Ticket #42120: cufflinks-2.1.1.diff

File cufflinks-2.1.1.diff, 1.9 KB (added by ryandesign (Ryan Carsten Schmidt), 11 years ago)

patch which does not work yet

  • Portfile

     
     1# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
    12# $Id$
    23
    34PortSystem          1.0
    45
    56name                cufflinks
    6 version             0.9.3
     7version             2.1.1
    78categories          science biology
    89platforms           darwin
    910maintainers         gmail.com:haroldpimentel
    10 license             Boost
     11license             Boost-1.0
    1112
    1213description         Cufflinks assembles transcripts, estimates their abundances,\
    1314                    and tests for differential expression and regulation in RNA-Seq samples.
     
    2021                    transcripts based on how many reads support each one.
    2122
    2223homepage            http://cufflinks.cbcb.umd.edu/
    23 master_sites        ${homepage}downloads
     24master_sites        ${homepage}downloads/
    2425
    25 checksums           sha1        f6c28d8f98569f8d1eae72ff050ce7d2d06bfba4\
    26                     rmd160      b9b3b8ec322e79e0e6f2b4b2f23de27b58ec44f4
     26checksums           rmd160  4a612f98be24d7d31520be0501f1f4bcd3e76e0f\
     27                    sha256  9cbaf1d8f53aa53e6d6beec12420125ee487f9de520417a6b1add3306d01a81e
    2728
    2829depends_lib         port:zlib \
    2930                    port:samtools \
     
    3233# samtools is not universal
    3334universal_variant   no
    3435
     36configure.args      --with-bam=${prefix} \
     37                    --with-boost=${prefix} \
     38                    --with-eigen=no \
     39                    --with-zlib=${prefix}
     40
    3541post-destroot {
    3642    xinstall -d ${destroot}${prefix}/share/doc/${name}
    3743    xinstall -m 644 -W ${worksrcpath} \
     
    4046        README \
    4147        ${destroot}${prefix}/share/doc/${name}
    4248}
     49
     50livecheck.type      regex
     51livecheck.url       [lindex ${master_sites} 0]
     52livecheck.regex     ${name}-(\[0-9.\]+)${extract.suffix}