1 | ================================================================================ |
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2 | Starting Configure Run at Fri Apr 8 06:59:00 2016 |
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3 | Configure Options: --prefix=/opt/local --prefix=/opt/local/lib/slepc --with-arpack-dir=/opt/local --with-arpack-flags=-lparpack,-larpack |
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4 | Working directory: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/v3.6.2 |
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5 | Python version: |
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6 | 2.7.10 (default, Oct 23 2015, 19:19:21) |
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7 | [GCC 4.2.1 Compatible Apple LLVM 7.0.0 (clang-700.0.59.5)] |
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8 | make: /opt/local/bin/gmake |
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9 | PETSc source directory: /opt/local/lib/petsc |
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10 | PETSc install directory: /opt/local/lib/petsc |
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11 | PETSc version: 3.6.3 |
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12 | SLEPc source directory: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_slepc/slepc/work/v3.6.2 |
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13 | SLEPc install directory: /opt/local/lib/slepc |
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14 | SLEPc version: 3.6.2 |
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15 | ================================================================================ |
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16 | Checking PETSc installation... |
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17 | #include "petscksp.h" |
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18 | int main() { |
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19 | Vec v; Mat m; KSP k; |
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20 | PetscInitializeNoArguments(); |
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21 | VecCreate(PETSC_COMM_WORLD,&v); |
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22 | MatCreate(PETSC_COMM_WORLD,&m); |
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23 | KSPCreate(PETSC_COMM_WORLD,&k); |
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24 | return 0; |
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25 | } |
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26 | /opt/local/bin/mpicc-mpich-mp -o checklink.o -c -Os -arch x86_64 -fPIC -Os -I/opt/local/include -pipe -Os -arch x86_64 -I/opt/local/lib/petsc/include -I/opt/local/lib/petsc/include -I/opt/local/include -I/opt/local/include/mpich-mp -I/opt/local/include -I/opt/local/include `pwd`/checklink.c |
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27 | /opt/local/bin/mpicc-mpich-mp -L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Os -arch x86_64 -fPIC -Os -pipe -Os -arch x86_64 -o checklink checklink.o -Wl,-rpath,/opt/local/lib/petsc/lib -L/opt/local/lib/petsc/lib -lpetsc -Wl,-rpath,/opt/local/lib -L/opt/local/lib -lHYPRE -lml -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lscalapack -lumfpack -lklu -lcholmod -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lsundials_cvode -lsundials_nvecserial -lsundials_nvecparallel /System/Library/Frameworks/Accelerate.framework/Versions/Current/Accelerate -lparmetis -lmetis -lnetcdf -lhdf5_hl -lhdf5 -lhwloc -llcg -lssl -lcrypto -lyaml -ldl -Wl,-rpath,/opt/local/lib/mpich-mp -L/opt/local/lib/mpich-mp -lmpifort -lmpi -lpmpi -lgfortran -Wl,-rpath,/opt/local/lib/gcc5/gcc/x86_64-apple-darwin15/5.3.0 -L/opt/local/lib/gcc5/gcc/x86_64-apple-darwin15/5.3.0 -Wl,-rpath,/opt/local/lib/gcc5 -L/opt/local/lib/gcc5 -lgfortran -lSystem -lgcc_ext.10.5 -lquadmath -lm -ldl |
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28 | ld: warning: could not create compact unwind for ___cmumps_parallel_analysis_MOD_cmumps_ana_f_par: stack subq instruction is too different from dwarf stack size |
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29 | ld: warning: could not create compact unwind for ___dmumps_parallel_analysis_MOD_dmumps_ana_f_par: stack subq instruction is too different from dwarf stack size |
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30 | ld: warning: could not create compact unwind for ___smumps_parallel_analysis_MOD_smumps_ana_f_par: stack subq instruction is too different from dwarf stack size |
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31 | ld: warning: could not create compact unwind for ___zmumps_parallel_analysis_MOD_zmumps_ana_f_par: stack subq instruction is too different from dwarf stack size |
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32 | Undefined symbols for architecture x86_64: |
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33 | "_get_rn_dbl_simple_mpi", referenced from: |
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34 | import-atom in libpetsc.dylib |
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35 | "_init_rng_simple_mpi", referenced from: |
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36 | import-atom in libpetsc.dylib |
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37 | ld: symbol(s) not found for architecture x86_64 |
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38 | clang: error: linker command failed with exit code 1 (use -v to see invocation) |
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39 | makefile:2: recipe for target 'checklink' failed |
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40 | gmake: *** [checklink] Error 1 |
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41 | |
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42 | ERROR: Unable to link with PETSc |
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