Ticket #41772: main.log

File main.log, 8.2 KB (added by 474403670@…, 11 years ago)

details

Line 
1version:1
2:debug:main mapm3 has no conflicts
3:debug:main Executing org.macports.main (mapm3)
4:debug:main changing euid/egid - current euid: 0 - current egid: 0
5:debug:main egid changed to: 501
6:debug:main euid changed to: 502
7:debug:main Skipping completed org.macports.archivefetch (mapm3)
8:debug:main Privilege de-escalation not attempted as not running as root.
9:debug:main Skipping completed org.macports.fetch (mapm3)
10:debug:main Privilege de-escalation not attempted as not running as root.
11:debug:main Skipping completed org.macports.checksum (mapm3)
12:debug:main Privilege de-escalation not attempted as not running as root.
13:debug:main Skipping completed org.macports.extract (mapm3)
14:debug:main Privilege de-escalation not attempted as not running as root.
15:debug:main Skipping completed org.macports.patch (mapm3)
16:debug:main Privilege de-escalation not attempted as not running as root.
17:debug:main Skipping completed org.macports.configure (mapm3)
18:debug:main Privilege de-escalation not attempted as not running as root.
19:debug:build build phase started at Thu Dec 12 10:59:50 CST 2013
20:notice:build --->  Building mapm3
21:debug:build Executing org.macports.build (mapm3)
22:debug:build Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mapm3/mapm3/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.9'
23:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mapm3/mapm3/work/mapm3-source" && /usr/bin/make -j4 -w all'
24:debug:build Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mapm3/mapm3/work/mapm3-source" && /usr/bin/make -j4 -w all
25:info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mapm3/mapm3/work/mapm3-source'
26:info:build ld -r ./lib/memlib.o ./lib/mathlib.o ./lib/iolib.o ./lib/msglib.o ./lib/strlib.o ./lib/shell.o  ./lib/table.o   ./lib/eqn.o   ./lib/stats.o  ./lib/syscode.o  -o lib.o
27:info:build cc -fwritable-strings -I./lib/ -D_SYS_DARWIN -DUSE_RAND48 -c mapm/reader.c -o mapm/reader.o
28:info:build cc -fwritable-strings -I./lib/ -D_SYS_DARWIN -DUSE_RAND48 -c mapm/quick23.c -o mapm/quick23.o
29:info:build cc -fwritable-strings -I./lib/ -D_SYS_DARWIN -DUSE_RAND48 -c mapm/maps.c -o mapm/maps.o
30:info:build In file included from mapm/maps.c:16:
31:info:build In file included from mapm/mapm.h:416:
32:info:build mapm/toplevel.h:46:1: warning: '/*' within block comment [-Wcomment]
33:info:build In file included from mapm/quick23.c:15:
34:info:build In file included from mapm/mapm.h:416:
35:info:build mapm/toplevel.h:46:1: warning: '/*' within block comment [-Wcomment]
36:info:build /* side-effects locus[], *num_loci; and, if verbose, may print a msg.
37:info:build ^
38:info:build /* side-effects locus[], *num_loci; and, if verbose, may print a msg.
39:info:build ^
40:info:build In file included from mapm/reader.c:17:
41:info:build In file included from mapm/mapm.h:416:
42:info:build mapm/toplevel.h:46:1: warning: '/*' within block comment [-Wcomment]
43:info:build /* side-effects locus[], *num_loci; and, if verbose, may print a msg.
44:info:build ^
45:info:build mapm/reader.c:424:16: warning: '&&' within '||' [-Wlogical-op-parentheses]
46:info:build             if (first && xstreq(str,"symbols") || xstreq(str,"symbols:")) {
47:info:build                 ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ ~~
48:info:build mapm/reader.c:424:16: note: place parentheses around the '&&' expression to silence this warning
49:info:build             if (first && xstreq(str,"symbols") || xstreq(str,"symbols:")) {
50:info:build                       ^
51:info:build                 (                             )
52:info:build mapm/reader.c:388:38: warning: while loop has empty body [-Wempty-body]
53:info:build     getdataln(fp); while(nullstr(ln)); crunch(ln);
54:info:build                                      ^
55:info:build mapm/reader.c:388:38: note: put the semicolon on a separate line to silence this warning
56:info:build 1 warning generated.
57:info:build cc -fwritable-strings -I./lib/ -D_SYS_DARWIN -DUSE_RAND48 -c mapm/info.c -o mapm/info.o
58:info:build mapm/reader.c:697:6: warning: implicit declaration of function 'add_to_seg_dist' is invalid in C99 [-Wimplicit-function-declaration]
59:info:build             add_to_seg_dist(converted,locus_num);
60:info:build             ^
61:info:build mapm/reader.c:704:5: warning: implicit declaration of function 'scale_seg_dist' is invalid in C99 [-Wimplicit-function-declaration]
62:info:build     scale_seg_dist(locus_num);
63:info:build     ^
64:info:build mapm/reader.c:884:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
65:info:build add_to_seg_dist(c,locus)
66:info:build ^~~~~~~~~~~~~~~
67:info:build mapm/reader.c:891:6: error: non-void function 'add_to_seg_dist' should return a value [-Wreturn-type]
68:info:build             return;
69:info:build             ^
70:info:build mapm/reader.c:895:6: error: non-void function 'add_to_seg_dist' should return a value [-Wreturn-type]
71:info:build             return;
72:info:build             ^
73:info:build mapm/reader.c:907:6: error: non-void function 'add_to_seg_dist' should return a value [-Wreturn-type]
74:info:build             return;
75:info:build             ^
76:info:build mapm/reader.c:919:6: error: non-void function 'add_to_seg_dist' should return a value [-Wreturn-type]
77:info:build             return;
78:info:build             ^
79:info:build mapm/reader.c:924:6: error: non-void function 'add_to_seg_dist' should return a value [-Wreturn-type]
80:info:build             return;
81:info:build             ^
82:info:build mapm/reader.c:929:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
83:info:build scale_seg_dist(locus)
84:info:build ^~~~~~~~~~~~~~
85:info:build 7 warnings and 5 errors generated.
86:info:build make: *** [mapm/reader.o] Error 1
87:info:build make: *** Waiting for unfinished jobs....
88:info:build 1 warning generated.
89:info:build In file included from mapm/info.c:16:
90:info:build In file included from mapm/mapm.h:416:
91:info:build mapm/toplevel.h:46:1: warning: '/*' within block comment [-Wcomment]
92:info:build /* side-effects locus[], *num_loci; and, if verbose, may print a msg.
93:info:build ^
94:info:build mapm/info.c:358:16: warning: implicit declaration of function 'get_triple' is invalid in C99 [-Wimplicit-function-declaration]
95:info:build     } else if (get_triple(locus1,locus2,locus3,&r1,&r2,&r3)) {
96:info:build                ^
97:info:build mapm/info.c:401:12: warning: expression result unused [-Wunused-value]
98:info:build                     for (p; p->next_same2 != NULL; p= p->next_same2) {}
99:info:build                          ^
100:info:build mapm/info.c:731:15: warning: implicit declaration of function 'valid_new_name' is invalid in C99 [-Wimplicit-function-declaration]
101:info:build     else if (!valid_new_name(name)) /* check class names too */
102:info:build               ^
103:info:build 4 warnings generated.
104:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mapm3/mapm3/work/mapm3-source'
105:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mapm3/mapm3/work/mapm3-source" && /usr/bin/make -j4 -w all
106:info:build Exit code: 2
107:error:build org.macports.build for port mapm3 returned: command execution failed
108:debug:build Error code: CHILDSTATUS 971 2
109:debug:build Backtrace: command execution failed
110    while executing
111"system -nice 0 $fullcmdstring"
112    ("eval" body line 1)
113    invoked from within
114"eval system $notty $nice \$fullcmdstring"
115    invoked from within
116"command_exec build"
117    (procedure "portbuild::build_main" line 8)
118    invoked from within
119"$procedure $targetname"
120:info:build Warning: targets not executed for mapm3: org.macports.activate org.macports.build org.macports.destroot org.macports.install
121:notice:build Please see the log file for port mapm3 for details:
122    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_mapm3/mapm3/main.log