Ticket #54139: main.log

File main.log, 42.6 KB (added by mf2k (Frank Schima), 8 years ago)
Line 
1version:1
2:msg:main --->  Computing dependencies for hdf5:info:main .:debug:main hdf5 has no conflicts
3:debug:main Searching for dependency: gcc6
4:debug:main Found Dependency: receipt exists for gcc6
5:debug:main Searching for dependency: zlib
6:debug:main Found Dependency: receipt exists for zlib
7:debug:main Searching for dependency: libgcc
8:debug:main Found Dependency: receipt exists for libgcc
9:debug:main Executing org.macports.main (hdf5)
10:debug:main dropping privileges: euid changed to 503, egid changed to 501.
11:debug:archivefetch archivefetch phase started at Wed May 10 15:28:29 MDT 2017
12:msg:archivefetch --->  Fetching archive for hdf5
13:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
14:debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run: zlib libgcc
15:debug:archivefetch Executing org.macports.archivefetch (hdf5)
16:debug:archivefetch euid/egid changed to: 0/0
17:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
18:debug:archivefetch euid/egid changed to: 503/501
19:info:archivefetch --->  hdf5-1.10.1_0+cxx+gcc6+hl.darwin_16.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
20:msg:archivefetch --->  Attempting to fetch hdf5-1.10.1_0+cxx+gcc6+hl.darwin_16.x86_64.tbz2 from https://packages.macports.org/hdf5
21:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
22:msg:archivefetch --->  Attempting to fetch hdf5-1.10.1_0+cxx+gcc6+hl.darwin_16.x86_64.tbz2 from http://sea.us.packages.macports.org/macports/packages/hdf5
23:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
24:msg:archivefetch --->  Attempting to fetch hdf5-1.10.1_0+cxx+gcc6+hl.darwin_16.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/hdf5
25:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
26:debug:archivefetch Privilege de-escalation not attempted as not running as root.
27:debug:fetch fetch phase started at Wed May 10 15:28:32 MDT 2017
28:notice:fetch --->  Fetching distfiles for hdf5
29:debug:fetch elevating privileges for fetch: euid changed to 0, egid changed to 0.
30:debug:fetch dropping privileges: euid changed to 503, egid changed to 501.
31:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
32:debug:fetch compilers.enforce_c list:
33:debug:fetch compilers.enforce_fortran list:
34:debug:fetch compilers.enforce_some_fortran list:
35:debug:fetch Executing proc-pre-org.macports.fetch-fetch-1
36:debug:fetch Executing proc-pre-org.macports.fetch-fetch-2
37:debug:fetch mpi.enforce_variant list:
38:debug:fetch Executing org.macports.fetch (hdf5)
39:info:fetch --->  hdf5-1.10.1.tar.bz2 does not exist in /opt/local/var/macports/distfiles/hdf5
40:notice:fetch --->  Attempting to fetch hdf5-1.10.1.tar.bz2 from https://distfiles.macports.org/hdf5
41:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
42:notice:fetch --->  Attempting to fetch hdf5-1.10.1.tar.bz2 from http://sea.us.distfiles.macports.org/macports/distfiles/hdf5
43:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
44:notice:fetch --->  Attempting to fetch hdf5-1.10.1.tar.bz2 from http://ykf.ca.distfiles.macports.org/MacPorts/mpdistfiles/hdf5
45:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
46:notice:fetch --->  Attempting to fetch hdf5-1.10.1.tar.bz2 from http://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.1/src
47:debug:fetch Privilege de-escalation not attempted as not running as root.
48:debug:checksum checksum phase started at Wed May 10 15:28:43 MDT 2017
49:notice:checksum --->  Verifying checksums for hdf5
50:debug:checksum Executing org.macports.checksum (hdf5)
51:info:checksum --->  Checksumming hdf5-1.10.1.tar.bz2
52:debug:checksum Calculated (rmd160) is 759e63ead405740dcf3260bdc9644b97480f3b8b
53:debug:checksum Correct (rmd160) checksum for hdf5-1.10.1.tar.bz2
54:debug:checksum Calculated (sha256) is 9c5ce1e33d2463fb1a42dd04daacbc22104e57676e2204e3d66b1ef54b88ebf2
55:debug:checksum Correct (sha256) checksum for hdf5-1.10.1.tar.bz2
56:debug:checksum Privilege de-escalation not attempted as not running as root.
57:debug:extract extract phase started at Wed May 10 15:28:43 MDT 2017
58:notice:extract --->  Extracting hdf5
59:debug:extract setting option extract.cmd to /usr/bin/bzip2
60:debug:extract Executing org.macports.extract (hdf5)
61:info:extract --->  Extracting hdf5-1.10.1.tar.bz2
62:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/hdf5/hdf5-1.10.1.tar.bz2'
63:debug:extract Environment:
64:debug:extract CC_PRINT_OPTIONS='YES'
65:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work/.CC_PRINT_OPTIONS'
66:debug:extract CPATH='/opt/local/include'
67:debug:extract LIBRARY_PATH='/opt/local/lib'
68:debug:extract MACOSX_DEPLOYMENT_TARGET='10.12'
69:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/hdf5/hdf5-1.10.1.tar.bz2' | /usr/bin/tar -xf -
70:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/hdf5/hdf5-1.10.1.tar.bz2' | /usr/bin/tar -xf -
71:debug:extract euid/egid changed to: 0/0
72:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work to macports
73:debug:extract euid/egid changed to: 503/501
74:debug:extract Privilege de-escalation not attempted as not running as root.
75:debug:patch patch phase started at Wed May 10 15:28:46 MDT 2017
76:debug:patch Executing org.macports.patch (hdf5)
77:debug:patch Privilege de-escalation not attempted as not running as root.
78:debug:configure configure phase started at Wed May 10 15:28:46 MDT 2017
79:notice:configure --->  Configuring hdf5
80:debug:configure Preferred compilers: clang macports-clang-4.0 macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
81:debug:configure Using compiler 'Xcode Clang'
82:debug:configure Executing proc-pre-org.macports.configure-configure-0
83:debug:configure Executing proc-pre-org.macports.configure-configure-1
84:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: zlib libgcc gcc6
85:debug:configure Executing org.macports.configure (hdf5)
86:debug:configure Environment:
87:debug:configure CC='/opt/local/bin/gcc-mp-6'
88:debug:configure CC_PRINT_OPTIONS='YES'
89:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work/.CC_PRINT_OPTIONS'
90:debug:configure CFLAGS='-pipe -Os'
91:debug:configure CPATH='/opt/local/include'
92:debug:configure CPPFLAGS='-I/opt/local/include'
93:debug:configure CXX='/opt/local/bin/g++-mp-6'
94:debug:configure CXXFLAGS='-pipe -Os'
95:debug:configure F77='/opt/local/bin/gfortran-mp-6'
96:debug:configure F90='/opt/local/bin/gfortran-mp-6'
97:debug:configure F90FLAGS='-pipe -Os'
98:debug:configure FC='/opt/local/bin/gfortran-mp-6'
99:debug:configure FCFLAGS='-pipe -Os'
100:debug:configure FFLAGS='-pipe -Os'
101:debug:configure INSTALL='/usr/bin/install -c'
102:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
103:debug:configure LIBRARY_PATH='/opt/local/lib'
104:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
105:debug:configure OBJC='/opt/local/bin/gcc-mp-6'
106:debug:configure OBJCFLAGS='-pipe -Os'
107:debug:configure OBJCXX='/usr/bin/clang++'
108:debug:configure OBJCXXFLAGS='-pipe -Os -arch x86_64'
109:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work/hdf5-1.10.1" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --disable-fortran --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx
110:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work/hdf5-1.10.1" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --disable-fortran --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx
111:info:configure checking for a BSD-compatible install... /usr/bin/install -c
112:info:configure checking whether build environment is sane... yes
113:info:configure checking for a thread-safe mkdir -p... /opt/local/bin/gmkdir -p
114:info:configure checking for gawk... gawk
115:info:configure checking whether make sets $(MAKE)... yes
116:info:configure checking whether make supports nested variables... yes
117:info:configure checking whether make supports nested variables... (cached) yes
118:info:configure checking whether to enable maintainer-specific portions of Makefiles... no
119:info:configure checking build system type... x86_64-apple-darwin16.5.0
120:info:configure checking host system type... x86_64-apple-darwin16.5.0
121:info:configure checking shell variables initial values... done
122:info:configure checking if basename works... yes
123:info:configure checking if xargs works... yes
124:info:configure checking for cached host... none
125:info:configure checking for config x86_64-apple-darwin16.5.0... no
126:info:configure checking for config x86_64-apple-darwin16.5.0... no
127:info:configure checking for config apple-darwin16.5.0... no
128:info:configure checking for config apple-darwin16.5.0... no
129:info:configure checking for config x86_64-darwin16.5.0... no
130:info:configure checking for config x86_64-darwin16.5.0... no
131:info:configure checking for config x86_64-apple... no
132:info:configure checking for config darwin16.5.0... no
133:info:configure checking for config darwin16.5.0... no
134:info:configure checking for config apple... found
135:info:configure compiler '/opt/local/bin/gcc-mp-6' is GNU gcc-6.3.0
136:info:configure compiler '/opt/local/bin/gfortran-mp-6' is GNU gfortran-6.3.0
137:info:configure checking for config ./config/site-specific/host-670fsmac... no
138:info:configure checking build mode... production
139:info:configure checking for gcc... /opt/local/bin/gcc-mp-6
140:info:configure checking whether the C compiler works... yes
141:info:configure checking for C compiler default output file name... a.out
142:info:configure checking for suffix of executables...
143:info:configure checking whether we are cross compiling... no
144:info:configure checking for suffix of object files... o
145:info:configure checking whether we are using the GNU C compiler... yes
146:info:configure checking whether /opt/local/bin/gcc-mp-6 accepts -g... yes
147:info:configure checking for /opt/local/bin/gcc-mp-6 option to accept ISO C89... none needed
148:info:configure checking whether /opt/local/bin/gcc-mp-6 understands -c and -o together... yes
149:info:configure checking for style of include used by make... GNU
150:info:configure checking dependency style of /opt/local/bin/gcc-mp-6... gcc3
151:info:configure checking if unsupported combinations of configure options are allowed... no
152:info:configure checking how to run the C preprocessor... /opt/local/bin/gcc-mp-6 -E
153:info:configure checking for grep that handles long lines and -e... /opt/local/bin/grep
154:info:configure checking for egrep... /opt/local/bin/grep -E
155:info:configure checking for ANSI C header files... yes
156:info:configure checking for sys/types.h... yes
157:info:configure checking for sys/stat.h... yes
158:info:configure checking for stdlib.h... yes
159:info:configure checking for string.h... yes
160:info:configure checking for memory.h... yes
161:info:configure checking for strings.h... yes
162:info:configure checking for inttypes.h... yes
163:info:configure checking for stdint.h... yes
164:info:configure checking for unistd.h... yes
165:info:configure checking for off_t... yes
166:info:configure checking for size_t... yes
167:info:configure checking for ssize_t... yes
168:info:configure checking for ptrdiff_t... yes
169:info:configure checking whether byte ordering is bigendian... no
170:info:configure checking size of char... 1
171:info:configure checking size of short... 2
172:info:configure checking size of int... 4
173:info:configure checking size of unsigned... 4
174:info:configure checking size of long... 8
175:info:configure checking size of long long... 8
176:info:configure checking size of __int64... 0
177:info:configure checking size of float... 4
178:info:configure checking size of double... 8
179:info:configure checking size of long double... 16
180:info:configure checking size of __float128... 16
181:info:configure checking size of _Quad... 0
182:info:configure checking quadmath.h usability... yes
183:info:configure checking quadmath.h presence... yes
184:info:configure checking for quadmath.h... yes
185:info:configure checking maximum decimal precision for C... 33
186:info:configure checking if Fortran interface enabled... no
187:info:configure checking whether we are using the GNU C++ compiler... yes
188:info:configure checking whether /opt/local/bin/g++-mp-6 accepts -g... yes
189:info:configure checking dependency style of /opt/local/bin/g++-mp-6... gcc3
190:info:configure checking how to run the C++ preprocessor... /opt/local/bin/g++-mp-6 -E
191:info:configure checking if c++ interface enabled... yes
192:info:configure checking if /opt/local/bin/g++-mp-6 needs old style header files in includes... no
193:info:configure checking if /opt/local/bin/g++-mp-6 can handle namespaces... yes
194:info:configure checking if /opt/local/bin/g++-mp-6 can handle static cast... yes
195:info:configure checking if /opt/local/bin/g++-mp-6 has offsetof extension... yes
196:info:configure checking if the high-level library is enabled... yes
197:info:configure checking for ar... ar
198:info:configure checking whether make sets $(MAKE)... (cached) yes
199:info:configure checking for tr... /usr/bin/tr
200:info:configure checking if srcdir= and time commands work together... yes
201:info:configure checking if Java JNI interface enabled... no
202:info:configure checking how to print strings... printf
203:info:configure checking for a sed that does not truncate output... /opt/local/bin/gsed
204:info:configure checking for fgrep... /opt/local/bin/grep -F
205:info:configure checking for ld used by /opt/local/bin/gcc-mp-6... /opt/local/bin/ld
206:info:configure checking if the linker (/opt/local/bin/ld) is GNU ld... no
207:info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm -B
208:info:configure checking the name lister (/opt/local/bin/nm -B) interface... BSD nm
209:info:configure checking whether ln -s works... yes
210:info:configure checking the maximum length of command line arguments... 196608
211:info:configure checking how to convert x86_64-apple-darwin16.5.0 file names to x86_64-apple-darwin16.5.0 format... func_convert_file_noop
212:info:configure checking how to convert x86_64-apple-darwin16.5.0 file names to toolchain format... func_convert_file_noop
213:info:configure checking for /opt/local/bin/ld option to reload object files... -r
214:info:configure checking for objdump... objdump
215:info:configure checking how to recognize dependent libraries... pass_all
216:info:configure checking for dlltool... no
217:info:configure checking how to associate runtime and link libraries... printf %s\n
218:info:configure checking for archiver @FILE support... no
219:info:configure checking for strip... strip
220:info:configure checking for ranlib... ranlib
221:info:configure checking command to parse /opt/local/bin/nm -B output from /opt/local/bin/gcc-mp-6 object... ok
222:info:configure checking for sysroot... no
223:info:configure checking for a working dd... /bin/dd
224:info:configure checking how to truncate binary pipes... /bin/dd bs=4096 count=1
225:info:configure checking for mt... no
226:info:configure checking if : is a manifest tool... no
227:info:configure checking for dsymutil... dsymutil
228:info:configure checking for nmedit... nmedit
229:info:configure checking for lipo... lipo
230:info:configure checking for otool... otool
231:info:configure checking for otool64... no
232:info:configure checking for -single_module linker flag... yes
233:info:configure checking for -exported_symbols_list linker flag... yes
234:info:configure checking for -force_load linker flag... yes
235:info:configure checking for dlfcn.h... yes
236:info:configure checking for objdir... .libs
237:info:configure checking if /opt/local/bin/gcc-mp-6 supports -fno-rtti -fno-exceptions... no
238:info:configure checking for /opt/local/bin/gcc-mp-6 option to produce PIC... -fno-common -DPIC
239:info:configure checking if /opt/local/bin/gcc-mp-6 PIC flag -fno-common -DPIC works... yes
240:info:configure checking if /opt/local/bin/gcc-mp-6 static flag -static works... no
241:info:configure checking if /opt/local/bin/gcc-mp-6 supports -c -o file.o... yes
242:info:configure checking if /opt/local/bin/gcc-mp-6 supports -c -o file.o... (cached) yes
243:info:configure checking whether the /opt/local/bin/gcc-mp-6 linker (/opt/local/bin/ld) supports shared libraries... yes
244:info:configure checking dynamic linker characteristics... darwin16.5.0 dyld
245:info:configure checking how to hardcode library paths into programs... immediate
246:info:configure checking for dlopen in -ldl... yes
247:info:configure checking whether a program can dlopen itself... yes
248:info:configure checking whether a statically linked program can dlopen itself... yes
249:info:configure checking whether stripping libraries is possible... yes
250:info:configure checking if libtool supports shared libraries... yes
251:info:configure checking whether to build shared libraries... yes
252:info:configure checking whether to build static libraries... yes
253:info:configure checking how to run the C++ preprocessor... /opt/local/bin/g++-mp-6 -E
254:info:configure checking for ld used by /opt/local/bin/g++-mp-6... /opt/local/bin/ld
255:info:configure checking if the linker (/opt/local/bin/ld) is GNU ld... no
256:info:configure checking whether the /opt/local/bin/g++-mp-6 linker (/opt/local/bin/ld) supports shared libraries... yes
257:info:configure checking for /opt/local/bin/g++-mp-6 option to produce PIC... -fno-common -DPIC
258:info:configure checking if /opt/local/bin/g++-mp-6 PIC flag -fno-common -DPIC works... yes
259:info:configure checking if /opt/local/bin/g++-mp-6 static flag -static works... no
260:info:configure checking if /opt/local/bin/g++-mp-6 supports -c -o file.o... yes
261:info:configure checking if /opt/local/bin/g++-mp-6 supports -c -o file.o... (cached) yes
262:info:configure checking whether the /opt/local/bin/g++-mp-6 linker (/opt/local/bin/ld) supports shared libraries... yes
263:info:configure checking dynamic linker characteristics... darwin16.5.0 dyld
264:info:configure checking how to hardcode library paths into programs... immediate
265:info:configure checking if we should install only statically linked executables... no
266:info:configure checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes
267:info:configure checking for ceil in -lm... yes
268:info:configure checking for dlopen in -ldl... (cached) yes
269:info:configure checking for ANSI C header files... (cached) yes
270:info:configure checking whether time.h and sys/time.h may both be included... yes
271:info:configure checking sys/resource.h usability... yes
272:info:configure checking sys/resource.h presence... yes
273:info:configure checking for sys/resource.h... yes
274:info:configure checking sys/time.h usability... yes
275:info:configure checking sys/time.h presence... yes
276:info:configure checking for sys/time.h... yes
277:info:configure checking for unistd.h... (cached) yes
278:info:configure checking sys/ioctl.h usability... yes
279:info:configure checking sys/ioctl.h presence... yes
280:info:configure checking for sys/ioctl.h... yes
281:info:configure checking for sys/stat.h... (cached) yes
282:info:configure checking sys/socket.h usability... yes
283:info:configure checking sys/socket.h presence... yes
284:info:configure checking for sys/socket.h... yes
285:info:configure checking for sys/types.h... (cached) yes
286:info:configure checking sys/file.h usability... yes
287:info:configure checking sys/file.h presence... yes
288:info:configure checking for sys/file.h... yes
289:info:configure checking stddef.h usability... yes
290:info:configure checking stddef.h presence... yes
291:info:configure checking for stddef.h... yes
292:info:configure checking setjmp.h usability... yes
293:info:configure checking setjmp.h presence... yes
294:info:configure checking for setjmp.h... yes
295:info:configure checking features.h usability... no
296:info:configure checking features.h presence... no
297:info:configure checking for features.h... no
298:info:configure checking dirent.h usability... yes
299:info:configure checking dirent.h presence... yes
300:info:configure checking for dirent.h... yes
301:info:configure checking for stdint.h... (cached) yes
302:info:configure checking stdbool.h usability... yes
303:info:configure checking stdbool.h presence... yes
304:info:configure checking for stdbool.h... yes
305:info:configure checking mach/mach_time.h usability... yes
306:info:configure checking mach/mach_time.h presence... yes
307:info:configure checking for mach/mach_time.h... yes
308:info:configure checking io.h usability... no
309:info:configure checking io.h presence... no
310:info:configure checking for io.h... no
311:info:configure checking winsock2.h usability... no
312:info:configure checking winsock2.h presence... no
313:info:configure checking for winsock2.h... no
314:info:configure checking sys/timeb.h usability... yes
315:info:configure checking sys/timeb.h presence... yes
316:info:configure checking for sys/timeb.h... yes
317:info:configure checking if libtool needs -no-undefined flag to build shared libraries... no
318:info:configure checking for _FILE_OFFSET_BITS value needed for large files... no
319:info:configure checking size of int8_t... 1
320:info:configure checking size of uint8_t... 1
321:info:configure checking size of int_least8_t... 1
322:info:configure checking size of uint_least8_t... 1
323:info:configure checking size of int_fast8_t... 1
324:info:configure checking size of uint_fast8_t... 1
325:info:configure checking size of int16_t... 2
326:info:configure checking size of uint16_t... 2
327:info:configure checking size of int_least16_t... 2
328:info:configure checking size of uint_least16_t... 2
329:info:configure checking size of int_fast16_t... 2
330:info:configure checking size of uint_fast16_t... 2
331:info:configure checking size of int32_t... 4
332:info:configure checking size of uint32_t... 4
333:info:configure checking size of int_least32_t... 4
334:info:configure checking size of uint_least32_t... 4
335:info:configure checking size of int_fast32_t... 4
336:info:configure checking size of uint_fast32_t... 4
337:info:configure checking size of int64_t... 8
338:info:configure checking size of uint64_t... 8
339:info:configure checking size of int_least64_t... 8
340:info:configure checking size of uint_least64_t... 8
341:info:configure checking size of int_fast64_t... 8
342:info:configure checking size of uint_fast64_t... 8
343:info:configure checking size of size_t... 8
344:info:configure checking size of ssize_t... 8
345:info:configure checking size of ptrdiff_t... 8
346:info:configure checking size of off_t... 8
347:info:configure checking size of bool... 1
348:info:configure checking if dev_t is scalar... yes
349:info:configure checking for dmalloc library... suppressed
350:info:configure checking zlib.h usability... yes
351:info:configure checking zlib.h presence... yes
352:info:configure checking for zlib.h... yes
353:info:configure checking for compress2 in -lz... yes
354:info:configure checking for compress2... yes
355:info:configure checking for szlib... suppressed
356:info:configure checking for thread safe support... no
357:info:configure checking whether CLOCK_MONOTONIC is declared... yes
358:info:configure checking for tm_gmtoff in struct tm... yes
359:info:configure checking for global timezone variable... yes
360:info:configure checking for st_blocks in struct stat... no
361:info:configure checking for _getvideoconfig... no
362:info:configure checking for gettextinfo... no
363:info:configure checking for GetConsoleScreenBufferInfo... no
364:info:configure checking for getpwuid... yes
365:info:configure checking for _scrsize... no
366:info:configure checking for ioctl... yes
367:info:configure checking for struct videoconfig... no
368:info:configure checking for struct text_info... no
369:info:configure checking for TIOCGWINSZ... yes
370:info:configure checking for TIOCGETD... yes
371:info:configure checking for library containing clock_gettime... none required
372:info:configure checking for alarm... yes
373:info:configure checking for clock_gettime... yes
374:info:configure checking for difftime... yes
375:info:configure checking for fcntl... yes
376:info:configure checking for flock... yes
377:info:configure checking for fork... yes
378:info:configure checking for frexpf... yes
379:info:configure checking for frexpl... yes
380:info:configure checking for gethostname... yes
381:info:configure checking for getrusage... yes
382:info:configure checking for gettimeofday... yes
383:info:configure checking for lstat... yes
384:info:configure checking for rand_r... yes
385:info:configure checking for random... yes
386:info:configure checking for setsysinfo... no
387:info:configure checking for signal... yes
388:info:configure checking for longjmp... yes
389:info:configure checking for setjmp... yes
390:info:configure checking for siglongjmp... yes
391:info:configure checking for sigsetjmp... yes
392:info:configure checking for sigprocmask... yes
393:info:configure checking for snprintf... yes
394:info:configure checking for srandom... yes
395:info:configure checking for strdup... yes
396:info:configure checking for symlink... yes
397:info:configure checking for system... yes
398:info:configure checking for strtoll... yes
399:info:configure checking for strtoull... yes
400:info:configure checking for tmpfile... yes
401:info:configure checking for asprintf... yes
402:info:configure checking for vasprintf... yes
403:info:configure checking for vsnprintf... yes
404:info:configure checking for waitpid... yes
405:info:configure checking for roundf... yes
406:info:configure checking for lroundf... yes
407:info:configure checking for llroundf... yes
408:info:configure checking for round... yes
409:info:configure checking for lround... yes
410:info:configure checking for llround... yes
411:info:configure checking for an ANSI C-conforming const... yes
412:info:configure checking if the compiler understands  __inline__... yes
413:info:configure checking if the compiler understands __inline... yes
414:info:configure checking if the compiler understands inline... yes
415:info:configure checking for __attribute__ extension... yes
416:info:configure checking for __func__ extension... yes
417:info:configure checking for __FUNCTION__ extension... yes
418:info:configure checking for C99 designated initialization support... yes
419:info:configure checking how to print long long... %ld and %lu
420:info:configure checking enable debugging symbols... no
421:info:configure checking enable asserts... no
422:info:configure checking enable developer warnings... no
423:info:configure checking profiling... no
424:info:configure checking optimization level... high
425:info:configure checking for internal debug output... none
426:info:configure checking whether function stack tracking is enabled... no
427:info:configure checking whether metadata trace file code is enabled... no
428:info:configure checking for API tracing... no
429:info:configure checking whether a memory checking tool will be used... no
430:info:configure checking whether internal memory allocation sanity checking is used... no
431:info:configure checking for parallel support files... skipped
432:info:configure checking whether O_DIRECT is declared... no
433:info:configure checking for posix_memalign... yes
434:info:configure checking if the direct I/O virtual file driver (VFD) is enabled... no
435:info:configure checking for custom plugin default path definition... /opt/local/lib/hdf5
436:info:configure checking whether exception handling functions is checked during data conversions... yes
437:info:configure checking whether data accuracy is guaranteed during data conversions... yes
438:info:configure checking if the machine has window style path name... no
439:info:configure checking if using special algorithm to convert long double to (unsigned) long values... no
440:info:configure checking if using special algorithm to convert (unsigned) long to long double values... no
441:info:configure checking if correctly converting long double to (unsigned) long long values... yes
442:info:configure checking if correctly converting (unsigned) long long to long double values... yes
443:info:configure checking additional programs should be built... no
444:info:configure checking if deprecated public symbols are available... yes
445:info:configure checking which version of public symbols to use by default... v110
446:info:configure checking whether to perform strict file format checks... no
447:info:configure checking whether to have library information embedded in the executables... yes
448:info:configure checking if alignment restrictions are strictly enforced... no
449:info:configure configure: creating ./config.lt
450:info:configure config.lt: creating libtool
451:info:configure checking that generated files are newer than configure... done
452:info:configure configure: creating ./config.status
453:info:configure config.status: creating src/libhdf5.settings
454:info:configure config.status: creating Makefile
455:info:configure config.status: creating src/Makefile
456:info:configure config.status: creating test/Makefile
457:info:configure config.status: creating test/testcheck_version.sh
458:info:configure config.status: creating test/testerror.sh
459:info:configure config.status: creating test/testflushrefresh.sh
460:info:configure config.status: creating test/H5srcdir_str.h
461:info:configure config.status: creating test/testlibinfo.sh
462:info:configure config.status: creating test/testlinks_env.sh
463:info:configure config.status: creating test/testswmr.sh
464:info:configure config.status: creating test/test_plugin.sh
465:info:configure config.status: creating test/test_usecases.sh
466:info:configure config.status: creating test/testvdsswmr.sh
467:info:configure config.status: creating testpar/Makefile
468:info:configure config.status: creating tools/Makefile
469:info:configure config.status: creating tools/lib/Makefile
470:info:configure config.status: creating tools/src/Makefile
471:info:configure config.status: creating tools/src/h5dump/Makefile
472:info:configure config.status: creating tools/src/h5import/Makefile
473:info:configure config.status: creating tools/src/h5diff/Makefile
474:info:configure config.status: creating tools/src/h5jam/Makefile
475:info:configure config.status: creating tools/src/h5repack/Makefile
476:info:configure config.status: creating tools/src/h5ls/Makefile
477:info:configure config.status: creating tools/src/h5copy/Makefile
478:info:configure config.status: creating tools/src/misc/Makefile
479:info:configure config.status: creating tools/src/misc/h5cc
480:info:configure config.status: creating tools/src/h5stat/Makefile
481:info:configure config.status: creating tools/test/Makefile
482:info:configure config.status: creating tools/test/h5dump/Makefile
483:info:configure config.status: creating tools/test/h5dump/h5dump_plugin.sh
484:info:configure config.status: creating tools/test/h5dump/testh5dump.sh
485:info:configure config.status: creating tools/test/h5dump/testh5dumppbits.sh
486:info:configure config.status: creating tools/test/h5dump/testh5dumpvds.sh
487:info:configure config.status: creating tools/test/h5dump/testh5dumpxml.sh
488:info:configure config.status: creating tools/test/h5ls/Makefile
489:info:configure config.status: creating tools/test/h5ls/h5ls_plugin.sh
490:info:configure config.status: creating tools/test/h5ls/testh5ls.sh
491:info:configure config.status: creating tools/test/h5ls/testh5lsvds.sh
492:info:configure config.status: creating tools/test/h5import/Makefile
493:info:configure config.status: creating tools/test/h5import/h5importtestutil.sh
494:info:configure config.status: creating tools/test/h5diff/Makefile
495:info:configure config.status: creating tools/test/h5diff/h5diff_plugin.sh
496:info:configure config.status: creating tools/test/h5diff/testh5diff.sh
497:info:configure config.status: creating tools/test/h5diff/testph5diff.sh
498:info:configure config.status: creating tools/src/h5format_convert/Makefile
499:info:configure config.status: creating tools/test/h5format_convert/Makefile
500:info:configure config.status: creating tools/test/h5format_convert/testh5fc.sh
501:info:configure config.status: creating tools/test/h5jam/Makefile
502:info:configure config.status: creating tools/test/h5jam/testh5jam.sh
503:info:configure config.status: creating tools/test/h5repack/Makefile
504:info:configure config.status: creating tools/test/h5repack/h5repack.sh
505:info:configure config.status: creating tools/test/h5repack/h5repack_plugin.sh
506:info:configure config.status: creating tools/test/h5copy/Makefile
507:info:configure config.status: creating tools/test/h5copy/testh5copy.sh
508:info:configure config.status: creating tools/test/misc/Makefile
509:info:configure config.status: creating tools/test/misc/testh5clear.sh
510:info:configure config.status: creating tools/test/misc/testh5mkgrp.sh
511:info:configure config.status: creating tools/test/misc/testh5repart.sh
512:info:configure config.status: creating tools/test/misc/vds/Makefile
513:info:configure config.status: creating tools/test/h5stat/Makefile
514:info:configure config.status: creating tools/test/h5stat/testh5stat.sh
515:info:configure config.status: creating tools/test/perform/Makefile
516:info:configure config.status: creating examples/Makefile
517:info:configure config.status: creating examples/run-c-ex.sh
518:info:configure config.status: creating examples/testh5cc.sh
519:info:configure config.status: creating c++/Makefile
520:info:configure config.status: creating c++/src/Makefile
521:info:configure config.status: creating c++/src/h5c++
522:info:configure config.status: creating c++/test/Makefile
523:info:configure config.status: creating c++/test/H5srcdir_str.h
524:info:configure config.status: creating c++/examples/Makefile
525:info:configure config.status: creating c++/examples/run-c++-ex.sh
526:info:configure config.status: creating c++/examples/testh5c++.sh
527:info:configure config.status: creating fortran/Makefile
528:info:configure config.status: creating fortran/src/h5fc
529:info:configure config.status: creating fortran/src/Makefile
530:info:configure config.status: creating fortran/src/H5fort_type_defines.h
531:info:configure config.status: creating fortran/test/Makefile
532:info:configure config.status: creating fortran/testpar/Makefile
533:info:configure config.status: creating fortran/examples/Makefile
534:info:configure config.status: creating fortran/examples/run-fortran-ex.sh
535:info:configure config.status: creating fortran/examples/testh5fc.sh
536:info:configure config.status: creating java/Makefile
537:info:configure config.status: creating java/src/Makefile
538:info:configure config.status: creating java/src/jni/Makefile
539:info:configure config.status: creating java/test/Makefile
540:info:configure config.status: creating java/test/junit.sh
541:info:configure config.status: creating java/examples/Makefile
542:info:configure config.status: creating java/examples/intro/Makefile
543:info:configure config.status: creating java/examples/intro/runExample.sh
544:info:configure config.status: creating java/examples/datasets/Makefile
545:info:configure config.status: creating java/examples/datasets/runExample.sh
546:info:configure config.status: creating java/examples/datatypes/Makefile
547:info:configure config.status: creating java/examples/datatypes/runExample.sh
548:info:configure config.status: creating java/examples/groups/Makefile
549:info:configure config.status: creating java/examples/groups/runExample.sh
550:info:configure config.status: creating hl/Makefile
551:info:configure config.status: creating hl/src/Makefile
552:info:configure config.status: creating hl/test/Makefile
553:info:configure config.status: creating hl/test/H5srcdir_str.h
554:info:configure config.status: creating hl/tools/Makefile
555:info:configure config.status: creating hl/tools/gif2h5/Makefile
556:info:configure config.status: creating hl/tools/gif2h5/h52giftest.sh
557:info:configure config.status: creating hl/tools/h5watch/Makefile
558:info:configure config.status: creating hl/tools/h5watch/testh5watch.sh
559:info:configure config.status: creating hl/examples/Makefile
560:info:configure config.status: creating hl/examples/run-hlc-ex.sh
561:info:configure config.status: creating hl/c++/Makefile
562:info:configure config.status: creating hl/c++/src/Makefile
563:info:configure config.status: creating hl/c++/test/Makefile
564:info:configure config.status: creating hl/c++/examples/Makefile
565:info:configure config.status: creating hl/c++/examples/run-hlc++-ex.sh
566:info:configure config.status: creating hl/fortran/Makefile
567:info:configure config.status: creating hl/fortran/src/Makefile
568:info:configure config.status: creating hl/fortran/test/Makefile
569:info:configure config.status: creating hl/fortran/examples/Makefile
570:info:configure config.status: creating hl/fortran/examples/run-hlfortran-ex.sh
571:info:configure config.status: creating src/H5config.h
572:info:configure config.status: executing pubconf commands
573:info:configure creating src/H5pubconf.h
574:info:configure Post process src/libhdf5.settings
575:info:configure config.status: executing depfiles commands
576:info:configure config.status: executing libtool commands
577:info:configure config.status: executing .classes commands
578:info:configure sed: -i may not be used with stdin
579:info:configure             SUMMARY OF THE HDF5 CONFIGURATION
580:info:configure             =================================
581:info:configure General Information:
582:info:configure -------------------
583:info:configure                    HDF5 Version: 1.10.1
584:info:configure                   Configured on: Wed May 10 15:29:09 MDT 2017
585:info:configure                   Configured by: macports@670fsmac
586:info:configure                     Host system: x86_64-apple-darwin16.5.0
587:info:configure               Uname information: Darwin 670fsmac 16.5.0 Darwin Kernel Version 16.5.0: Fri Mar  3 16:52:33 PST 2017; root:xnu-3789.51.2~3/RELEASE_X86_64 x86_64
588:info:configure                        Byte sex: little-endian
589:info:configure              Installation point: /opt/local
590:info:configure Compiling Options:
591:info:configure ------------------
592:info:configure                      Build Mode: production
593:info:configure               Debugging Symbols: no
594:info:configure                         Asserts: no
595:info:configure                       Profiling: no
596:info:configure              Optimization Level: high
597:info:configure Linking Options:
598:info:configure ----------------
599:info:configure                       Libraries: static, shared
600:info:configure   Statically Linked Executables:
601:info:configure                         LDFLAGS: -L/opt/local/lib -Wl,-headerpad_max_install_names
602:info:configure                      H5_LDFLAGS:
603:info:configure                      AM_LDFLAGS:
604:info:configure                 Extra libraries: -lz -ldl -lm
605:info:configure                        Archiver: ar
606:info:configure                          Ranlib: ranlib
607:info:configure Languages:
608:info:configure ----------
609:info:configure                               C: yes
610:info:configure                      C Compiler: /opt/local/bin/gcc-mp-6
611:info:configure                        CPPFLAGS: -I/opt/local/include
612:info:configure                     H5_CPPFLAGS:   -DNDEBUG -UH5_DEBUG_API
613:info:configure                     AM_CPPFLAGS:
614:info:configure                         C Flags: -pipe -Os
615:info:configure                      H5 C Flags: -std=c99 -pedantic -Wall -Wextra -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Wfloat-equal -Wmissing-format-attribute -Wpacked -Wdisabled-optimization -Wformat=2 -Wunreachable-code -Wendif-labels -Wdeclaration-after-statement -Wold-style-definition -Winvalid-pch -Wvariadic-macros -Winit-self -Wmissing-include-dirs -Wswitch-default -Wswitch-enum -Wunused-macros -Wunsafe-loop-optimizations -Wc++-compat -Wnormalized -Wlogical-op -Wlarger-than=2048 -Wvla -Wsync-nand -Wframe-larger-than=16384 -Wpacked-bitfield-compat -Wstrict-overflow=5 -Wjump-misses-init -Wunsuffixed-float-constants -Wdouble-promotion -Wtrampolines -Wstack-usage=8192 -Wvector-operation-performance -Wdate-time -Warray-bounds=2 -Wc99-c11-compat -Wnull-dereference -Wunused-const-variable -Wduplicated-cond -Whsa -fstdarg-opt -s -Wno-inline -Wno-aggregate-return -Wno-missing-noreturn -Wno-suggest-attribute=const -Wno-suggest-attribute=pure -Wno-suggest-attribute=noreturn -Wno-suggest-attribute=format -O3
616:info:configure                      AM C Flags:
617:info:configure                Shared C Library: yes
618:info:configure                Static C Library: yes
619:info:configure                         Fortran: no
620:info:configure                             C++: yes
621:info:configure                    C++ Compiler: /opt/local/bin/g++-mp-6
622:info:configure                       C++ Flags: -pipe -Os
623:info:configure                    H5 C++ Flags:   
624:info:configure                    AM C++ Flags:
625:info:configure              Shared C++ Library: yes
626:info:configure              Static C++ Library: yes
627:info:configure                            Java: no
628:info:configure Features:
629:info:configure ---------
630:info:configure                   Parallel HDF5: no
631:info:configure              High-level library: yes
632:info:configure                    Threadsafety: no
633:info:configure             Default API mapping: v110
634:info:configure  With deprecated public symbols: yes
635:info:configure          I/O filters (external): deflate(zlib)
636:info:configure                             MPE: no
637:info:configure                      Direct VFD: no
638:info:configure                         dmalloc: no
639:info:configure  Packages w/ extra debug output: none
640:info:configure                     API tracing: no
641:info:configure            Using memory checker: no
642:info:configure Memory allocation sanity checks: no
643:info:configure             Metadata trace file: no
644:info:configure          Function stack tracing: no
645:info:configure       Strict file format checks: no
646:info:configure    Optimization instrumentation: no
647:debug:configure Executing proc-post-org.macports.configure-configure-0
648:info:configure --->  Patching h5cc: s|-arch [a-z0-9_]+||g
649:debug:configure Executing reinplace: /usr/bin/sed -E {s|-arch [a-z0-9_]+||g} </opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work/hdf5-1.10.1/tools/misc/h5cc >@file11
650:debug:configure couldn't read file "/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work/hdf5-1.10.1/tools/misc/h5cc": no such file or directory
651:debug:configure     while executing
652:debug:configure "exec -ignorestderr -- {*}$cmdline"
653:error:configure reinplace: couldn't read file "/opt/local/var/macports/build/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/work/hdf5-1.10.1/tools/misc/h5cc": no such file or directory
654:error:configure Failed to configure hdf5: reinplace sed(1) failed
655:debug:configure Error code: NONE
656:debug:configure Backtrace: reinplace sed(1) failed
657:debug:configure     while executing
658:debug:configure "$post $targetname"
659:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_github.com_macports_macports-ports_science_hdf5/hdf5/main.log for details.