1 | version:1 |
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2 | :debug:main epoch: in tree: 0 installed: 0 |
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3 | :debug:main cmake 3.3.2_1 exists in the ports tree |
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4 | :debug:main cmake 3.3.2_1 is the latest installed |
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5 | :debug:main cmake 3.3.2_1 is active |
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6 | :debug:main Merging existing variants '' into variants |
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7 | :debug:main new fully merged portvariants: |
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8 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/cmake |
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9 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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10 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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11 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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12 | :debug:main universal variant already exists, so not adding the default one |
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13 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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14 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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15 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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16 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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17 | :debug:main No need to upgrade! cmake 3.3.2_1 >= cmake 3.3.2_1 |
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18 | :debug:main epoch: in tree: 0 installed: 0 |
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19 | :debug:main curl 7.45.0_0 exists in the ports tree |
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20 | :debug:main curl 7.45.0_0 +ssl is the latest installed |
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21 | :debug:main curl 7.45.0_0 +ssl is active |
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22 | :debug:main Merging existing variants '+ssl' into variants |
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23 | :debug:main new fully merged portvariants: ssl + |
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24 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl |
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25 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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26 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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27 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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28 | :debug:main universal variant already exists, so not adding the default one |
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29 | :debug:main Executing variant ssl provides ssl |
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30 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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31 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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32 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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33 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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34 | :debug:main No need to upgrade! curl 7.45.0_0 >= curl 7.45.0_0 |
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35 | :debug:main epoch: in tree: 0 installed: 0 |
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36 | :debug:main zlib 1.2.8_0 exists in the ports tree |
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37 | :debug:main zlib 1.2.8_0 is the latest installed |
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38 | :debug:main zlib 1.2.8_0 is active |
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39 | :debug:main Merging existing variants '' into variants |
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40 | :debug:main new fully merged portvariants: |
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41 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib |
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42 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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43 | :debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl |
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44 | :debug:main adding the default universal variant |
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45 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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46 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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47 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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48 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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49 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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50 | :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0 |
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51 | :debug:main epoch: in tree: 1 installed: 1 |
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52 | :debug:main openssl 1.0.2d_0 exists in the ports tree |
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53 | :debug:main openssl 1.0.2d_0 is the latest installed |
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54 | :debug:main openssl 1.0.2d_0 is active |
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55 | :debug:main Merging existing variants '' into variants |
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56 | :debug:main new fully merged portvariants: |
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57 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl |
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58 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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59 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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60 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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61 | :debug:main universal variant already exists, so not adding the default one |
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62 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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63 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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64 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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65 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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66 | :debug:main No need to upgrade! openssl 1.0.2d_0 >= openssl 1.0.2d_0 |
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67 | :debug:main epoch: in tree: 0 installed: 0 |
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68 | :debug:main curl-ca-bundle 7.45.0_0 exists in the ports tree |
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69 | :debug:main curl-ca-bundle 7.45.0_0 is the latest installed |
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70 | :debug:main curl-ca-bundle 7.45.0_0 is active |
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71 | :debug:main Merging existing variants '' into variants |
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72 | :debug:main new fully merged portvariants: |
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73 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/net/curl |
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74 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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75 | :debug:main universal_variant is false, so not adding the default universal variant |
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76 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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77 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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78 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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79 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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80 | :debug:main No need to upgrade! curl-ca-bundle 7.45.0_0 >= curl-ca-bundle 7.45.0_0 |
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81 | :debug:main epoch: in tree: 0 installed: 0 |
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82 | :debug:main expat 2.1.0_0 exists in the ports tree |
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83 | :debug:main expat 2.1.0_0 is the latest installed |
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84 | :debug:main expat 2.1.0_0 is active |
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85 | :debug:main Merging existing variants '' into variants |
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86 | :debug:main new fully merged portvariants: |
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87 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat |
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88 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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89 | :debug:main adding the default universal variant |
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90 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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91 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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92 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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93 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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94 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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95 | :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0 |
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96 | :debug:main epoch: in tree: 0 installed: 0 |
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97 | :debug:main bzip2 1.0.6_0 exists in the ports tree |
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98 | :debug:main bzip2 1.0.6_0 is the latest installed |
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99 | :debug:main bzip2 1.0.6_0 is active |
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100 | :debug:main Merging existing variants '' into variants |
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101 | :debug:main new fully merged portvariants: |
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102 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2 |
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103 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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104 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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105 | :debug:main universal variant already exists, so not adding the default one |
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106 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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107 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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108 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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109 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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110 | :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0 |
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111 | :debug:main epoch: in tree: 0 installed: 0 |
---|
112 | :debug:main libarchive 3.1.2_1 exists in the ports tree |
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113 | :debug:main libarchive 3.1.2_1 is the latest installed |
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114 | :debug:main libarchive 3.1.2_1 is active |
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115 | :debug:main Merging existing variants '' into variants |
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116 | :debug:main new fully merged portvariants: |
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117 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/libarchive |
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118 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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119 | :debug:main adding the default universal variant |
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120 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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121 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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122 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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123 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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124 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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125 | :debug:main No need to upgrade! libarchive 3.1.2_1 >= libarchive 3.1.2_1 |
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126 | :debug:main epoch: in tree: 0 installed: 0 |
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127 | :debug:main libxml2 2.9.2_2 exists in the ports tree |
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128 | :debug:main libxml2 2.9.2_2 is the latest installed |
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129 | :debug:main libxml2 2.9.2_2 is active |
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130 | :debug:main Merging existing variants '' into variants |
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131 | :debug:main new fully merged portvariants: |
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132 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libxml2 |
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133 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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134 | :debug:main adding the default universal variant |
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135 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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136 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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137 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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138 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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139 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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140 | :debug:main No need to upgrade! libxml2 2.9.2_2 >= libxml2 2.9.2_2 |
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141 | :debug:main epoch: in tree: 0 installed: 0 |
---|
142 | :debug:main libiconv 1.14_0 exists in the ports tree |
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143 | :debug:main libiconv 1.14_0 is the latest installed |
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144 | :debug:main libiconv 1.14_0 is active |
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145 | :debug:main Merging existing variants '' into variants |
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146 | :debug:main new fully merged portvariants: |
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147 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv |
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148 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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149 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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150 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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151 | :debug:main universal variant already exists, so not adding the default one |
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152 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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153 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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154 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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155 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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156 | :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0 |
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157 | :debug:main epoch: in tree: 0 installed: 0 |
---|
158 | :debug:main xz 5.2.2_0 exists in the ports tree |
---|
159 | :debug:main xz 5.2.2_0 is the latest installed |
---|
160 | :debug:main xz 5.2.2_0 is active |
---|
161 | :debug:main Merging existing variants '' into variants |
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162 | :debug:main new fully merged portvariants: |
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163 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/xz |
---|
164 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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165 | :debug:main adding the default universal variant |
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166 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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167 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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168 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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169 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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170 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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171 | :debug:main No need to upgrade! xz 5.2.2_0 >= xz 5.2.2_0 |
---|
172 | :debug:main epoch: in tree: 2 installed: 2 |
---|
173 | :debug:main gettext 0.19.6_0 exists in the ports tree |
---|
174 | :debug:main gettext 0.19.6_0 is the latest installed |
---|
175 | :debug:main gettext 0.19.6_0 is active |
---|
176 | :debug:main Merging existing variants '' into variants |
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177 | :debug:main new fully merged portvariants: |
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178 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext |
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179 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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180 | :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl |
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181 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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182 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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183 | :debug:main compiler clang 602.0.53 not blacklisted because it doesn't match {clang < 211.10.1} |
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184 | :debug:main universal variant already exists, so not adding the default one |
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185 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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186 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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187 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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188 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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189 | :debug:main No need to upgrade! gettext 0.19.6_0 >= gettext 0.19.6_0 |
---|
190 | :debug:main epoch: in tree: 0 installed: 0 |
---|
191 | :debug:main ncurses 6.0_0 exists in the ports tree |
---|
192 | :debug:main ncurses 6.0_0 is the latest installed |
---|
193 | :debug:main ncurses 6.0_0 is active |
---|
194 | :debug:main Merging existing variants '' into variants |
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195 | :debug:main new fully merged portvariants: |
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196 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses |
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197 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
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198 | :debug:main adding the default universal variant |
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199 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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200 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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201 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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202 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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203 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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204 | :debug:main No need to upgrade! ncurses 6.0_0 >= ncurses 6.0_0 |
---|
205 | :debug:main epoch: in tree: 0 installed: 0 |
---|
206 | :debug:main lzo2 2.09_0 exists in the ports tree |
---|
207 | :debug:main lzo2 2.09_0 is the latest installed |
---|
208 | :debug:main lzo2 2.09_0 is active |
---|
209 | :debug:main Merging existing variants '' into variants |
---|
210 | :debug:main new fully merged portvariants: |
---|
211 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/lzo2 |
---|
212 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
---|
213 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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214 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
---|
215 | :debug:main universal variant already exists, so not adding the default one |
---|
216 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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217 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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218 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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219 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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220 | :debug:main No need to upgrade! lzo2 2.09_0 >= lzo2 2.09_0 |
---|
221 | :debug:main epoch: in tree: 0 installed: 0 |
---|
222 | :debug:main maloc 1.5_2 exists in the ports tree |
---|
223 | :debug:main maloc 1.5_2 is the latest installed |
---|
224 | :debug:main maloc 1.5_2 is active |
---|
225 | :debug:main Merging existing variants '' into variants |
---|
226 | :debug:main new fully merged portvariants: |
---|
227 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/maloc |
---|
228 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
---|
229 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
---|
230 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
---|
231 | :debug:main universal variant already exists, so not adding the default one |
---|
232 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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233 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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234 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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235 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
---|
236 | :debug:main No need to upgrade! maloc 1.5_2 >= maloc 1.5_2 |
---|
237 | :debug:main epoch: in tree: 0 installed: 0 |
---|
238 | :debug:main readline 6.3.003_1 exists in the ports tree |
---|
239 | :debug:main readline 6.3.003_1 is the latest installed |
---|
240 | :debug:main readline 6.3.003_1 is active |
---|
241 | :debug:main Merging existing variants '' into variants |
---|
242 | :debug:main new fully merged portvariants: |
---|
243 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/readline |
---|
244 | :debug:main OS darwin/14.5.0 (Mac OS X 10.10) arch i386 |
---|
245 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
---|
246 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
---|
247 | :debug:main universal variant already exists, so not adding the default one |
---|
248 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
---|
249 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
---|
250 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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251 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
---|
252 | :debug:main No need to upgrade! readline 6.3.003_1 >= readline 6.3.003_1 |
---|
253 | :msg:main ---> Computing dependencies for apbs:info:main .:debug:main Searching for dependency: cmake |
---|
254 | :debug:main Found Dependency: receipt exists for cmake |
---|
255 | :debug:main Searching for dependency: maloc |
---|
256 | :debug:main Found Dependency: receipt exists for maloc |
---|
257 | :debug:main Searching for dependency: readline |
---|
258 | :debug:main Found Dependency: receipt exists for readline |
---|
259 | :msg:main |
---|
260 | :debug:main Executing org.macports.main (apbs) |
---|
261 | :debug:main changing euid/egid - current euid: 0 - current egid: 0 |
---|
262 | :debug:main egid changed to: 501 |
---|
263 | :debug:main euid changed to: 502 |
---|
264 | :debug:fetch fetch phase started at Mon Nov 9 20:54:10 EST 2015 |
---|
265 | :notice:fetch ---> Fetching distfiles for apbs |
---|
266 | :debug:fetch Executing proc-pre-org.macports.fetch-fetch-0 |
---|
267 | :debug:fetch Executing proc-pre-org.macports.fetch-fetch-1 |
---|
268 | :debug:fetch Executing proc-pre-org.macports.fetch-fetch-2 |
---|
269 | :debug:fetch Executing org.macports.fetch (apbs) |
---|
270 | :debug:fetch Privilege de-escalation not attempted as not running as root. |
---|
271 | :debug:checksum checksum phase started at Mon Nov 9 20:54:10 EST 2015 |
---|
272 | :notice:checksum ---> Verifying checksums for apbs |
---|
273 | :debug:checksum Executing org.macports.checksum (apbs) |
---|
274 | :info:checksum ---> Checksumming apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz |
---|
275 | :debug:checksum Calculated (rmd160) is 5c4d583e12deb3fbc2b5a8031882311cbfd22c7e |
---|
276 | :debug:checksum Correct (rmd160) checksum for apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz |
---|
277 | :debug:checksum Calculated (sha256) is f98ce6a51d8f813e1b4fa626c054ddbf7a985403ca30f890733cb1abf2bd6e05 |
---|
278 | :debug:checksum Correct (sha256) checksum for apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz |
---|
279 | :debug:checksum Privilege de-escalation not attempted as not running as root. |
---|
280 | :debug:extract extract phase started at Mon Nov 9 20:54:12 EST 2015 |
---|
281 | :notice:extract ---> Extracting apbs |
---|
282 | :debug:extract Executing org.macports.extract (apbs) |
---|
283 | :info:extract ---> Extracting apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz |
---|
284 | :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' |
---|
285 | :debug:extract Environment: |
---|
286 | CC_PRINT_OPTIONS='YES' |
---|
287 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS' |
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288 | CPATH='/opt/local/include' |
---|
289 | LIBRARY_PATH='/opt/local/lib' |
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290 | MACOSX_DEPLOYMENT_TARGET='10.10' |
---|
291 | :debug:extract Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' | /usr/bin/tar -xf -' |
---|
292 | :debug:extract Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/apbs/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063.tar.gz' | /usr/bin/tar -xf - |
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293 | :debug:extract euid/egid changed to: 0/0 |
---|
294 | :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work to macports |
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295 | :debug:extract euid/egid changed to: 502/501 |
---|
296 | :debug:extract Executing proc-post-org.macports.extract-extract-0 |
---|
297 | :debug:extract Privilege de-escalation not attempted as not running as root. |
---|
298 | :debug:patch patch phase started at Mon Nov 9 20:54:16 EST 2015 |
---|
299 | :debug:patch Executing org.macports.patch (apbs) |
---|
300 | :debug:patch Privilege de-escalation not attempted as not running as root. |
---|
301 | :debug:configure configure phase started at Mon Nov 9 20:54:16 EST 2015 |
---|
302 | :notice:configure ---> Configuring apbs |
---|
303 | :debug:configure Using compiler 'Xcode Clang' |
---|
304 | :debug:configure Executing proc-pre-org.macports.configure-configure-0 |
---|
305 | :debug:configure Executing proc-pre-org.macports.configure-configure-1 |
---|
306 | :debug:configure Executing proc-pre-org.macports.configure-configure-2 |
---|
307 | :debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: maloc readline cmake |
---|
308 | :debug:configure Executing org.macports.configure (apbs) |
---|
309 | :debug:configure Environment: |
---|
310 | CC='/usr/bin/clang' |
---|
311 | CC_PRINT_OPTIONS='YES' |
---|
312 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS' |
---|
313 | CFLAGS='-pipe -Os -arch x86_64' |
---|
314 | CPATH='/opt/local/include' |
---|
315 | CPPFLAGS='-I/opt/local/include' |
---|
316 | CXX='/usr/bin/clang++' |
---|
317 | CXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' |
---|
318 | F77FLAGS='-m64' |
---|
319 | F90FLAGS='-pipe -Os -m64' |
---|
320 | FCFLAGS='-pipe -Os -m64' |
---|
321 | FFLAGS='-pipe -Os' |
---|
322 | INSTALL='/usr/bin/install -c' |
---|
323 | LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64' |
---|
324 | LIBRARY_PATH='/opt/local/lib' |
---|
325 | MACOSX_DEPLOYMENT_TARGET='10.10' |
---|
326 | OBJC='/usr/bin/clang' |
---|
327 | OBJCFLAGS='-pipe -Os -arch x86_64' |
---|
328 | OBJCXX='/usr/bin/clang++' |
---|
329 | OBJCXXFLAGS='-pipe -Os -arch x86_64 -stdlib=libc++' |
---|
330 | :debug:configure Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DENABLE_OPENMP:BOOL=OFF -DENABLE_BEM=OFF -DENABLE_MPI:BOOL=OFF -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.10" -DCMAKE_OSX_SYSROOT="/" ./apbs' |
---|
331 | :debug:configure Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX=/opt/local -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_FIND_FRAMEWORK=LAST -Wno-dev -DENABLE_OPENMP:BOOL=OFF -DENABLE_BEM=OFF -DENABLE_MPI:BOOL=OFF -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="x86_64" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.10" -DCMAKE_OSX_SYSROOT="/" ./apbs |
---|
332 | :info:configure -- The C compiler identification is AppleClang 6.1.0.6020053 |
---|
333 | :info:configure -- The CXX compiler identification is AppleClang 6.1.0.6020053 |
---|
334 | :info:configure CMake Warning at /opt/local/share/cmake-3.3/Modules/Platform/Darwin.cmake:197 (message): |
---|
335 | :info:configure The SDK Library/Frameworks path |
---|
336 | :info:configure |
---|
337 | :info:configure //Library/Frameworks |
---|
338 | :info:configure |
---|
339 | :info:configure is not set up correctly on this system. This is known to occur when |
---|
340 | :info:configure installing Xcode 3.2.6: |
---|
341 | :info:configure |
---|
342 | :info:configure http://bugs.python.org/issue14018 |
---|
343 | :info:configure |
---|
344 | :info:configure The problem may cause build errors that report missing system frameworks. |
---|
345 | :info:configure Fix your SDK symlinks to resolve this issue and avoid this warning. |
---|
346 | :info:configure Call Stack (most recent call first): |
---|
347 | :info:configure /opt/local/share/cmake-3.3/Modules/CMakeSystemSpecificInformation.cmake:36 (include) |
---|
348 | :info:configure CMakeLists.txt:46 (project) |
---|
349 | :info:configure |
---|
350 | :info:configure |
---|
351 | :info:configure -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang |
---|
352 | :info:configure -- Check for working C compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -- works |
---|
353 | :info:configure -- Detecting C compiler ABI info |
---|
354 | :info:configure -- Detecting C compiler ABI info - done |
---|
355 | :info:configure -- Detecting C compile features |
---|
356 | :info:configure -- Detecting C compile features - done |
---|
357 | :info:configure -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ |
---|
358 | :info:configure -- Check for working CXX compiler: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -- works |
---|
359 | :info:configure -- Detecting CXX compiler ABI info |
---|
360 | :info:configure -- Detecting CXX compiler ABI info - done |
---|
361 | :info:configure -- Detecting CXX compile features |
---|
362 | :info:configure -- Detecting CXX compile features - done |
---|
363 | :info:configure -- Setting project paths |
---|
364 | :info:configure -- Setting lookup paths for headers and libraries |
---|
365 | :info:configure -- Computing machine epsilon values |
---|
366 | :info:configure -- Floating point epsilon is 2.220446e-16 |
---|
367 | :info:configure -- Double precision epsilon is 2.220446e-16 |
---|
368 | :info:configure -- Looking for time |
---|
369 | :info:configure -- Looking for time - found |
---|
370 | :info:configure -- Looking for rand |
---|
371 | :info:configure -- Looking for rand - found |
---|
372 | :info:configure -- Looking for srand |
---|
373 | :info:configure -- Looking for srand - found |
---|
374 | :info:configure CMake Warning at CMakeLists.txt:232 (message): |
---|
375 | :info:configure Did not find fetk |
---|
376 | :info:configure |
---|
377 | :info:configure |
---|
378 | :info:configure -- External maloc library was found: /opt/local/lib/libmaloc.dylib |
---|
379 | :info:configure -- Looking for include file maloc/maloc.h |
---|
380 | :info:configure -- Looking for include file maloc/maloc.h - found |
---|
381 | :info:configure -- External maloc headers found |
---|
382 | :info:configure -- Inline functions enabled |
---|
383 | :info:configure libs: -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow-lmaloc-lm |
---|
384 | :info:configure -- Adding apbs_generic |
---|
385 | :info:configure -- With source files nosh.c;mgparm.c;femparm.c;pbeparm.c;bemparm.c;geoflowparm.c;apolparm.c;vacc.c;valist.c;vatom.c;vpbe.c;vcap.c;vclist.c;vstring.c;vparam.c;vgreen.c |
---|
386 | :info:configure -- With external header files nosh.h;mgparm.h;femparm.h;pbeparm.h;bemparm.h;geoflowparm.h;apolparm.h;vacc.h;valist.h;vatom.h;vpbe.h;vcap.h;vclist.h;vstring.h;vparam.h;vgreen.h;vmatrix.h;vhal.h;vunit.h |
---|
387 | :info:configure -- With internal header files |
---|
388 | :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm |
---|
389 | :info:configure -- Added apbs_generic |
---|
390 | :info:configure -- Adding apbs_pmgc |
---|
391 | :info:configure -- With source files buildAd.c;buildBd.c;buildGd.c;buildPd.c;cgd.c;gsd.c;matvecd.c;mgcsd.c;mgdrvd.c;mgsubd.c;mikpckd.c;mlinpckd.c;mypdec.c;newtond.c;newdrvd.c;powerd.c;smoothd.c;mgfasd.c |
---|
392 | :info:configure -- With external header files buildAd.h;buildBd.h;buildGd.h;buildPd.h;cgd.h;gsd.h;matvecd.h;mgcsd.h;mgdrvd.h;mgsubd.h;mikpckd.h;mlinpckd.h;mypdec.h;newtond.h;newdrvd.h;powerd.h;smoothd.h;mgfasd.h |
---|
393 | :info:configure -- With internal header files |
---|
394 | :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm |
---|
395 | :info:configure -- Added apbs_pmgc |
---|
396 | :info:configure -- Adding apbs_mg |
---|
397 | :info:configure -- With source files vgrid.c;vmgrid.c;vopot.c;vpmg.c;vpmgp.c |
---|
398 | :info:configure -- With external header files vgrid.h;vmgrid.h;vopot.h;vpmg.h;vpmgp.h |
---|
399 | :info:configure -- With internal header files |
---|
400 | :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm;apbs_generic;apbs_pmgc |
---|
401 | :info:configure -- Added apbs_mg |
---|
402 | :info:configure -- Adding apbs_geoflow |
---|
403 | :info:configure -- With source files cpbconcz2.cpp;modules.cpp;pbsolvercz.cpp;solvationsub.cpp;subfunction.cpp;surfconcz.cpp |
---|
404 | :info:configure -- With external header files cpbconcz2.h |
---|
405 | :info:configure -- With internal header files |
---|
406 | :info:configure -- With library dependencies -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm |
---|
407 | :info:configure -- Added apbs_geoflow |
---|
408 | :info:configure -- |
---|
409 | :info:configure -- |
---|
410 | :info:configure -- -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow;-lmaloc;-lm apbs_generic;apbs_pmgc;apbs_mg;apbs_geoflow |
---|
411 | :info:configure -- |
---|
412 | :info:configure -- -std=c99 |
---|
413 | :info:configure -- Supplemental tools enabled |
---|
414 | :info:configure -- Building mesh |
---|
415 | :info:configure -- libraries: apbs_generic;apbs_mg;apbs_pmgc |
---|
416 | :info:configure -- Building manip |
---|
417 | :info:configure -- libraries: apbs_generic;apbs_mg;apbs_pmgc |
---|
418 | :info:configure -- Configuring done |
---|
419 | :info:configure -- Generating done |
---|
420 | :info:configure -- Build files have been written to: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 |
---|
421 | :debug:configure Privilege de-escalation not attempted as not running as root. |
---|
422 | :debug:build build phase started at Mon Nov 9 20:54:54 EST 2015 |
---|
423 | :notice:build ---> Building apbs |
---|
424 | :debug:build Executing org.macports.build (apbs) |
---|
425 | :debug:build Environment: |
---|
426 | CC_PRINT_OPTIONS='YES' |
---|
427 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/.CC_PRINT_OPTIONS' |
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428 | CPATH='/opt/local/include' |
---|
429 | LIBRARY_PATH='/opt/local/lib' |
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430 | MACOSX_DEPLOYMENT_TARGET='10.10' |
---|
431 | :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /usr/bin/make -j8 -w all VERBOSE=ON' |
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432 | :debug:build Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063" && /usr/bin/make -j8 -w all VERBOSE=ON |
---|
433 | :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
---|
434 | :info:build /opt/local/bin/cmake -H/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs -B/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 --check-build-system CMakeFiles/Makefile.cmake 0 |
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435 | :info:build /opt/local/bin/cmake -E cmake_progress_start /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/CMakeFiles /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/CMakeFiles/progress.marks |
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436 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f CMakeFiles/Makefile2 all |
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437 | :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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438 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/depend |
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439 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/depend |
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440 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/geoflow/CMakeFiles/apbs_geoflow.dir/build.make src/geoflow/CMakeFiles/apbs_geoflow.dir/depend |
---|
441 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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442 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/DependInfo.cmake --color= |
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443 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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444 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake --color= |
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445 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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446 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake --color= |
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447 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/depend.internal". |
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448 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow/CMakeFiles/apbs_geoflow.dir/depend.internal". |
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449 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". |
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450 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic/CMakeFiles/apbs_generic.dir/depend.internal". |
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451 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". |
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452 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc/CMakeFiles/apbs_pmgc.dir/depend.internal". |
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453 | :info:build Scanning dependencies of target apbs_geoflow |
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454 | :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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455 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/geoflow/CMakeFiles/apbs_geoflow.dir/build.make src/geoflow/CMakeFiles/apbs_geoflow.dir/build |
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456 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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457 | :info:build [ 2%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o |
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458 | :info:build [ 2%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o |
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459 | :info:build [ 5%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o |
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460 | :info:build [ 4%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/modules.cpp.o |
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461 | :info:build [ 5%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o |
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462 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/cpbconcz2.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/cpbconcz2.cpp |
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463 | :info:build [ 6%] Building CXX object src/geoflow/CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o |
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464 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/subfunction.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/subfunction.cpp |
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465 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/solvationsub.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/solvationsub.cpp |
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466 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/surfconcz.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/surfconcz.cpp |
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467 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/pbsolvercz.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/pbsolvercz.cpp |
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468 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/geoflow && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang++ -fpermissive -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -std=c++0x -o CMakeFiles/apbs_geoflow.dir/modules.cpp.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/geoflow/modules.cpp |
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469 | :info:build Scanning dependencies of target apbs_generic |
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470 | :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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471 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/generic/CMakeFiles/apbs_generic.dir/build.make src/generic/CMakeFiles/apbs_generic.dir/build |
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472 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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473 | :info:build [ 8%] Building C object src/generic/CMakeFiles/apbs_generic.dir/nosh.c.o |
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474 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/nosh.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/nosh.c |
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475 | :info:build Scanning dependencies of target apbs_pmgc |
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476 | :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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477 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f src/pmgc/CMakeFiles/apbs_pmgc.dir/build.make src/pmgc/CMakeFiles/apbs_pmgc.dir/build |
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478 | :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/nosh.c:432:9: warning: implicit declaration of function 'BEMparm_copy' is invalid in C99 [-Wimplicit-function-declaration] |
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479 | :info:build BEMparm_copy(thee->bemparm, source->bemparm); |
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480 | :info:build ^ |
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481 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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482 | :info:build [ 9%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildAd.c.o |
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483 | :info:build 1 warning generated. |
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484 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildAd.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildAd.c |
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485 | :info:build [ 10%] Building C object src/generic/CMakeFiles/apbs_generic.dir/mgparm.c.o |
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486 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/generic && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_generic.dir/mgparm.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/generic/mgparm.c |
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487 | :info:build [ 11%] Building C object src/pmgc/CMakeFiles/apbs_pmgc.dir/buildBd.c.o |
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488 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/pmgc && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_pmgc.dir/buildBd.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/pmgc/buildBd.c |
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533 | :info:build [ 36%] Building C object src/generic/CMakeFiles/apbs_generic.dir/vparam.c.o |
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560 | :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq ../../apbs/lib/libapbs_pmgc.a CMakeFiles/apbs_pmgc.dir/buildAd.c.o CMakeFiles/apbs_pmgc.dir/buildBd.c.o CMakeFiles/apbs_pmgc.dir/buildGd.c.o CMakeFiles/apbs_pmgc.dir/buildPd.c.o CMakeFiles/apbs_pmgc.dir/cgd.c.o CMakeFiles/apbs_pmgc.dir/gsd.c.o CMakeFiles/apbs_pmgc.dir/matvecd.c.o CMakeFiles/apbs_pmgc.dir/mgcsd.c.o CMakeFiles/apbs_pmgc.dir/mgdrvd.c.o CMakeFiles/apbs_pmgc.dir/mgsubd.c.o CMakeFiles/apbs_pmgc.dir/mikpckd.c.o CMakeFiles/apbs_pmgc.dir/mlinpckd.c.o CMakeFiles/apbs_pmgc.dir/mypdec.c.o CMakeFiles/apbs_pmgc.dir/newtond.c.o CMakeFiles/apbs_pmgc.dir/newdrvd.c.o CMakeFiles/apbs_pmgc.dir/powerd.c.o CMakeFiles/apbs_pmgc.dir/smoothd.c.o CMakeFiles/apbs_pmgc.dir/mgfasd.c.o |
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572 | :info:build [ 50%] Linking CXX static library ../../apbs/lib/libapbs_geoflow.a |
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582 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vmgrid.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vmgrid.c |
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583 | :info:build [ 53%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vopot.c.o |
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584 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vgrid.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vgrid.c |
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585 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vopot.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vopot.c |
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587 | :info:build [ 55%] Building C object src/mg/CMakeFiles/apbs_mg.dir/vpmgp.c.o |
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588 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vpmgp.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmgp.c |
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589 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/apbs_mg.dir/vpmg.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmg.c |
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590 | :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vgrid.c:229:13: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] |
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591 | :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { |
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592 | :info:build ~~~^ ~ |
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594 | :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { |
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596 | :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vgrid.c:229:37: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] |
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597 | :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { |
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598 | :info:build ~~~^ ~ |
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599 | :info:build 3 warnings generated. |
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601 | :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src/mg/vpmg.c:2927:25: warning: enumeration values 'VCM_PERMANENT', 'VCM_INDUCED', and 'VCM_NLINDUCED' not handled in switch [-Wswitch] |
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605 | :info:build switch (thee->chargeSrc) |
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606 | :info:build ^ |
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608 | :info:build switch (thee->chargeSrc) { |
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609 | :info:build ^ |
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610 | :info:build 3 warnings generated. |
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611 | :info:build [ 56%] Linking C static library ../../apbs/lib/libapbs_mg.a |
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612 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /opt/local/bin/cmake -P CMakeFiles/apbs_mg.dir/cmake_clean_target.cmake |
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613 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/src/mg && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/apbs_mg.dir/link.txt --verbose=ON |
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614 | :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ar cq ../../apbs/lib/libapbs_mg.a CMakeFiles/apbs_mg.dir/vgrid.c.o CMakeFiles/apbs_mg.dir/vmgrid.c.o CMakeFiles/apbs_mg.dir/vopot.c.o CMakeFiles/apbs_mg.dir/vpmg.c.o CMakeFiles/apbs_mg.dir/vpmgp.c.o |
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615 | :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ranlib ../../apbs/lib/libapbs_mg.a |
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617 | :info:build [ 56%] Built target apbs_mg |
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618 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/analysis.dir/build.make tools/mesh/CMakeFiles/analysis.dir/depend |
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623 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/dxmath.dir/build.make tools/mesh/CMakeFiles/dxmath.dir/depend |
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624 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx.dir/build.make tools/mesh/CMakeFiles/mergedx.dir/depend |
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628 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/analysis.dir/DependInfo.cmake --color= |
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630 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/benchmark.dir/DependInfo.cmake --color= |
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632 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/del2dx.dir/DependInfo.cmake --color= |
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634 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/dx2mol.dir/DependInfo.cmake --color= |
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635 | :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063' |
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636 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/dxmath.dir/DependInfo.cmake --color= |
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638 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake --color= |
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651 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/dx2uhbd.dir/depend.internal". |
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652 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". |
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653 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx.dir/depend.internal". |
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654 | :info:build [ 56%] Built target apbs_geoflow |
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655 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mergedx2.dir/build.make tools/mesh/CMakeFiles/mergedx2.dir/depend |
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657 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake --color= |
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658 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx2.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". |
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659 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mergedx2.dir/depend.internal". |
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660 | :info:build Scanning dependencies of target del2dx |
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665 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/del2dx.dir/del2dx.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh/del2dx.c |
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666 | :info:build [ 59%] Linking C executable ../../apbs/tools/bin/del2dx |
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667 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/del2dx.dir/link.txt --verbose=ON |
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668 | :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/del2dx.dir/del2dx.c.o -o ../../apbs/tools/bin/del2dx ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib |
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669 | :info:build Scanning dependencies of target benchmark |
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671 | :info:build Scanning dependencies of target dxmath |
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710 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/dx2mol.dir/dx2mol.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh/dx2mol.c |
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712 | :info:build [ 67%] Built target del2dx |
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713 | :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f tools/mesh/CMakeFiles/mgmesh.dir/build.make tools/mesh/CMakeFiles/mgmesh.dir/depend |
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715 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 && /opt/local/bin/cmake -E cmake_depends "Unix Makefiles" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063 /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake --color= |
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716 | :info:build [ 68%] Linking C executable ../../apbs/tools/bin/benchmark |
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717 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mgmesh.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". |
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718 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/mgmesh.dir/depend.internal". |
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719 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /opt/local/bin/cmake -E cmake_link_script CMakeFiles/benchmark.dir/link.txt --verbose=ON |
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720 | :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/benchmark.dir/benchmark.c.o -o ../../apbs/tools/bin/benchmark ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib |
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721 | :info:build [ 69%] Linking C executable ../../apbs/tools/bin/mergedx |
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723 | :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh/mergedx2.c:12:9: warning: 'MAX_INPUT' macro redefined [-Wmacro-redefined] |
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734 | :info:build ~~~^ ~ |
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736 | :info:build (ilo>=0) && (jlo>=0) && (klo>=0)) { |
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737 | :info:build ~~~^ ~ |
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738 | :info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -Wl,-search_paths_first -Wl,-headerpad_max_install_names -L/opt/local/lib -Wl,-headerpad_max_install_names -arch x86_64 CMakeFiles/mergedx.dir/mergedx.c.o -o ../../apbs/tools/bin/mergedx ../../apbs/lib/libapbs_generic.a ../../apbs/lib/libapbs_mg.a ../../apbs/lib/libapbs_pmgc.a ../../apbs/lib/libapbs_generic.a -L/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/lib -lapbs_geoflow -lmaloc -lm -Wl,-rpath,/opt/local/lib |
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739 | :info:build Scanning dependencies of target mgmesh |
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746 | :info:build [ 74%] Linking C executable ../../apbs/tools/bin/dxmath |
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814 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh/CMakeFiles/uhbd_asc2bin.dir/depend.internal". |
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817 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/born.dir/depend.internal". |
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818 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/coulomb.dir/DependInfo.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/coulomb.dir/depend.internal". |
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819 | :info:build Dependee "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/manip/CMakeFiles/coulomb.dir/depend.internal". |
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820 | :info:build Scanning dependencies of target tensor2dx |
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855 | :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/tools/mesh && /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/clang -std=c99 -DNDEBUG -arch x86_64 -mmacosx-version-min=10.10 -I/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/src -o CMakeFiles/value.dir/value.c.o -c /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_apbs/apbs/work/apbs-pdb2pqr-d4e78c62e6a07f92c26924318d83a159fa6af063/apbs/tools/mesh/value.c |
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