Ticket #46249: Portfile.diff

Portfile

@@ -5 +5 @@
 PortGroup           python 1.0
 
 name                pdb2pqr
-version             1.7
-revision            2
+version             1.9.0
 categories          science
 maintainers         gmail.com:howarth.at.macports
 description         automate Poisson-Boltzmann electrostatics calculations
@@ -16 +15 @@
                     protein files in PDB format to PQR format.
 homepage            http://pdb2pqr.sourceforge.net/
 platforms           darwin
-master_sites        sourceforge
-checksums           md5     058622cb2ca6ca12af04d4f11b272951 \
-                    sha1    df2bf4303dbc64b69a20d48331386d8c08c234f1
-
-python.default_version  26
-
-use_parallel_build  no
-use_configure       yes
-build.cmd           make
-build.target        all
+master_sites        https://github.com/Electrostatics/apbs-${name}/releases/download/${name}-${version}/
+distfiles           ${name}-src-${version}.tar.gz
+checksums           md5     3ffba8fd6ae4c33badb31ec07654e39d \
+                    sha1    256c6bb08f7fc7fe79b24263f37ee8893152226c
+
+python.default_version  27
+
+build.cmd           ${prefix}/bin/python2.7
+build.target        scons/scons.py BUILD_PDB2PKA=True
+
 depends_lib         port:py${python.version}-numeric
 
+test.run            yes
+test.cmd            ${prefix}/bin/python2.7
+test.target         scons/scons.py complete-test
+
 post-patch {
-    reinplace   "s|fort xlf95 lf95 g95|${configure.f77}|g" ${worksrcpath}/propka/configure
-    reinplace   "s|/usr/bin/env python|${python.bin}|g" ${worksrcpath}/pdb2pka/pka.py
-    reinplace   "s|/usr/bin/python|${python.bin}|g" ${worksrcpath}/src/psize.py
-    reinplace   "s|-Wl,-framework -Wl,Python -bundle|${python.lib}  -bundle|g" \
-                                                    ${worksrcpath}/configure \
-                                                    ${worksrcpath}/propka/configure
-    delete      ${worksrcpath}/contrib
-}
-configure.args      --with-max-atoms="1000000" --without-url --with-python=${python.bin}
-pre-configure {
-    configure.args-append   -with-f77=${configure.f77}
+      system "cd ${worksrcpath}; /usr/bin/find . -type f -name '*.py' -print0 | xargs -0 perl -pi -e 's|/usr/bin/python|${prefix}/bin/python2.7|g'"
+      system "cd ${worksrcpath}; /usr/bin/find . -type f -name '*.py' -print0 | xargs -0 perl -pi -e 's|/usr/bin/env python|${prefix}/bin/python2.7|g'"
+}
+pre-destroot {
+      system "/usr/bin/find ${worksrcpath} -name '*.pyc' -delete"
+      foreach f {build_config.py pdb2pqr.py.in tools SConscript-error.py SConscript-install.py SConscript-main.py SConscript scons site_scons} {
+        delete ${worksrcpath}/${f}
+      }
 }
 destroot {
-      system "find ${worksrcpath} -name '*.o' -delete"
-      file mkdir ${destroot}${prefix}/share/{name}
-      move ${worksrcpath} ${destroot}${prefix}/share/${name}
+      move ${worksrcpath} ${destroot}${prefix}/share/
       system "echo '#!/bin/zsh -f' >| ${destroot}${prefix}/bin/pdb2pqr"
-      system "echo '${prefix}/share/${name}/pdb2pqr.py \"\$@\"' >> ${destroot}${prefix}/bin/pdb2pqr"
+      system "echo '${prefix}/share/${name}-${version}/pdb2pqr.py \"\$@\"' >> ${destroot}${prefix}/bin/pdb2pqr"
       file attributes ${destroot}${prefix}/bin/pdb2pqr -permissions a+x
+      file attributes ${destroot}${prefix}/share/${name}-${version}/propka30/propka.py -permissions a+x
       system "echo '#!/bin/zsh -f' >| ${destroot}${prefix}/bin/propka"
-      system "echo '${prefix}/share/${name}/propka/propka \"\$@\"' >> ${destroot}${prefix}/bin/propka"
+      system "echo '${prefix}/share/${name}-${version}/propka30/propka.py \"\$@\"' >> ${destroot}${prefix}/bin/propka"
       file attributes ${destroot}${prefix}/bin/propka -permissions a+x
 }