| 986 | :info:build ^ |
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| 987 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 988 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 989 | :info:build ^ |
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| 990 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 991 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 992 | :info:build ^ |
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| 993 | :info:build boost::foreach::tag) |
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| 994 | :info:build ~~~~~~~^ |
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| 995 | :info:build In file included from scaffold_graph.cpp./common.h:26::14: |
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| 996 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 997 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:257: warning: unus:ed var note: iabexple anded'_col for_rommap macro '' [foreach'-W |
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| 998 | :info:build unused-variable] |
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| 999 | :info:build #define foreach BOOST_FOREACH |
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| 1000 | :info:build ^ |
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| 1001 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1003 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:73:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1004 | :info:build BOOST_BGL_ONE_PARAM_CREF(color_map, vertex_color) \ |
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| 1005 | :info:build ^ |
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| 1006 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1007 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1008 | :info:build ^ |
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| 1009 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1010 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1014 | :info:build _color_map |
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| 1016 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1017 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1019 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1020 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1021 | :info:build ^ |
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| 1022 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1023 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1024 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edge_color_map' [-Wunused-variable] |
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| 1025 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1026 | :info:build ^ |
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| 1027 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:74:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1028 | :info:build BOOST_BGL_ONE_PARAM_CREF(edge_color_map, edge_color) \ |
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| 1029 | :info:build ^ |
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| 1030 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1031 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1032 | :info:build ^ |
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| 1033 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1034 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1035 | :info:build ^ |
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| 1036 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1037 | :info:build <scratch space>:8:1: note: expanded from macro '_' |
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| 1038 | :info:build _edge_color_map |
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| 1039 | :info:build ^ |
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| 1040 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1041 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1042 | :info:build ^ |
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| 1043 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1044 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1045 | :info:build ^ |
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| 1046 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1047 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1048 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_capacity_map' [-Wunused-variable] |
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| 1049 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1050 | :info:build ^ |
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| 1051 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:75:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1052 | :info:build BOOST_BGL_ONE_PARAM_CREF(capacity_map, edge_capacity) \ |
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| 1053 | :info:build ^ |
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| 1054 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1055 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1056 | :info:build ^ |
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| 1057 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1058 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1060 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1061 | :info:build <scratch space>:12:1: note: expanded from macro '_' |
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| 1062 | :info:build _capacity_map |
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| 1063 | :info:build ^ |
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| 1064 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1065 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1066 | :info:build ^ |
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| 1067 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1068 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1069 | :info:build ^ |
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| 1070 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1071 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1072 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_residual_capacity_map' [-Wunused-variable] |
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| 1073 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1074 | :info:build ^ |
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| 1075 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:76:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1076 | :info:build BOOST_BGL_ONE_PARAM_CREF(residual_capacity_map, edge_residual_capacity) \ |
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| 1077 | :info:build ^ |
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| 1078 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1079 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1080 | :info:build ^ |
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| 1081 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1082 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1084 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1085 | :info:build <scratch space>:16:1: note: expanded from macro '_' |
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| 1086 | :info:build _residual_capacity_map |
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| 1087 | :info:build ^ |
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| 1088 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1089 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1090 | :info:build ^ |
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| 1091 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1092 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1093 | :info:build ^ |
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| 1094 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1095 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1096 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_reverse_edge_map' [-Wunused-variable] |
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| 1097 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1098 | :info:build ^ |
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| 1099 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:77:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1100 | :info:build BOOST_BGL_ONE_PARAM_CREF(reverse_edge_map, edge_reverse) \ |
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| 1101 | :info:build ^ |
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| 1102 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1103 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1105 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1106 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1109 | :info:build <scratch space>:20:1: note: expanded from macro '_' |
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| 1110 | :info:build _reverse_edge_map |
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| 1111 | :info:build ^ |
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| 1112 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1113 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1114 | :info:build ^ |
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| 1115 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1116 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1117 | :info:build ^ |
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| 1118 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1119 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1120 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_discover_time_map' [-Wunused-variable] |
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| 1121 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1122 | :info:build ^ |
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| 1123 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:78:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1124 | :info:build BOOST_BGL_ONE_PARAM_CREF(discover_time_map, vertex_discover_time) \ |
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| 1126 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1127 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1128 | :info:build ^ |
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| 1129 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1130 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1133 | :info:build <scratch space>:24:1: note: expanded from macro '_' |
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| 1134 | :info:build _discover_time_map |
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| 1135 | :info:build ^ |
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| 1136 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1137 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1138 | :info:build ^ |
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| 1139 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1140 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1141 | :info:build ^ |
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| 1142 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1143 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1144 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_lowpoint_map' [-Wunused-variable] |
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| 1145 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1146 | :info:build ^ |
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| 1147 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:79:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1148 | :info:build BOOST_BGL_ONE_PARAM_CREF(lowpoint_map, vertex_lowpoint) \ |
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| 1149 | :info:build ^ |
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| 1150 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1151 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1153 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1154 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1156 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1157 | :info:build <scratch space>:28:1: note: expanded from macro '_' |
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| 1158 | :info:build _lowpoint_map |
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| 1159 | :info:build ^ |
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| 1160 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1161 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1162 | :info:build ^ |
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| 1163 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1164 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1165 | :info:build ^ |
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| 1166 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1167 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1168 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_index1_map' [-Wunused-variable] |
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| 1169 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1170 | :info:build ^ |
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| 1171 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:81:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1172 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_index1_map, vertex_index1) \ |
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| 1173 | :info:build ^ |
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| 1174 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1175 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1177 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1178 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1180 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1181 | :info:build <scratch space>:36:1: note: expanded from macro '_' |
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| 1182 | :info:build _vertex_index1_map |
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| 1184 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1185 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1186 | :info:build ^ |
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| 1187 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1188 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1190 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1191 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1192 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_index2_map' [-Wunused-variable] |
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| 1193 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1195 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:82:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1196 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_index2_map, vertex_index2) \ |
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| 1197 | :info:build ^ |
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| 1198 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1199 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1200 | :info:build ^ |
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| 1201 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1202 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1203 | :info:build ^ |
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| 1204 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1205 | :info:build <scratch space>:40:1: note: expanded from macro '_' |
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| 1206 | :info:build _vertex_index2_map |
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| 1207 | :info:build ^ |
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| 1208 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1209 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1210 | :info:build ^ |
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| 1211 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1212 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1213 | :info:build ^ |
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| 1214 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1215 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1216 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_assignment_map' [-Wunused-variable] |
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| 1217 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1218 | :info:build ^ |
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| 1219 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:83:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1220 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_assignment_map, vertex_assignment_map) \ |
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| 1221 | :info:build ^ |
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| 1222 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1223 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1224 | :info:build ^ |
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| 1225 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1226 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1227 | :info:build ^ |
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| 1228 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1229 | :info:build <scratch space>:44:1: note: expanded from macro '_' |
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| 1230 | :info:build _vertex_assignment_map |
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| 1231 | :info:build ^ |
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| 1232 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1233 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1234 | :info:build ^ |
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| 1235 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1236 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1237 | :info:build ^ |
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| 1238 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1239 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1240 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_compare' [-Wunused-variable] |
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| 1241 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1242 | :info:build ^ |
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| 1243 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:85:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1244 | :info:build BOOST_BGL_ONE_PARAM_CREF(distance_compare, distance_compare) \ |
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| 1245 | :info:build ^ |
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| 1246 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1247 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1248 | :info:build ^ |
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| 1249 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1250 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1251 | :info:build ^ |
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| 1252 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1253 | :info:build <scratch space>:52:1: note: expanded from macro '_' |
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| 1254 | :info:build _distance_compare |
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| 1255 | :info:build ^ |
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| 1256 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1257 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1258 | :info:build ^ |
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| 1259 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1260 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1261 | :info:build ^ |
|---|
| 1262 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1263 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1264 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_combine' [-Wunused-variable] |
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| 1265 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1266 | :info:build ^ |
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| 1267 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:86:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1268 | :info:build BOOST_BGL_ONE_PARAM_CREF(distance_combine, distance_combine) \ |
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| 1269 | :info:build ^ |
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| 1270 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1271 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1272 | :info:build ^ |
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| 1273 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1274 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1275 | :info:build ^ |
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| 1276 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1277 | :info:build <scratch space>:56:1: note: expanded from macro '_' |
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| 1278 | :info:build _distance_combine |
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| 1279 | :info:build ^ |
|---|
| 1280 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1281 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1282 | :info:build ^ |
|---|
| 1283 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1284 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1285 | :info:build ^ |
|---|
| 1286 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1287 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1288 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_inf' [-Wunused-variable] |
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| 1289 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1290 | :info:build ^ |
|---|
| 1291 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:87:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1292 | :info:build BOOST_BGL_ONE_PARAM_CREF(distance_inf, distance_inf) \ |
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| 1293 | :info:build ^ |
|---|
| 1294 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1295 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1296 | :info:build ^ |
|---|
| 1297 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1298 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1299 | :info:build ^ |
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| 1300 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1301 | :info:build <scratch space>:60:1: note: expanded from macro '_' |
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| 1302 | :info:build _distance_inf |
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| 1303 | :info:build ^ |
|---|
| 1304 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1305 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1306 | :info:build ^ |
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| 1307 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1308 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1309 | :info:build ^ |
|---|
| 1310 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1311 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1312 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_distance_zero' [-Wunused-variable] |
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| 1313 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1314 | :info:build ^ |
|---|
| 1315 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:88:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1316 | :info:build BOOST_BGL_ONE_PARAM_CREF(distance_zero, distance_zero) \ |
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| 1317 | :info:build ^ |
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| 1318 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1319 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1320 | :info:build ^ |
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| 1321 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1322 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1323 | :info:build ^ |
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| 1324 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1325 | :info:build <scratch space>:64:1: note: expanded from macro '_' |
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| 1326 | :info:build _distance_zero |
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| 1327 | :info:build ^ |
|---|
| 1328 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1329 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1330 | :info:build ^ |
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| 1331 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1332 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1333 | :info:build ^ |
|---|
| 1334 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1335 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1336 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edge_copy' [-Wunused-variable] |
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| 1337 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1338 | :info:build ^ |
|---|
| 1339 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:89:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1340 | :info:build BOOST_BGL_ONE_PARAM_CREF(edge_copy, edge_copy) \ |
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| 1341 | :info:build ^ |
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| 1342 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1343 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1344 | :info:build ^ |
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| 1345 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1346 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1347 | :info:build ^ |
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| 1348 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1349 | :info:build <scratch space>:68:1: note: expanded from macro '_' |
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| 1350 | :info:build _edge_copy |
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| 1351 | :info:build ^ |
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| 1352 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1353 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1354 | :info:build ^ |
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| 1355 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1356 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1357 | :info:build ^ |
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| 1358 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1359 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1360 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_copy' [-Wunused-variable] |
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| 1361 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1362 | :info:build ^ |
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| 1363 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:90:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1364 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_copy, vertex_copy) \ |
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| 1365 | :info:build ^ |
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| 1366 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1367 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1368 | :info:build ^ |
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| 1369 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1370 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1371 | :info:build ^ |
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| 1372 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1373 | :info:build <scratch space>:72:1: note: expanded from macro '_' |
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| 1374 | :info:build _vertex_copy |
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| 1375 | :info:build ^ |
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| 1376 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1377 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1378 | :info:build ^ |
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| 1379 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1380 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1381 | :info:build ^ |
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| 1382 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1383 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1384 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_buffer' [-Wunused-variable] |
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| 1385 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1386 | :info:build ^ |
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| 1387 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:91:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1388 | :info:build BOOST_BGL_ONE_PARAM_REF(buffer, buffer_param) \ |
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| 1389 | :info:build ^ |
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| 1390 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:333:44: note: expanded from macro 'BOOST_BGL_ONE_PARAM_REF' |
|---|
| 1391 | :info:build #define BOOST_BGL_ONE_PARAM_REF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1392 | :info:build ^ |
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| 1393 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1394 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1395 | :info:build ^ |
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| 1396 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1397 | :info:build <scratch space>:76:1: note: expanded from macro '_' |
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| 1398 | :info:build _buffer |
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| 1399 | :info:build ^ |
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| 1400 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1401 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1402 | :info:build ^ |
|---|
| 1403 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1404 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1405 | :info:build ^ |
|---|
| 1406 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1407 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1408 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_orig_to_copy' [-Wunused-variable] |
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| 1409 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1410 | :info:build ^ |
|---|
| 1411 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:92:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1412 | :info:build BOOST_BGL_ONE_PARAM_CREF(orig_to_copy, orig_to_copy) \ |
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| 1413 | :info:build ^ |
|---|
| 1414 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1415 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1416 | :info:build ^ |
|---|
| 1417 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1418 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1419 | :info:build ^ |
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| 1420 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1421 | :info:build <scratch space>:80:1: note: expanded from macro '_' |
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| 1422 | :info:build _orig_to_copy |
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| 1423 | :info:build ^ |
|---|
| 1424 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1425 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1426 | :info:build ^ |
|---|
| 1427 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1428 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1429 | :info:build ^ |
|---|
| 1430 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1431 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1432 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_isomorphism_map' [-Wunused-variable] |
|---|
| 1433 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1434 | :info:build ^ |
|---|
| 1435 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:93:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1436 | :info:build BOOST_BGL_ONE_PARAM_CREF(isomorphism_map, vertex_isomorphism) \ |
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| 1437 | :info:build ^ |
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| 1438 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1439 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1440 | :info:build ^ |
|---|
| 1441 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1442 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1443 | :info:build ^ |
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| 1444 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1445 | :info:build <scratch space>:84:1: note: expanded from macro '_' |
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| 1446 | :info:build _isomorphism_map |
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| 1447 | :info:build ^ |
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| 1448 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1449 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1450 | :info:build ^ |
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| 1451 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1452 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1453 | :info:build ^ |
|---|
| 1454 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1455 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1456 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_invariant' [-Wunused-variable] |
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| 1457 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1458 | :info:build ^ |
|---|
| 1459 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:94:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1460 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_invariant, vertex_invariant) \ |
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| 1461 | :info:build ^ |
|---|
| 1462 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1463 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1464 | :info:build ^ |
|---|
| 1465 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1466 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1467 | :info:build ^ |
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| 1468 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1469 | :info:build <scratch space>:88:1: note: expanded from macro '_' |
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| 1470 | :info:build _vertex_invariant |
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| 1471 | :info:build ^ |
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| 1472 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1473 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1474 | :info:build ^ |
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| 1475 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1476 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1477 | :info:build ^ |
|---|
| 1478 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1479 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1480 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_invariant1' [-Wunused-variable] |
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| 1481 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1482 | :info:build ^ |
|---|
| 1483 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:95:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1484 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_invariant1, vertex_invariant1) \ |
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| 1485 | :info:build ^ |
|---|
| 1486 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1487 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1488 | :info:build ^ |
|---|
| 1489 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1490 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1491 | :info:build ^ |
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| 1492 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1493 | :info:build <scratch space>:92:1: note: expanded from macro '_' |
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| 1494 | :info:build _vertex_invariant1 |
|---|
| 1495 | :info:build ^ |
|---|
| 1496 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1497 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1498 | :info:build ^ |
|---|
| 1499 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1500 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1501 | :info:build ^ |
|---|
| 1502 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1503 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1504 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_invariant2' [-Wunused-variable] |
|---|
| 1505 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1506 | :info:build ^ |
|---|
| 1507 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:96:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1508 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_invariant2, vertex_invariant2) \ |
|---|
| 1509 | :info:build ^ |
|---|
| 1510 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1511 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1512 | :info:build ^ |
|---|
| 1513 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1514 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1515 | :info:build ^ |
|---|
| 1516 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1517 | :info:build <scratch space>:96:1: note: expanded from macro '_' |
|---|
| 1518 | :info:build _vertex_invariant2 |
|---|
| 1519 | :info:build ^ |
|---|
| 1520 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1521 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1522 | :info:build ^ |
|---|
| 1523 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1524 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1525 | :info:build ^ |
|---|
| 1526 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1527 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1528 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertex_max_invariant' [-Wunused-variable] |
|---|
| 1529 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1530 | :info:build ^ |
|---|
| 1531 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:97:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1532 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertex_max_invariant, vertex_max_invariant) \ |
|---|
| 1533 | :info:build ^ |
|---|
| 1534 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1535 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1536 | :info:build ^ |
|---|
| 1537 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1538 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1539 | :info:build ^ |
|---|
| 1540 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1541 | :info:build <scratch space>:100:1: note: expanded from macro '_' |
|---|
| 1542 | :info:build _vertex_max_invariant |
|---|
| 1543 | :info:build ^ |
|---|
| 1544 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1545 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1546 | :info:build ^ |
|---|
| 1547 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1548 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1549 | :info:build ^ |
|---|
| 1550 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1551 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1552 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_polling' [-Wunused-variable] |
|---|
| 1553 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1554 | :info:build ^ |
|---|
| 1555 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:98:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1556 | :info:build BOOST_BGL_ONE_PARAM_CREF(polling, polling) \ |
|---|
| 1557 | :info:build ^ |
|---|
| 1558 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1559 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1560 | :info:build ^ |
|---|
| 1561 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1562 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1563 | :info:build ^ |
|---|
| 1564 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1565 | :info:build <scratch space>:104:1: note: expanded from macro '_' |
|---|
| 1566 | :info:build _polling |
|---|
| 1567 | :info:build ^ |
|---|
| 1568 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1569 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1570 | :info:build ^ |
|---|
| 1571 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1572 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1573 | :info:build ^ |
|---|
| 1574 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1575 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1576 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_lookahead' [-Wunused-variable] |
|---|
| 1577 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1578 | :info:build ^ |
|---|
| 1579 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:99:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1580 | :info:build BOOST_BGL_ONE_PARAM_CREF(lookahead, lookahead) \ |
|---|
| 1581 | :info:build ^ |
|---|
| 1582 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1583 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1584 | :info:build ^ |
|---|
| 1585 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1586 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1587 | :info:build ^ |
|---|
| 1588 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1589 | :info:build <scratch space>:108:1: note: expanded from macro '_' |
|---|
| 1590 | :info:build _lookahead |
|---|
| 1591 | :info:build ^ |
|---|
| 1592 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1593 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1594 | :info:build ^ |
|---|
| 1595 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1596 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1597 | :info:build ^ |
|---|
| 1598 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1599 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1600 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_in_parallel' [-Wunused-variable] |
|---|
| 1601 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1602 | :info:build ^ |
|---|
| 1603 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:100:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1604 | :info:build BOOST_BGL_ONE_PARAM_CREF(in_parallel, in_parallel) \ |
|---|
| 1605 | :info:build ^ |
|---|
| 1606 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1607 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1608 | :info:build ^ |
|---|
| 1609 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1610 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1611 | :info:build ^ |
|---|
| 1612 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1613 | :info:build <scratch space>:112:1: note: expanded from macro '_' |
|---|
| 1614 | :info:build _in_parallel |
|---|
| 1615 | :info:build ^ |
|---|
| 1616 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1617 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1618 | :info:build ^ |
|---|
| 1619 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1620 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1621 | :info:build ^ |
|---|
| 1622 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1623 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1624 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_displacement_map' [-Wunused-variable] |
|---|
| 1625 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1626 | :info:build ^ |
|---|
| 1627 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:101:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1628 | :info:build BOOST_BGL_ONE_PARAM_CREF(displacement_map, vertex_displacement) \ |
|---|
| 1629 | :info:build ^ |
|---|
| 1630 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1631 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1632 | :info:build ^ |
|---|
| 1633 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1634 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1635 | :info:build ^ |
|---|
| 1636 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1637 | :info:build <scratch space>:116:1: note: expanded from macro '_' |
|---|
| 1638 | :info:build _displacement_map |
|---|
| 1639 | :info:build ^ |
|---|
| 1640 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1641 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1642 | :info:build ^ |
|---|
| 1643 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1644 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1645 | :info:build ^ |
|---|
| 1646 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1647 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1648 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_attractive_force' [-Wunused-variable] |
|---|
| 1649 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1650 | :info:build ^ |
|---|
| 1651 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:102:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1652 | :info:build BOOST_BGL_ONE_PARAM_CREF(attractive_force, attractive_force) \ |
|---|
| 1653 | :info:build ^ |
|---|
| 1654 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1655 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1656 | :info:build ^ |
|---|
| 1657 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1658 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1659 | :info:build ^ |
|---|
| 1660 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1661 | :info:build <scratch space>:120:1: note: expanded from macro '_' |
|---|
| 1662 | :info:build _attractive_force |
|---|
| 1663 | :info:build ^ |
|---|
| 1664 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1665 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1666 | :info:build ^ |
|---|
| 1667 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1668 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1669 | :info:build ^ |
|---|
| 1670 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1671 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1672 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_repulsive_force' [-Wunused-variable] |
|---|
| 1673 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1674 | :info:build ^ |
|---|
| 1675 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:103:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1676 | :info:build BOOST_BGL_ONE_PARAM_CREF(repulsive_force, repulsive_force) \ |
|---|
| 1677 | :info:build ^ |
|---|
| 1678 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1679 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
|---|
| 1680 | :info:build ^ |
|---|
| 1681 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
|---|
| 1682 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
|---|
| 1683 | :info:build ^ |
|---|
| 1684 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
|---|
| 1685 | :info:build <scratch space>:124:1: note: expanded from macro '_' |
|---|
| 1686 | :info:build _repulsive_force |
|---|
| 1687 | :info:build ^ |
|---|
| 1688 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1689 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
|---|
| 1690 | :info:build ^ |
|---|
| 1691 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
|---|
| 1692 | :info:build ::boost::parameter::keyword<tag> const& name \ |
|---|
| 1693 | :info:build ^ |
|---|
| 1694 | :info:build In file included from scaffold_graph.cpp:14: |
|---|
| 1695 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
|---|
| 1696 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_force_pairs' [-Wunused-variable] |
|---|
| 1697 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
|---|
| 1698 | :info:build ^ |
|---|
| 1699 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:104:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1700 | :info:build BOOST_BGL_ONE_PARAM_CREF(force_pairs, force_pairs) \ |
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| 1701 | :info:build ^ |
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| 1702 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1703 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1704 | :info:build ^ |
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| 1705 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1706 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1707 | :info:build ^ |
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| 1708 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1709 | :info:build <scratch space>:128:1: note: expanded from macro '_' |
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| 1710 | :info:build _force_pairs |
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| 1711 | :info:build ^ |
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| 1712 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1713 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1714 | :info:build ^ |
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| 1715 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1716 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1717 | :info:build ^ |
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| 1718 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1719 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1720 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_cooling' [-Wunused-variable] |
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| 1721 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1722 | :info:build ^ |
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| 1723 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:105:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1724 | :info:build BOOST_BGL_ONE_PARAM_CREF(cooling, cooling) \ |
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| 1725 | :info:build ^ |
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| 1726 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1727 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1728 | :info:build ^ |
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| 1729 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1730 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1731 | :info:build ^ |
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| 1732 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1733 | :info:build <scratch space>:132:1: note: expanded from macro '_' |
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| 1734 | :info:build _cooling |
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| 1735 | :info:build ^ |
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| 1736 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1737 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1738 | :info:build ^ |
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| 1739 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1740 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1741 | :info:build ^ |
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| 1742 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1743 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1744 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_iterations' [-Wunused-variable] |
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| 1745 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1746 | :info:build ^ |
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| 1747 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:106:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1748 | :info:build BOOST_BGL_ONE_PARAM_CREF(iterations, iterations) \ |
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| 1749 | :info:build ^ |
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| 1750 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1751 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1752 | :info:build ^ |
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| 1753 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1754 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1755 | :info:build ^ |
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| 1756 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1757 | :info:build <scratch space>:136:1: note: expanded from macro '_' |
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| 1758 | :info:build _iterations |
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| 1759 | :info:build ^ |
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| 1760 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1761 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1762 | :info:build ^ |
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| 1763 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1764 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1765 | :info:build ^ |
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| 1766 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1767 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1768 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_diameter_range' [-Wunused-variable] |
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| 1769 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1770 | :info:build ^ |
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| 1771 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:107:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1772 | :info:build BOOST_BGL_ONE_PARAM_CREF(diameter_range, diameter_range) \ |
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| 1773 | :info:build ^ |
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| 1774 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1775 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1776 | :info:build ^ |
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| 1777 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1778 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1779 | :info:build ^ |
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| 1780 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1781 | :info:build <scratch space>:140:1: note: expanded from macro '_' |
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| 1782 | :info:build _diameter_range |
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| 1783 | :info:build ^ |
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| 1784 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1785 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1786 | :info:build ^ |
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| 1787 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1788 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1789 | :info:build ^ |
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| 1790 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1791 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1792 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_learning_constant_range' [-Wunused-variable] |
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| 1793 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1794 | :info:build ^ |
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| 1795 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:108:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1796 | :info:build BOOST_BGL_ONE_PARAM_CREF(learning_constant_range, learning_constant_range) \ |
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| 1797 | :info:build ^ |
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| 1798 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
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| 1799 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1800 | :info:build ^ |
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| 1801 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1802 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1803 | :info:build ^ |
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| 1804 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1805 | :info:build <scratch space>:144:1: note: expanded from macro '_' |
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| 1806 | :info:build _learning_constant_range |
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| 1807 | :info:build ^ |
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| 1808 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1809 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1810 | :info:build ^ |
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| 1811 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1812 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1813 | :info:build ^ |
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| 1814 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1815 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1816 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_vertices_equivalent' [-Wunused-variable] |
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| 1817 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1818 | :info:build ^ |
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| 1819 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:109:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
|---|
| 1820 | :info:build BOOST_BGL_ONE_PARAM_CREF(vertices_equivalent, vertices_equivalent) \ |
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| 1821 | :info:build ^ |
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| 1822 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1823 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1824 | :info:build ^ |
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| 1825 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1826 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1827 | :info:build ^ |
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| 1828 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1829 | :info:build <scratch space>:148:1: note: expanded from macro '_' |
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| 1830 | :info:build _vertices_equivalent |
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| 1831 | :info:build ^ |
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| 1832 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
|---|
| 1833 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1834 | :info:build ^ |
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| 1835 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1836 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1837 | :info:build ^ |
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| 1838 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1839 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1840 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_edges_equivalent' [-Wunused-variable] |
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| 1841 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1842 | :info:build ^ |
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| 1843 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:110:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1844 | :info:build BOOST_BGL_ONE_PARAM_CREF(edges_equivalent, edges_equivalent) \ |
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| 1845 | :info:build ^ |
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| 1846 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1847 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1848 | :info:build ^ |
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| 1849 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1850 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1851 | :info:build ^ |
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| 1852 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1853 | :info:build <scratch space>:152:1: note: expanded from macro '_' |
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| 1854 | :info:build _edges_equivalent |
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| 1855 | :info:build ^ |
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| 1856 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1857 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1858 | :info:build ^ |
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| 1859 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1860 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1861 | :info:build ^ |
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| 1862 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1863 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1864 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_index_in_heap_map' [-Wunused-variable] |
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| 1865 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1866 | :info:build ^ |
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| 1867 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:111:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1868 | :info:build BOOST_BGL_ONE_PARAM_CREF(index_in_heap_map, index_in_heap_map) \ |
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| 1869 | :info:build ^ |
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| 1870 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:334:45: note: expanded from macro 'BOOST_BGL_ONE_PARAM_CREF' |
|---|
| 1871 | :info:build #define BOOST_BGL_ONE_PARAM_CREF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1872 | :info:build ^ |
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| 1873 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1874 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1875 | :info:build ^ |
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| 1876 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1877 | :info:build <scratch space>:156:1: note: expanded from macro '_' |
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| 1878 | :info:build _index_in_heap_map |
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| 1879 | :info:build ^ |
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| 1880 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1881 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1882 | :info:build ^ |
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| 1883 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1884 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1885 | :info:build ^ |
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| 1886 | :info:build In file included from scaffold_graph.cpp:14: |
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| 1887 | :info:build In file included from /opt/local/include/boost/graph/depth_first_search.hpp:21: |
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| 1888 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:335:7: warning: unused variable '_max_priority_queue' [-Wunused-variable] |
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| 1889 | :info:build BOOST_BGL_DECLARE_NAMED_PARAMS |
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| 1890 | :info:build ^ |
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| 1891 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:112:5: note: expanded from macro 'BOOST_BGL_DECLARE_NAMED_PARAMS' |
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| 1892 | :info:build BOOST_BGL_ONE_PARAM_REF(max_priority_queue, max_priority_queue) |
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| 1893 | :info:build ^ |
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| 1894 | :info:build /opt/local/include/boost/graph/named_function_params.hpp:333:44: note: expanded from macro 'BOOST_BGL_ONE_PARAM_REF' |
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| 1895 | :info:build #define BOOST_BGL_ONE_PARAM_REF(name, key) BOOST_PARAMETER_NAME(name) |
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| 1896 | :info:build ^ |
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| 1897 | :info:build /opt/local/include/boost/parameter/name.hpp:139:9: note: expanded from macro 'BOOST_PARAMETER_NAME' |
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| 1898 | :info:build , BOOST_PARAMETER_SIMPLE_NAME \ |
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| 1899 | :info:build ^ |
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| 1900 | :info:build note: (skipping 6 expansions in backtrace; use -fmacro-backtrace-limit=0 to see all) |
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| 1901 | :info:build <scratch space>:160:1: note: expanded from macro '_' |
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| 1902 | :info:build _max_priority_queue |
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| 1903 | :info:build ^ |
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| 1904 | :info:build /opt/local/include/boost/parameter/name.hpp:110:53: note: expanded from macro 'BOOST_PARAMETER_BASIC_NAME' |
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| 1905 | :info:build BOOST_PARAMETER_NAME_OBJECT(tag_namespace::tag, name) |
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| 1906 | :info:build ^ |
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| 1907 | :info:build /opt/local/include/boost/parameter/name.hpp:86:48: note: expanded from macro 'BOOST_PARAMETER_NAME_OBJECT' |
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| 1908 | :info:build ::boost::parameter::keyword<tag> const& name \ |
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| 1909 | :info:build ^ |
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| 1910 | :info:build 2 warnings and 3 errors generated. |
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| 1911 | :info:build make[2]: *** [gtf_to_sam.o] Error 1 |
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| 1912 | :info:build In file included from bundles.cpp:16: |
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| 1913 | :info:build In file included from ./bundles.h:21: |
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| 1914 | :info:build In file included from ./gtf_tracking.h:12: |
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| 1915 | :info:build In file included from ./gff.h:7: |
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| 1916 | :info:build In file included from ./GFaSeqGet.h:4: |
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| 1917 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
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| 1918 | :info:build idxInsert(result, *item); |
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| 1919 | :info:build ^ |
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| 1920 | :info:build this-> |
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| 1921 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
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| 1922 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
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| 1923 | :info:build ^ |
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| 1924 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
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| 1925 | :info:build uexons.Add(seg); |
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| 1926 | :info:build ^ |
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| 1927 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
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| 1928 | :info:build void idxInsert(int idx, OBJ& item); |
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| 1929 | :info:build ^ |
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| 1930 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
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| 1931 | :info:build setCapacity(this->fCapacity+list.fCount); |
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| 1932 | :info:build ^ |
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| 1933 | :info:build this-> |
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| 1934 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
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| 1935 | :info:build qmrnas.Add(loc.mrnas); |
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| 1936 | :info:build ^ |
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| 1937 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
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| 1938 | :info:build void setCapacity(int NewCapacity); |
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| 1939 | :info:build ^ |
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| 1940 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
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| 1941 | :info:build setCapacity(this->fCapacity+list.fCount); |
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| 1942 | :info:build ^ |
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| 1943 | :info:build this-> |
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| 1944 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
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| 1945 | :info:build qmexons.Add(loc.mexons); |
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| 1946 | :info:build ^ |
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| 1947 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
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| 1948 | :info:build void setCapacity(int NewCapacity); |
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| 1949 | :info:build ^ |
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| 1950 | :info:build In file included from differential.cpp:15: |
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| 1951 | :info:build ./differential.h:176:50: warning: unused variable 's2' [-Wunused-variable] |
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| 1952 | :info:build const vector<shared_ptr<Scaffold> >& s2 = bundles[i-1]->ref_scaffolds(); |
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| 1953 | :info:build ^ |
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| 1954 | :info:build assemble.cpp:188:21: warning: unused variable 'a_for_b' [-Wunused-variable] |
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| 1955 | :info:build ReachGraph::ANode a_for_b = b_to_a[b_id]; |
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| 1956 | :info:build ^ |
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| 1957 | :info:build assemble.cpp:123:17: warning: unused variable 'hits_for_node' [-Wunused-variable] |
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| 1958 | :info:build HitsForNodeMap hits_for_node = get(vertex_name, dag); |
|---|
| 1959 | :info:build ^ |
|---|
| 1960 | :info:build assemble.cpp:262:21: warning: unused variable 'a_for_b' [-Wunused-variable] |
|---|
| 1961 | :info:build ReachGraph::ANode a_for_b = bp.nodeFromANodeId(a_id_for_b); |
|---|
| 1962 | :info:build ^ |
|---|
| 1963 | :info:build In file included from graph_optimize.cpp:13: |
|---|
| 1964 | :info:build In file included from ./graph_optimize.h:18: |
|---|
| 1965 | :info:build In file included from ./scaffold_graph.h:14: |
|---|
| 1966 | :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp:45: |
|---|
| 1967 | :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17: |
|---|
| 1968 | :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254:10: error: no member named 'BOOST_FOREACH' in namespace 'boost' |
|---|
| 1969 | :info:build boost::foreach::tag) |
|---|
| 1970 | :info:build ~~~~~~~^ |
|---|
| 1971 | :info:build ./common.h:26:25: note: expanded from macro 'foreach' |
|---|
| 1972 | :info:build #define foreach BOOST_FOREACH |
|---|
| 1973 | :info:build ^ |
|---|
| 1974 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 1975 | :info:build idxInsert(result, *item); |
|---|
| 1976 | :info:build ^ |
|---|
| 1977 | :info:build this-> |
|---|
| 1978 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 1979 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 1980 | :info:build ^ |
|---|
| 1981 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 1982 | :info:build uexons.Add(seg); |
|---|
| 1983 | :info:build ^ |
|---|
| 1984 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 1985 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 1986 | :info:build ^ |
|---|
| 1987 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 1988 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 1989 | :info:build ^ |
|---|
| 1990 | :info:build this-> |
|---|
| 1991 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 1992 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 1993 | :info:build ^ |
|---|
| 1994 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 1995 | :info:build void setCapacity(int NewCapacity); |
|---|
| 1996 | :info:build ^ |
|---|
| 1997 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 1998 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 1999 | :info:build ^ |
|---|
| 2000 | :info:build this-> |
|---|
| 2001 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2002 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2003 | :info:build ^ |
|---|
| 2004 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2005 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2006 | :info:build ^ |
|---|
| 2007 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2008 | :info:build idxInsert(result, *item); |
|---|
| 2009 | :info:build ^ |
|---|
| 2010 | :info:build this-> |
|---|
| 2011 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2012 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2013 | :info:build ^ |
|---|
| 2014 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2015 | :info:build uexons.Add(seg); |
|---|
| 2016 | :info:build ^ |
|---|
| 2017 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2018 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2019 | :info:build ^ |
|---|
| 2020 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2021 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2022 | :info:build ^ |
|---|
| 2023 | :info:build this-> |
|---|
| 2024 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2025 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2026 | :info:build ^ |
|---|
| 2027 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2028 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2029 | :info:build ^ |
|---|
| 2030 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2031 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2032 | :info:build ^ |
|---|
| 2033 | :info:build this-> |
|---|
| 2034 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2035 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2036 | :info:build ^ |
|---|
| 2037 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2038 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2039 | :info:build ^ |
|---|
| 2040 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2041 | :info:build idxInsert(result, *item); |
|---|
| 2042 | :info:build ^ |
|---|
| 2043 | :info:build this-> |
|---|
| 2044 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2045 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2046 | :info:build ^ |
|---|
| 2047 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2048 | :info:build uexons.Add(seg); |
|---|
| 2049 | :info:build ^ |
|---|
| 2050 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2051 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2052 | :info:build ^ |
|---|
| 2053 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2054 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2055 | :info:build ^ |
|---|
| 2056 | :info:build this-> |
|---|
| 2057 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2058 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2059 | :info:build ^ |
|---|
| 2060 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2061 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2062 | :info:build ^ |
|---|
| 2063 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2064 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2065 | :info:build ^ |
|---|
| 2066 | :info:build this-> |
|---|
| 2067 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2068 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2069 | :info:build ^ |
|---|
| 2070 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2071 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2072 | :info:build ^ |
|---|
| 2073 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2074 | :info:build idxInsert(result, *item); |
|---|
| 2075 | :info:build ^ |
|---|
| 2076 | :info:build this-> |
|---|
| 2077 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2078 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2079 | :info:build ^ |
|---|
| 2080 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2081 | :info:build uexons.Add(seg); |
|---|
| 2082 | :info:build ^ |
|---|
| 2083 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2084 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2085 | :info:build ^ |
|---|
| 2086 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2087 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2088 | :info:build ^ |
|---|
| 2089 | :info:build this-> |
|---|
| 2090 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2091 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2092 | :info:build ^ |
|---|
| 2093 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2094 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2095 | :info:build ^ |
|---|
| 2096 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2097 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2098 | :info:build ^ |
|---|
| 2099 | :info:build this-> |
|---|
| 2100 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2101 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2102 | :info:build ^ |
|---|
| 2103 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2104 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2105 | :info:build ^ |
|---|
| 2106 | :info:build 3 warnings and 3 errors generated. |
|---|
| 2107 | :info:build In file included from cuffdiff.cpp:33: |
|---|
| 2108 | :info:build In file included from /opt/local/include/boost/graph/adjacency_list.hpp:45: |
|---|
| 2109 | :info:build In file included from /opt/local/include/boost/graph/named_graph.hpp:17: |
|---|
| 2110 | :info:build /opt/local/include/boost/multi_index/hashed_index.hpp:1254:10: error: no member named 'BOOST_FOREACH' in namespace 'boost' |
|---|
| 2111 | :info:build boost::foreach::tag) |
|---|
| 2112 | :info:build ~~~~~~~^ |
|---|
| 2113 | :info:build ./common.h:26:25: note: expanded from macro 'foreach' |
|---|
| 2114 | :info:build #define foreach BOOST_FOREACH |
|---|
| 2115 | :info:build ^ |
|---|
| 2116 | :info:build make[2]: *** [bundles.o] Error 1 |
|---|
| 2117 | :info:build 2 warnings and 3 errors generated. |
|---|
| 2118 | :info:build make[2]: *** [filters.o] Error 1 |
|---|
| 2119 | :info:build 2 warnings and 3 errors generated. |
|---|
| 2120 | :info:build 2 warnings and 3 errors generated. |
|---|
| 2121 | :info:build 2 warnings and 3 errors generated. |
|---|
| 2122 | :info:build make[2]: *** [biascorrection.o] Error 1 |
|---|
| 2123 | :info:build make[2]: *** [clustering.o] Error 1 |
|---|
| 2124 | :info:build make[2]: *** [abundances.o] Error 1 |
|---|
| 2125 | :info:build In file included from cufflinks.cpp:25: |
|---|
| 2126 | :info:build In file included from ./clustering.h:38: |
|---|
| 2127 | :info:build In file included from ./abundances.h:21: |
|---|
| 2128 | :info:build ./scaffolds.h:247:34: warning: unused variable 'op' [-Wunused-variable] |
|---|
| 2129 | :info:build foreach(AugmentedCuffOp& op, aug_ops) |
|---|
| 2130 | :info:build ^ |
|---|
| 2131 | :info:build /opt/local/include/boost/foreach.hpp:1108:14: note: expanded from macro 'BOOST_FOREACH' |
|---|
| 2132 | :info:build for (VAR = BOOST_FOREACH_DEREF(COL); !BOOST_FOREACH_ID(_foreach_continue); BOOST_FOREACH_ID(_foreach_continue) = true) |
|---|
| 2133 | :info:build ^ |
|---|
| 2134 | :info:build differential.cpp:632:8: warning: unused variable 'multi_transcript_locus' [-Wunused-variable] |
|---|
| 2135 | :info:build bool multi_transcript_locus = samples[i]->transcripts.abundances().size() > 1; |
|---|
| 2136 | :info:build ^ |
|---|
| 2137 | :info:build In file included from cufflinks.cpp:25: |
|---|
| 2138 | :info:build In file included from ./clustering.h:38: |
|---|
| 2139 | :info:build In file included from ./abundances.h:22: |
|---|
| 2140 | :info:build In file included from ./bundles.h:21: |
|---|
| 2141 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 2142 | :info:build In file included from ./gff.h:7: |
|---|
| 2143 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 2144 | :info:build ./GList.hh:972:6: warning: unused variable 'result' [-Wunused-variable] |
|---|
| 2145 | :info:build int result=-1; |
|---|
| 2146 | :info:build ^ |
|---|
| 2147 | :info:build 1 warning generated. |
|---|
| 2148 | :info:build In file included from cuffdiff.cpp:42: |
|---|
| 2149 | :info:build ./differential.h:176:50: warning: unused variable 's2' [-Wunused-variable] |
|---|
| 2150 | :info:build const vector<shared_ptr<Scaffold> >& s2 = bundles[i-1]->ref_scaffolds(); |
|---|
| 2151 | :info:build ^ |
|---|
| 2152 | :info:build cuffdiff.cpp:805:35: warning: unused variable 's2' [-Wunused-variable] |
|---|
| 2153 | :info:build const AbundanceGroup& s2 = prev.transcripts; |
|---|
| 2154 | :info:build ^ |
|---|
| 2155 | :info:build In file included from assemble.cpp:48: |
|---|
| 2156 | :info:build In file included from ./assemble.h:26: |
|---|
| 2157 | :info:build In file included from ./bundles.h:21: |
|---|
| 2158 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 2159 | :info:build In file included from ./gff.h:7: |
|---|
| 2160 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 2161 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2162 | :info:build idxInsert(result, *item); |
|---|
| 2163 | :info:build ^ |
|---|
| 2164 | :info:build this-> |
|---|
| 2165 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2166 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2167 | :info:build ^ |
|---|
| 2168 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2169 | :info:build uexons.Add(seg); |
|---|
| 2170 | :info:build ^ |
|---|
| 2171 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2172 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2173 | :info:build ^ |
|---|
| 2174 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2175 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2176 | :info:build ^ |
|---|
| 2177 | :info:build this-> |
|---|
| 2178 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2179 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2180 | :info:build ^ |
|---|
| 2181 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2182 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2183 | :info:build ^ |
|---|
| 2184 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2185 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2186 | :info:build ^ |
|---|
| 2187 | :info:build this-> |
|---|
| 2188 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2189 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2190 | :info:build ^ |
|---|
| 2191 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2192 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2193 | :info:build ^ |
|---|
| 2194 | :info:build In file included from differential.cpp:14: |
|---|
| 2195 | :info:build In file included from ./abundances.h:22: |
|---|
| 2196 | :info:build In file included from ./bundles.h:21: |
|---|
| 2197 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 2198 | :info:build In file included from ./gff.h:7: |
|---|
| 2199 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 2200 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2201 | :info:build idxInsert(result, *item); |
|---|
| 2202 | :info:build ^ |
|---|
| 2203 | :info:build this-> |
|---|
| 2204 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2205 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2206 | :info:build ^ |
|---|
| 2207 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2208 | :info:build uexons.Add(seg); |
|---|
| 2209 | :info:build ^ |
|---|
| 2210 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2211 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2212 | :info:build ^ |
|---|
| 2213 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2214 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2215 | :info:build ^ |
|---|
| 2216 | :info:build this-> |
|---|
| 2217 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2218 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2219 | :info:build ^ |
|---|
| 2220 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2221 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2222 | :info:build ^ |
|---|
| 2223 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2224 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2225 | :info:build ^ |
|---|
| 2226 | :info:build this-> |
|---|
| 2227 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2228 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2229 | :info:build ^ |
|---|
| 2230 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2231 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2232 | :info:build ^ |
|---|
| 2233 | :info:build In file included from assemble.cpp:19: |
|---|
| 2234 | :info:build In file included from ./lemon/topology.h:22: |
|---|
| 2235 | :info:build In file included from ./lemon/dfs.h:26: |
|---|
| 2236 | :info:build In file included from ./lemon/list_graph.h:26: |
|---|
| 2237 | :info:build ./lemon/bits/base_extender.h:362:11: error: use of undeclared identifier 'aNode' |
|---|
| 2238 | :info:build return aNode(edge); |
|---|
| 2239 | :info:build ^ |
|---|
| 2240 | :info:build this-> |
|---|
| 2241 | :info:build assemble.cpp:258:28: note: in instantiation of member function 'lemon::BidirBpUGraphExtender<lemon::SmartBpUGraphBase>::source' requested here |
|---|
| 2242 | :info:build ReachGraph::ANode a = bp.source(i); |
|---|
| 2243 | :info:build ^ |
|---|
| 2244 | :info:build ./lemon/smart_graph.h:912:8: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2245 | :info:build Node aNode(const UEdge& edge) const { |
|---|
| 2246 | :info:build ^ |
|---|
| 2247 | :info:build ./lemon/smart_graph.h:919:15: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2248 | :info:build static bool aNode(const Node& node) { |
|---|
| 2249 | :info:build ^ |
|---|
| 2250 | :info:build In file included from assemble.cpp:19: |
|---|
| 2251 | :info:build In file included from ./lemon/topology.h:22: |
|---|
| 2252 | :info:build In file included from ./lemon/dfs.h:26: |
|---|
| 2253 | :info:build In file included from ./lemon/list_graph.h:26: |
|---|
| 2254 | :info:build ./lemon/bits/base_extender.h:365:11: error: use of undeclared identifier 'bNode' |
|---|
| 2255 | :info:build return bNode(edge); |
|---|
| 2256 | :info:build ^ |
|---|
| 2257 | :info:build this-> |
|---|
| 2258 | :info:build assemble.cpp:259:28: note: in instantiation of member function 'lemon::BidirBpUGraphExtender<lemon::SmartBpUGraphBase>::target' requested here |
|---|
| 2259 | :info:build ReachGraph::BNode b = bp.target(i); |
|---|
| 2260 | :info:build ^ |
|---|
| 2261 | :info:build ./lemon/smart_graph.h:915:8: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2262 | :info:build Node bNode(const UEdge& edge) const { |
|---|
| 2263 | :info:build ^ |
|---|
| 2264 | :info:build ./lemon/smart_graph.h:923:15: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2265 | :info:build static bool bNode(const Node& node) { |
|---|
| 2266 | :info:build ^ |
|---|
| 2267 | :info:build In file included from cuffdiff.cpp:27: |
|---|
| 2268 | :info:build In file included from ./bundles.h:21: |
|---|
| 2269 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 2270 | :info:build In file included from ./gff.h:7: |
|---|
| 2271 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 2272 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2273 | :info:build idxInsert(result, *item); |
|---|
| 2274 | :info:build ^ |
|---|
| 2275 | :info:build this-> |
|---|
| 2276 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2277 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2278 | :info:build ^ |
|---|
| 2279 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2280 | :info:build uexons.Add(seg); |
|---|
| 2281 | :info:build ^ |
|---|
| 2282 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2283 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2284 | :info:build ^ |
|---|
| 2285 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2286 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2287 | :info:build ^ |
|---|
| 2288 | :info:build this-> |
|---|
| 2289 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2290 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2291 | :info:build ^ |
|---|
| 2292 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2293 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2294 | :info:build ^ |
|---|
| 2295 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2296 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2297 | :info:build ^ |
|---|
| 2298 | :info:build this-> |
|---|
| 2299 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2300 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2301 | :info:build ^ |
|---|
| 2302 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2303 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2304 | :info:build ^ |
|---|
| 2305 | :info:build 3 warnings generated. |
|---|
| 2306 | :info:build graph_optimize.cpp:281:30: warning: unused variable 'e' [-Wunused-variable] |
|---|
| 2307 | :info:build ContainmentGraph::UEdge e = containment.addEdge(nj.first, |
|---|
| 2308 | :info:build ^ |
|---|
| 2309 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2310 | :info:build idxInsert(result, *item); |
|---|
| 2311 | :info:build ^ |
|---|
| 2312 | :info:build this-> |
|---|
| 2313 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2314 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2315 | :info:build ^ |
|---|
| 2316 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2317 | :info:build uexons.Add(seg); |
|---|
| 2318 | :info:build ^ |
|---|
| 2319 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2320 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2321 | :info:build ^ |
|---|
| 2322 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2323 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2324 | :info:build ^ |
|---|
| 2325 | :info:build this-> |
|---|
| 2326 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2327 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2328 | :info:build ^ |
|---|
| 2329 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2330 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2331 | :info:build ^ |
|---|
| 2332 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2333 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2334 | :info:build ^ |
|---|
| 2335 | :info:build this-> |
|---|
| 2336 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2337 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2338 | :info:build ^ |
|---|
| 2339 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2340 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2341 | :info:build ^ |
|---|
| 2342 | :info:build 4 warnings and 4 errors generated. |
|---|
| 2343 | :info:build make[2]: *** [differential.o] Error 1 |
|---|
| 2344 | :info:build 5 warnings and 5 errors generated. |
|---|
| 2345 | :info:build 4 warnings and 4 errors generated. |
|---|
| 2346 | :info:build make[2]: *** [assemble.o] Error 1 |
|---|
| 2347 | :info:build In file included from graph_optimize.cpp:13: |
|---|
| 2348 | :info:build In file included from ./graph_optimize.h:17: |
|---|
| 2349 | :info:build In file included from ./bundles.h:21: |
|---|
| 2350 | :info:build In file included from ./gtf_tracking.h:12: |
|---|
| 2351 | :info:build In file included from ./gff.h:7: |
|---|
| 2352 | :info:build In file included from ./GFaSeqGet.h:4: |
|---|
| 2353 | :info:build ./GList.hh:507:4: error: use of undeclared identifier 'idxInsert' |
|---|
| 2354 | :info:build idxInsert(result, *item); |
|---|
| 2355 | :info:build ^ |
|---|
| 2356 | :info:build this-> |
|---|
| 2357 | :info:build ./GList.hh:107:33: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2358 | :info:build int Add(OBJ& item) { return Add(&item); } //both will CREATE a new OBJ and COPY to it |
|---|
| 2359 | :info:build ^ |
|---|
| 2360 | :info:build ./gtf_tracking.h:314:12: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2361 | :info:build uexons.Add(seg); |
|---|
| 2362 | :info:build ^ |
|---|
| 2363 | :info:build ./GList.hh:52:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2364 | :info:build void idxInsert(int idx, OBJ& item); |
|---|
| 2365 | :info:build ^ |
|---|
| 2366 | :info:build make[2]: *** [cuffdiff.o] Error 1 |
|---|
| 2367 | :info:build ./GList.hh:772:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2368 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2369 | :info:build ^ |
|---|
| 2370 | :info:build this-> |
|---|
| 2371 | :info:build ./gtf_tracking.h:650:10: note: in instantiation of member function 'GList<GffObj>::Add' requested here |
|---|
| 2372 | :info:build qmrnas.Add(loc.mrnas); |
|---|
| 2373 | :info:build ^ |
|---|
| 2374 | :info:build ./GList.hh:171:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2375 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2376 | :info:build ^ |
|---|
| 2377 | :info:build ./GList.hh:537:5: error: use of undeclared identifier 'setCapacity' |
|---|
| 2378 | :info:build setCapacity(this->fCapacity+list.fCount); |
|---|
| 2379 | :info:build ^ |
|---|
| 2380 | :info:build this-> |
|---|
| 2381 | :info:build ./gtf_tracking.h:653:11: note: in instantiation of member function 'GArray<GSeg>::Add' requested here |
|---|
| 2382 | :info:build qmexons.Add(loc.mexons); |
|---|
| 2383 | :info:build ^ |
|---|
| 2384 | :info:build ./GList.hh:76:10: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2385 | :info:build void setCapacity(int NewCapacity); |
|---|
| 2386 | :info:build ^ |
|---|
| 2387 | :info:build 48 warnings generated. |
|---|
| 2388 | :info:build 2 warnings and 4 errors generated. |
|---|
| 2389 | :info:build make[2]: *** [cufflinks.o] Error 1 |
|---|
| 2390 | :info:build In file included from graph_optimize.cpp:16: |
|---|
| 2391 | :info:build In file included from ./lemon/topology.h:22: |
|---|
| 2392 | :info:build In file included from ./lemon/dfs.h:26: |
|---|
| 2393 | :info:build In file included from ./lemon/list_graph.h:26: |
|---|
| 2394 | :info:build ./lemon/bits/base_extender.h:362:11: error: use of undeclared identifier 'aNode' |
|---|
| 2395 | :info:build return aNode(edge); |
|---|
| 2396 | :info:build ^ |
|---|
| 2397 | :info:build this-> |
|---|
| 2398 | :info:build ./matching_merge.h:68:41: note: in instantiation of member function 'lemon::BidirBpUGraphExtender<lemon::SmartBpUGraphBase>::source' requested here |
|---|
| 2399 | :info:build ReachGraph::ANode a_match_to_b = bp.source(matched_b_nodes[b]); |
|---|
| 2400 | :info:build ^ |
|---|
| 2401 | :info:build ./matching_merge.h:87:5: note: in instantiation of function template specialization 'make_chains_from_matching<lemon::MaxBipartiteMatching<lemon::SmartBpUGraph> >' requested here |
|---|
| 2402 | :info:build make_chains_from_matching(bp_graph, matcher, chains); |
|---|
| 2403 | :info:build ^ |
|---|
| 2404 | :info:build graph_optimize.cpp:304:9: note: in instantiation of function template specialization 'merge_from_matching<lemon::MaxBipartiteMatching<lemon::SmartBpUGraph> >' requested here |
|---|
| 2405 | :info:build merge_from_matching(containment, matcher, scaffolds); |
|---|
| 2406 | :info:build ^ |
|---|
| 2407 | :info:build ./lemon/smart_graph.h:912:8: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2408 | :info:build Node aNode(const UEdge& edge) const { |
|---|
| 2409 | :info:build ^ |
|---|
| 2410 | :info:build ./lemon/smart_graph.h:919:15: note: must qualify identifier to find this declaration in dependent base class |
|---|
| 2411 | :info:build static bool aNode(const Node& node) { |
|---|
| 2412 | :info:build ^ |
|---|
| 2413 | :info:build 3 warnings and 5 errors generated. |
|---|
| 2414 | :info:build make[2]: *** [graph_optimize.o] Error 1 |
|---|
| 2415 | :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3/src' |
|---|
| 2416 | :info:build make[1]: *** [all-recursive] Error 1 |
|---|
| 2417 | :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3' |
|---|
| 2418 | :info:build make: *** [all] Error 2 |
|---|
| 2419 | :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3' |
|---|
| 2420 | :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/work/cufflinks-0.9.3" && /usr/bin/make -j24 -w all |
|---|
| 2421 | :info:build Exit code: 2 |
|---|
| 2422 | :error:build org.macports.build for port cufflinks returned: command execution failed |
|---|
| 2423 | :debug:build Error code: CHILDSTATUS 13164 2 |
|---|
| 2424 | :debug:build Backtrace: command execution failed |
|---|
| 2425 | while executing |
|---|
| 2426 | "system -nice 0 $fullcmdstring" |
|---|
| 2427 | ("eval" body line 1) |
|---|
| 2428 | invoked from within |
|---|
| 2429 | "eval system $notty $nice \$fullcmdstring" |
|---|
| 2430 | invoked from within |
|---|
| 2431 | "command_exec build" |
|---|
| 2432 | (procedure "portbuild::build_main" line 8) |
|---|
| 2433 | invoked from within |
|---|
| 2434 | "$procedure $targetname" |
|---|
| 2435 | :info:build Warning: targets not executed for cufflinks: org.macports.activate org.macports.build org.macports.destroot org.macports.install |
|---|
| 2436 | :notice:build Please see the log file for port cufflinks for details: |
|---|
| 2437 | /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_cufflinks/cufflinks/main.log |
|---|
