Ticket #54365: main.log

File main.log, 117.3 KB (added by TimArnold, 7 years ago)

main.log

Line 
1version:1
2:debug:clean Attempting ln -sf /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/math/eigen3/work
3:debug:clean dropping privileges: euid changed to 503, egid changed to 501.
4:debug:main Executing org.macports.main (eigen3)
5:debug:main Privilege de-escalation not attempted as not running as root.
6:debug:archivefetch archivefetch phase started at Tue Jun 20 17:30:58 BST 2017
7:msg:archivefetch --->  Fetching archive for eigen3
8:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
9:debug:archivefetch Active variants check for archivefetch-type install considers depends_lib depends_run:
10:debug:archivefetch Executing org.macports.archivefetch (eigen3)
11:debug:archivefetch euid/egid changed to: 0/0
12:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
13:debug:archivefetch euid/egid changed to: 503/501
14:info:archivefetch --->  eigen3-3.3.4_0.darwin_16.noarch.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
15:msg:archivefetch --->  Attempting to fetch eigen3-3.3.4_0.darwin_16.noarch.tbz2 from https://packages.macports.org/eigen3
16:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
17:msg:archivefetch --->  Attempting to fetch eigen3-3.3.4_0.darwin_16.noarch.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/eigen3
18:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
19:msg:archivefetch --->  Attempting to fetch eigen3-3.3.4_0.darwin_16.noarch.tbz2 from http://lil.fr.packages.macports.org/eigen3
20:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
21:debug:archivefetch Privilege de-escalation not attempted as not running as root.
22:debug:fetch fetch phase started at Tue Jun 20 17:30:59 BST 2017
23:notice:fetch --->  Fetching distfiles for eigen3
24:debug:fetch elevating privileges for fetch: euid changed to 0, egid changed to 0.
25:debug:fetch dropping privileges: euid changed to 503, egid changed to 501.
26:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
27:debug:fetch compilers.enforce_c list:
28:debug:fetch compilers.enforce_fortran list:
29:debug:fetch compilers.enforce_some_fortran list:
30:debug:fetch Executing org.macports.fetch (eigen3)
31:info:fetch --->  3.3.4.tar.bz2 does not exist in /opt/local/var/macports/distfiles/eigen3
32:notice:fetch --->  Attempting to fetch 3.3.4.tar.bz2 from https://distfiles.macports.org/eigen3
33:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
34:notice:fetch --->  Attempting to fetch 3.3.4.tar.bz2 from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/eigen3
35:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
36:notice:fetch --->  Attempting to fetch 3.3.4.tar.bz2 from http://lil.fr.distfiles.macports.org/eigen3
37:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
38:notice:fetch --->  Attempting to fetch 3.3.4.tar.bz2 from http://osl.no.distfiles.macports.org/eigen3
39:debug:fetch Fetching distfile failed: Failed to connect to osl.no.distfiles.macports.org port 80: Connection refused
40:notice:fetch --->  Attempting to fetch 3.3.4.tar.bz2 from http://nue.de.distfiles.macports.org/eigen3
41:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
42:notice:fetch --->  Attempting to fetch 3.3.4.tar.bz2 from http://fco.it.distfiles.macports.org/mirrors/macports-distfiles/eigen3
43:debug:fetch Fetching distfile failed: The requested URL returned error: 404 Not Found
44:notice:fetch --->  Attempting to fetch 3.3.4.tar.bz2 from https://bitbucket.org/eigen/eigen/get
45:debug:fetch Privilege de-escalation not attempted as not running as root.
46:debug:checksum checksum phase started at Tue Jun 20 17:31:02 BST 2017
47:notice:checksum --->  Verifying checksums for eigen3
48:debug:checksum Executing org.macports.checksum (eigen3)
49:info:checksum --->  Checksumming 3.3.4.tar.bz2
50:debug:checksum Calculated (rmd160) is ba7687fbb66abae7ae68769877554d1a6a4004de
51:debug:checksum Correct (rmd160) checksum for 3.3.4.tar.bz2
52:debug:checksum Calculated (sha256) is dd254beb0bafc695d0f62ae1a222ff85b52dbaa3a16f76e781dce22d0d20a4a6
53:debug:checksum Correct (sha256) checksum for 3.3.4.tar.bz2
54:debug:checksum Privilege de-escalation not attempted as not running as root.
55:debug:extract extract phase started at Tue Jun 20 17:31:02 BST 2017
56:notice:extract --->  Extracting eigen3
57:debug:extract setting option extract.cmd to /usr/bin/bzip2
58:debug:extract Executing proc-pre-org.macports.extract-extract-0
59:debug:extract Executing org.macports.extract (eigen3)
60:info:extract --->  Extracting 3.3.4.tar.bz2
61:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/eigen3/3.3.4.tar.bz2'
62:debug:extract Environment:
63:debug:extract CC_PRINT_OPTIONS='YES'
64:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
65:debug:extract CPATH='/opt/local/include'
66:debug:extract LIBRARY_PATH='/opt/local/lib'
67:debug:extract MACOSX_DEPLOYMENT_TARGET='10.12'
68:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/eigen3/3.3.4.tar.bz2' | /usr/bin/tar -xf - -C /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4 --strip-components 1
69:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/eigen3/3.3.4.tar.bz2' | /usr/bin/tar -xf - -C /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4 --strip-components 1
70:debug:extract euid/egid changed to: 0/0
71:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work to macports
72:debug:extract euid/egid changed to: 503/501
73:debug:extract Executing proc-post-org.macports.extract-extract-0
74:debug:extract Privilege de-escalation not attempted as not running as root.
75:debug:patch patch phase started at Tue Jun 20 17:31:03 BST 2017
76:debug:patch Executing org.macports.patch (eigen3)
77:debug:patch Privilege de-escalation not attempted as not running as root.
78:debug:configure configure phase started at Tue Jun 20 17:31:03 BST 2017
79:notice:configure --->  Configuring eigen3
80:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
81:debug:configure Using compiler 'Xcode Clang'
82:debug:configure Executing proc-pre-org.macports.configure-configure-0
83:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
84:debug:configure Executing proc-pre-org.macports.configure-configure-1
85:debug:configure Executing proc-pre-org.macports.configure-configure-2
86:debug:configure Executing proc-pre-org.macports.configure-configure-3
87:debug:configure Executing org.macports.configure (eigen3)
88:debug:configure Environment:
89:debug:configure CC='/usr/bin/clang'
90:debug:configure CC_PRINT_OPTIONS='YES'
91:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
92:debug:configure CFLAGS='-pipe -Os'
93:debug:configure CPATH='/opt/local/include'
94:debug:configure CPPFLAGS='-I/opt/local/include'
95:debug:configure CXX='/usr/bin/clang++'
96:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
97:debug:configure F90FLAGS='-pipe -Os'
98:debug:configure FCFLAGS='-pipe -Os'
99:debug:configure FFLAGS='-pipe -Os'
100:debug:configure INSTALL='/usr/bin/install -c'
101:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
102:debug:configure LIBRARY_PATH='/opt/local/lib'
103:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
104:debug:configure OBJC='/usr/bin/clang'
105:debug:configure OBJCFLAGS='-pipe -Os'
106:debug:configure OBJCXX='/usr/bin/clang++'
107:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
108:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
109:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
110:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
111:info:configure -- The C compiler identification is AppleClang 8.1.0.8020042
112:info:configure -- The CXX compiler identification is AppleClang 8.1.0.8020042
113:info:configure -- Check for working C compiler: /usr/bin/clang
114:info:configure -- Check for working C compiler: /usr/bin/clang -- works
115:info:configure -- Detecting C compiler ABI info
116:info:configure -- Detecting C compiler ABI info - done
117:info:configure -- Detecting C compile features
118:info:configure -- Detecting C compile features - done
119:info:configure -- Check for working CXX compiler: /usr/bin/clang++
120:info:configure -- Check for working CXX compiler: /usr/bin/clang++ -- works
121:info:configure -- Detecting CXX compiler ABI info
122:info:configure -- Detecting CXX compiler ABI info - done
123:info:configure -- Detecting CXX compile features
124:info:configure -- Detecting CXX compile features - done
125:info:configure sh: /bin/ps: Operation not permitted
126:info:configure sh: /bin/ps: Operation not permitted
127:info:configure -- Performing Test standard_math_library_linked_to_automatically
128:info:configure -- Performing Test standard_math_library_linked_to_automatically - Success
129:info:configure -- Standard libraries to link to explicitly: none
130:info:configure -- Performing Test COMPILER_SUPPORT_WERROR
131:info:configure -- Performing Test COMPILER_SUPPORT_WERROR - Success
132:info:configure -- Performing Test COMPILER_SUPPORT_pedantic
133:info:configure -- Performing Test COMPILER_SUPPORT_pedantic - Success
134:info:configure -- Performing Test COMPILER_SUPPORT_Wall
135:info:configure -- Performing Test COMPILER_SUPPORT_Wall - Success
136:info:configure -- Performing Test COMPILER_SUPPORT_Wextra
137:info:configure -- Performing Test COMPILER_SUPPORT_Wextra - Success
138:info:configure -- Performing Test COMPILER_SUPPORT_Wundef
139:info:configure -- Performing Test COMPILER_SUPPORT_Wundef - Success
140:info:configure -- Performing Test COMPILER_SUPPORT_Wcastalign
141:info:configure -- Performing Test COMPILER_SUPPORT_Wcastalign - Success
142:info:configure -- Performing Test COMPILER_SUPPORT_Wcharsubscripts
143:info:configure -- Performing Test COMPILER_SUPPORT_Wcharsubscripts - Success
144:info:configure -- Performing Test COMPILER_SUPPORT_Wnonvirtualdtor
145:info:configure -- Performing Test COMPILER_SUPPORT_Wnonvirtualdtor - Success
146:info:configure -- Performing Test COMPILER_SUPPORT_Wunusedlocaltypedefs
147:info:configure -- Performing Test COMPILER_SUPPORT_Wunusedlocaltypedefs - Success
148:info:configure -- Performing Test COMPILER_SUPPORT_Wpointerarith
149:info:configure -- Performing Test COMPILER_SUPPORT_Wpointerarith - Success
150:info:configure -- Performing Test COMPILER_SUPPORT_Wwritestrings
151:info:configure -- Performing Test COMPILER_SUPPORT_Wwritestrings - Success
152:info:configure -- Performing Test COMPILER_SUPPORT_Wformatsecurity
153:info:configure -- Performing Test COMPILER_SUPPORT_Wformatsecurity - Success
154:info:configure -- Performing Test COMPILER_SUPPORT_Wshorten64to32
155:info:configure -- Performing Test COMPILER_SUPPORT_Wshorten64to32 - Success
156:info:configure -- Performing Test COMPILER_SUPPORT_Wlogicalop
157:info:configure -- Performing Test COMPILER_SUPPORT_Wlogicalop - Failed
158:info:configure -- Performing Test COMPILER_SUPPORT_Wenumconversion
159:info:configure -- Performing Test COMPILER_SUPPORT_Wenumconversion - Success
160:info:configure -- Performing Test COMPILER_SUPPORT_Wcpp11extensions
161:info:configure -- Performing Test COMPILER_SUPPORT_Wcpp11extensions - Success
162:info:configure -- Performing Test COMPILER_SUPPORT_Wdoublepromotion
163:info:configure -- Performing Test COMPILER_SUPPORT_Wdoublepromotion - Success
164:info:configure -- Performing Test COMPILER_SUPPORT_Wshadow
165:info:configure -- Performing Test COMPILER_SUPPORT_Wshadow - Success
166:info:configure -- Performing Test COMPILER_SUPPORT_Wnopsabi
167:info:configure -- Performing Test COMPILER_SUPPORT_Wnopsabi - Failed
168:info:configure -- Performing Test COMPILER_SUPPORT_Wnovariadicmacros
169:info:configure -- Performing Test COMPILER_SUPPORT_Wnovariadicmacros - Success
170:info:configure -- Performing Test COMPILER_SUPPORT_Wnolonglong
171:info:configure -- Performing Test COMPILER_SUPPORT_Wnolonglong - Success
172:info:configure -- Performing Test COMPILER_SUPPORT_fnochecknew
173:info:configure -- Performing Test COMPILER_SUPPORT_fnochecknew - Success
174:info:configure -- Performing Test COMPILER_SUPPORT_fnocommon
175:info:configure -- Performing Test COMPILER_SUPPORT_fnocommon - Success
176:info:configure -- Performing Test COMPILER_SUPPORT_fstrictaliasing
177:info:configure -- Performing Test COMPILER_SUPPORT_fstrictaliasing - Success
178:info:configure -- Performing Test COMPILER_SUPPORT_wd981
179:info:configure -- Performing Test COMPILER_SUPPORT_wd981 - Failed
180:info:configure -- Performing Test COMPILER_SUPPORT_wd2304
181:info:configure -- Performing Test COMPILER_SUPPORT_wd2304 - Failed
182:info:configure -- Performing Test COMPILER_SUPPORT_STRICTANSI
183:info:configure -- Performing Test COMPILER_SUPPORT_STRICTANSI - Failed
184:info:configure -- Performing Test COMPILER_SUPPORT_Qunusedarguments
185:info:configure -- Performing Test COMPILER_SUPPORT_Qunusedarguments - Success
186:info:configure -- Performing Test COMPILER_SUPPORT_ansi
187:info:configure -- Performing Test COMPILER_SUPPORT_ansi - Success
188:info:configure -- Performing Test COMPILER_SUPPORT_OPENMP
189:info:configure -- Performing Test COMPILER_SUPPORT_OPENMP - Failed
190:info:configure -- Performing Test EIGEN_COMPILER_SUPPORT_CPP11
191:info:configure -- Performing Test EIGEN_COMPILER_SUPPORT_CPP11 - Success
192:info:configure -- Found unsuitable Qt version "" from NOTFOUND
193:info:configure -- Performing Test EIGEN_COMPILER_SUPPORT_CXX11
194:info:configure -- Performing Test EIGEN_COMPILER_SUPPORT_CXX11 - Success
195:info:configure sh: /bin/ps: Operation not permitted
196:info:configure sh: /bin/ps: Operation not permitted
197:info:configure sh: /bin/ps: Operation not permitted
198:info:configure sh: /bin/ps: Operation not permitted
199:info:configure -- The Fortran compiler identification is unknown
200:info:configure sh: /bin/ps: Operation not permitted
201:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
202:info:configure -- Looking for BLAS -- mkl.h not found
203:info:configure -- Looking for pthread.h
204:info:configure -- Looking for pthread.h - found
205:info:configure -- Looking for pthread_create
206:info:configure -- Looking for pthread_create - found
207:info:configure -- Found Threads: TRUE 
208:info:configure -- Looking for MKL BLAS: not found
209:info:configure -- Looking for Goto BLAS: not found
210:info:configure -- Looking for Open BLAS: not found
211:info:configure -- Looking for Eigen BLAS: not found
212:info:configure -- Looking for Eigen BLAS: not found
213:info:configure -- Looking for Atlas BLAS: not found
214:info:configure -- Looking for PhiPACK BLAS: not found
215:info:configure -- Looking for CXML BLAS: not found
216:info:configure -- Looking for DXML BLAS: not found
217:info:configure -- Looking for SunPerf BLAS: not found
218:info:configure -- Looking for SCSL BLAS: not found
219:info:configure -- Looking for SGIMATH BLAS: not found
220:info:configure -- Looking for IBM ESSL BLAS: not found
221:info:configure -- Looking for IBM ESSL MT BLAS: not found
222:info:configure -- Looking for ACML BLAS: not found
223:info:configure -- Looking for ACML BLAS: not found
224:info:configure -- Looking for ACML BLAS: not found
225:info:configure -- Looking for Apple BLAS: not found
226:info:configure -- Looking for NAS BLAS: not found
227:info:configure -- Looking for Fortran sgemm
228:info:configure -- Looking for Fortran sgemm - not found
229:info:configure -- Looking for Generic BLAS: not found
230:info:configure -- Looking for Generic BLAS: not found
231:info:configure -- Looking for Generic BLAS: not found
232:info:configure -- Looking for Generic BLAS: not found
233:info:configure -- Looking for Generic BLAS: not found
234:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
235:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
236:info:configure   check of symbols failed.
237:info:configure   Please indicate where to find blas libraries.  You have three options:
238:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
239:info:configure   option: -DBLAS_DIR=your/path/to/blas
240:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
241:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
242:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
243:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
244:info:configure   
245:info:configure   To follow libraries detection more precisely you can activate a verbose
246:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
247:info:configure   You could also specify a BLAS vendor to look for by setting
248:info:configure   -DBLA_VENDOR=blas_vendor_name.
249:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
250:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
251:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
252:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
253:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
254:info:configure Call Stack (most recent call first):
255:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
256:info:configure   test/CMakeLists.txt:30 (find_package)
257:info:configure -- A library with BLAS API not found. Please specify library location.
258:info:configure -- LAPACK requires BLAS.
259:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
260:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
261:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
262:info:configure -- Found PkgConfig: /opt/local/bin/pkg-config (found version "0.29.2")
263:info:configure -- Checking for one of the modules 'hwloc'
264:info:configure -- Looking for Fortran sgemm
265:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
266:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
267:info:configure   Failed to configure test project build system.
268:info:configure Call Stack (most recent call first):
269:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
270:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
271:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
272:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
273:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
274:info:configure   test/CMakeLists.txt:83 (find_package)
275:info:configure -- Configuring incomplete, errors occurred!
276:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
277:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
278:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
279:info:configure Exit code: 1
280:error:configure Failed to configure eigen3: configure failure: command execution failed
281:debug:configure Error code: NONE
282:debug:configure Backtrace: configure failure: command execution failed
283:debug:configure     while executing
284:debug:configure "$procedure $targetname"
285:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
286:debug:configure     while executing
287:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
288:debug:configure     invoked from within
289:debug:configure "try -pass_signal {
290:debug:configure             set cmd_path [macports::binaryInPath $prog]
291:debug:configure             return $cmd_path
292:debug:configure         } catch {{*} eCode eMessage} {
293:debug:configure        ..."
294:debug:configure     (procedure "macports::findBinary" line 5)
295:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
296version:1
297:debug:main dropping privileges: euid changed to 503, egid changed to 501.
298:debug:main Executing org.macports.main (eigen3)
299:debug:main Privilege de-escalation not attempted as not running as root.
300:debug:main Skipping completed org.macports.archivefetch (eigen3)
301:debug:main Privilege de-escalation not attempted as not running as root.
302:debug:main Skipping completed org.macports.fetch (eigen3)
303:debug:main Privilege de-escalation not attempted as not running as root.
304:debug:main Skipping completed org.macports.checksum (eigen3)
305:debug:main Privilege de-escalation not attempted as not running as root.
306:debug:main Skipping completed org.macports.extract (eigen3)
307:debug:main Privilege de-escalation not attempted as not running as root.
308:debug:main Skipping completed org.macports.patch (eigen3)
309:debug:main Privilege de-escalation not attempted as not running as root.
310:debug:configure configure phase started at Tue Jun 20 18:31:18 BST 2017
311:notice:configure --->  Configuring eigen3
312:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
313:debug:configure Using compiler 'Xcode Clang'
314:debug:configure Executing proc-pre-org.macports.configure-configure-0
315:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
316:debug:configure Executing proc-pre-org.macports.configure-configure-1
317:debug:configure Executing proc-pre-org.macports.configure-configure-2
318:debug:configure Executing proc-pre-org.macports.configure-configure-3
319:debug:configure Executing org.macports.configure (eigen3)
320:debug:configure Environment:
321:debug:configure CC='/usr/bin/clang'
322:debug:configure CC_PRINT_OPTIONS='YES'
323:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
324:debug:configure CFLAGS='-pipe -Os'
325:debug:configure CPATH='/opt/local/include'
326:debug:configure CPPFLAGS='-I/opt/local/include'
327:debug:configure CXX='/usr/bin/clang++'
328:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
329:debug:configure F90FLAGS='-pipe -Os'
330:debug:configure FCFLAGS='-pipe -Os'
331:debug:configure FFLAGS='-pipe -Os'
332:debug:configure INSTALL='/usr/bin/install -c'
333:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
334:debug:configure LIBRARY_PATH='/opt/local/lib'
335:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
336:debug:configure OBJC='/usr/bin/clang'
337:debug:configure OBJCFLAGS='-pipe -Os'
338:debug:configure OBJCXX='/usr/bin/clang++'
339:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
340:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
341:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
342:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
343:info:configure sh: /bin/ps: Operation not permitted
344:info:configure sh: /bin/ps: Operation not permitted
345:info:configure -- Standard libraries to link to explicitly: none
346:info:configure -- Found unsuitable Qt version "" from NOTFOUND
347:info:configure sh: /bin/ps: Operation not permitted
348:info:configure sh: /bin/ps: Operation not permitted
349:info:configure sh: /bin/ps: Operation not permitted
350:info:configure sh: /bin/ps: Operation not permitted
351:info:configure -- The Fortran compiler identification is unknown
352:info:configure sh: /bin/ps: Operation not permitted
353:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
354:info:configure -- Looking for BLAS -- mkl.h not found
355:info:configure -- Looking for MKL BLAS: not found
356:info:configure -- Looking for Goto BLAS: not found
357:info:configure -- Looking for Open BLAS: not found
358:info:configure -- Looking for Eigen BLAS: not found
359:info:configure -- Looking for Eigen BLAS: not found
360:info:configure -- Looking for Atlas BLAS: not found
361:info:configure -- Looking for PhiPACK BLAS: not found
362:info:configure -- Looking for CXML BLAS: not found
363:info:configure -- Looking for DXML BLAS: not found
364:info:configure -- Looking for SunPerf BLAS: not found
365:info:configure -- Looking for SCSL BLAS: not found
366:info:configure -- Looking for SGIMATH BLAS: not found
367:info:configure -- Looking for IBM ESSL BLAS: not found
368:info:configure -- Looking for IBM ESSL MT BLAS: not found
369:info:configure -- Looking for ACML BLAS: not found
370:info:configure -- Looking for ACML BLAS: not found
371:info:configure -- Looking for ACML BLAS: not found
372:info:configure -- Looking for Apple BLAS: not found
373:info:configure -- Looking for NAS BLAS: not found
374:info:configure -- Looking for Fortran sgemm
375:info:configure -- Looking for Fortran sgemm - not found
376:info:configure -- Looking for Generic BLAS: not found
377:info:configure -- Looking for Generic BLAS: not found
378:info:configure -- Looking for Generic BLAS: not found
379:info:configure -- Looking for Generic BLAS: not found
380:info:configure -- Looking for Generic BLAS: not found
381:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
382:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
383:info:configure   check of symbols failed.
384:info:configure   Please indicate where to find blas libraries.  You have three options:
385:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
386:info:configure   option: -DBLAS_DIR=your/path/to/blas
387:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
388:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
389:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
390:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
391:info:configure   
392:info:configure   To follow libraries detection more precisely you can activate a verbose
393:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
394:info:configure   You could also specify a BLAS vendor to look for by setting
395:info:configure   -DBLA_VENDOR=blas_vendor_name.
396:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
397:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
398:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
399:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
400:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
401:info:configure Call Stack (most recent call first):
402:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
403:info:configure   test/CMakeLists.txt:30 (find_package)
404:info:configure -- A library with BLAS API not found. Please specify library location.
405:info:configure -- LAPACK requires BLAS.
406:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
407:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
408:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
409:info:configure -- Checking for one of the modules 'hwloc'
410:info:configure -- Looking for Fortran sgemm
411:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
412:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
413:info:configure   Failed to configure test project build system.
414:info:configure Call Stack (most recent call first):
415:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
416:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
417:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
418:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
419:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
420:info:configure   test/CMakeLists.txt:83 (find_package)
421:info:configure -- Configuring incomplete, errors occurred!
422:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
423:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
424:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
425:info:configure Exit code: 1
426:error:configure Failed to configure eigen3: configure failure: command execution failed
427:debug:configure Error code: NONE
428:debug:configure Backtrace: configure failure: command execution failed
429:debug:configure     while executing
430:debug:configure "$procedure $targetname"
431:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
432:debug:configure     while executing
433:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
434:debug:configure     invoked from within
435:debug:configure "try -pass_signal {
436:debug:configure             set cmd_path [macports::binaryInPath $prog]
437:debug:configure             return $cmd_path
438:debug:configure         } catch {{*} eCode eMessage} {
439:debug:configure        ..."
440:debug:configure     (procedure "macports::findBinary" line 5)
441:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
442version:1
443:debug:main dropping privileges: euid changed to 503, egid changed to 501.
444:debug:main Executing org.macports.main (eigen3)
445:debug:main Privilege de-escalation not attempted as not running as root.
446:debug:main Skipping completed org.macports.archivefetch (eigen3)
447:debug:main Privilege de-escalation not attempted as not running as root.
448:debug:main Skipping completed org.macports.fetch (eigen3)
449:debug:main Privilege de-escalation not attempted as not running as root.
450:debug:main Skipping completed org.macports.checksum (eigen3)
451:debug:main Privilege de-escalation not attempted as not running as root.
452:debug:main Skipping completed org.macports.extract (eigen3)
453:debug:main Privilege de-escalation not attempted as not running as root.
454:debug:main Skipping completed org.macports.patch (eigen3)
455:debug:main Privilege de-escalation not attempted as not running as root.
456:debug:configure configure phase started at Thu Jun 22 09:08:21 BST 2017
457:notice:configure --->  Configuring eigen3
458:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
459:debug:configure Using compiler 'Xcode Clang'
460:debug:configure Executing proc-pre-org.macports.configure-configure-0
461:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
462:debug:configure Executing proc-pre-org.macports.configure-configure-1
463:debug:configure Executing proc-pre-org.macports.configure-configure-2
464:debug:configure Executing proc-pre-org.macports.configure-configure-3
465:debug:configure Executing org.macports.configure (eigen3)
466:debug:configure Environment:
467:debug:configure CC='/usr/bin/clang'
468:debug:configure CC_PRINT_OPTIONS='YES'
469:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
470:debug:configure CFLAGS='-pipe -Os'
471:debug:configure CPATH='/opt/local/include'
472:debug:configure CPPFLAGS='-I/opt/local/include'
473:debug:configure CXX='/usr/bin/clang++'
474:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
475:debug:configure F90FLAGS='-pipe -Os'
476:debug:configure FCFLAGS='-pipe -Os'
477:debug:configure FFLAGS='-pipe -Os'
478:debug:configure INSTALL='/usr/bin/install -c'
479:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
480:debug:configure LIBRARY_PATH='/opt/local/lib'
481:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
482:debug:configure OBJC='/usr/bin/clang'
483:debug:configure OBJCFLAGS='-pipe -Os'
484:debug:configure OBJCXX='/usr/bin/clang++'
485:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
486:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
487:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
488:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
489:info:configure sh: /bin/ps: Operation not permitted
490:info:configure sh: /bin/ps: Operation not permitted
491:info:configure -- Standard libraries to link to explicitly: none
492:info:configure -- Found unsuitable Qt version "" from NOTFOUND
493:info:configure sh: /bin/ps: Operation not permitted
494:info:configure sh: /bin/ps: Operation not permitted
495:info:configure sh: /bin/ps: Operation not permitted
496:info:configure sh: /bin/ps: Operation not permitted
497:info:configure -- The Fortran compiler identification is unknown
498:info:configure sh: /bin/ps: Operation not permitted
499:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
500:info:configure -- Looking for BLAS -- mkl.h not found
501:info:configure -- Looking for MKL BLAS: not found
502:info:configure -- Looking for Goto BLAS: not found
503:info:configure -- Looking for Open BLAS: not found
504:info:configure -- Looking for Eigen BLAS: not found
505:info:configure -- Looking for Eigen BLAS: not found
506:info:configure -- Looking for Atlas BLAS: not found
507:info:configure -- Looking for PhiPACK BLAS: not found
508:info:configure -- Looking for CXML BLAS: not found
509:info:configure -- Looking for DXML BLAS: not found
510:info:configure -- Looking for SunPerf BLAS: not found
511:info:configure -- Looking for SCSL BLAS: not found
512:info:configure -- Looking for SGIMATH BLAS: not found
513:info:configure -- Looking for IBM ESSL BLAS: not found
514:info:configure -- Looking for IBM ESSL MT BLAS: not found
515:info:configure -- Looking for ACML BLAS: not found
516:info:configure -- Looking for ACML BLAS: not found
517:info:configure -- Looking for ACML BLAS: not found
518:info:configure -- Looking for Apple BLAS: not found
519:info:configure -- Looking for NAS BLAS: not found
520:info:configure -- Looking for Fortran sgemm
521:info:configure -- Looking for Fortran sgemm - not found
522:info:configure -- Looking for Generic BLAS: not found
523:info:configure -- Looking for Generic BLAS: not found
524:info:configure -- Looking for Generic BLAS: not found
525:info:configure -- Looking for Generic BLAS: not found
526:info:configure -- Looking for Generic BLAS: not found
527:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
528:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
529:info:configure   check of symbols failed.
530:info:configure   Please indicate where to find blas libraries.  You have three options:
531:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
532:info:configure   option: -DBLAS_DIR=your/path/to/blas
533:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
534:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
535:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
536:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
537:info:configure   
538:info:configure   To follow libraries detection more precisely you can activate a verbose
539:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
540:info:configure   You could also specify a BLAS vendor to look for by setting
541:info:configure   -DBLA_VENDOR=blas_vendor_name.
542:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
543:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
544:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
545:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
546:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
547:info:configure Call Stack (most recent call first):
548:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
549:info:configure   test/CMakeLists.txt:30 (find_package)
550:info:configure -- A library with BLAS API not found. Please specify library location.
551:info:configure -- LAPACK requires BLAS.
552:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
553:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
554:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
555:info:configure -- Checking for one of the modules 'hwloc'
556:info:configure -- Looking for Fortran sgemm
557:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
558:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
559:info:configure   Failed to configure test project build system.
560:info:configure Call Stack (most recent call first):
561:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
562:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
563:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
564:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
565:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
566:info:configure   test/CMakeLists.txt:83 (find_package)
567:info:configure -- Configuring incomplete, errors occurred!
568:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
569:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
570:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
571:info:configure Exit code: 1
572:error:configure Failed to configure eigen3: configure failure: command execution failed
573:debug:configure Error code: NONE
574:debug:configure Backtrace: configure failure: command execution failed
575:debug:configure     while executing
576:debug:configure "$procedure $targetname"
577:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
578:debug:configure     while executing
579:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
580:debug:configure     invoked from within
581:debug:configure "try -pass_signal {
582:debug:configure             set cmd_path [macports::binaryInPath $prog]
583:debug:configure             return $cmd_path
584:debug:configure         } catch {{*} eCode eMessage} {
585:debug:configure        ..."
586:debug:configure     (procedure "macports::findBinary" line 5)
587:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
588version:1
589:debug:main dropping privileges: euid changed to 503, egid changed to 501.
590:debug:main Executing org.macports.main (eigen3)
591:debug:main Privilege de-escalation not attempted as not running as root.
592:debug:main Skipping completed org.macports.archivefetch (eigen3)
593:debug:main Privilege de-escalation not attempted as not running as root.
594:debug:main Skipping completed org.macports.fetch (eigen3)
595:debug:main Privilege de-escalation not attempted as not running as root.
596:debug:main Skipping completed org.macports.checksum (eigen3)
597:debug:main Privilege de-escalation not attempted as not running as root.
598:debug:main Skipping completed org.macports.extract (eigen3)
599:debug:main Privilege de-escalation not attempted as not running as root.
600:debug:main Skipping completed org.macports.patch (eigen3)
601:debug:main Privilege de-escalation not attempted as not running as root.
602:debug:configure configure phase started at Thu Jun 22 09:26:43 BST 2017
603:notice:configure --->  Configuring eigen3
604:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
605:debug:configure Using compiler 'Xcode Clang'
606:debug:configure Executing proc-pre-org.macports.configure-configure-0
607:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
608:debug:configure Executing proc-pre-org.macports.configure-configure-1
609:debug:configure Executing proc-pre-org.macports.configure-configure-2
610:debug:configure Executing proc-pre-org.macports.configure-configure-3
611:debug:configure Executing org.macports.configure (eigen3)
612:debug:configure Environment:
613:debug:configure CC='/usr/bin/clang'
614:debug:configure CC_PRINT_OPTIONS='YES'
615:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
616:debug:configure CFLAGS='-pipe -Os'
617:debug:configure CPATH='/opt/local/include'
618:debug:configure CPPFLAGS='-I/opt/local/include'
619:debug:configure CXX='/usr/bin/clang++'
620:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
621:debug:configure F90FLAGS='-pipe -Os'
622:debug:configure FCFLAGS='-pipe -Os'
623:debug:configure FFLAGS='-pipe -Os'
624:debug:configure INSTALL='/usr/bin/install -c'
625:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
626:debug:configure LIBRARY_PATH='/opt/local/lib'
627:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
628:debug:configure OBJC='/usr/bin/clang'
629:debug:configure OBJCFLAGS='-pipe -Os'
630:debug:configure OBJCXX='/usr/bin/clang++'
631:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
632:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
633:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
634:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
635:info:configure sh: /bin/ps: Operation not permitted
636:info:configure sh: /bin/ps: Operation not permitted
637:info:configure -- Standard libraries to link to explicitly: none
638:info:configure -- Found unsuitable Qt version "" from NOTFOUND
639:info:configure sh: /bin/ps: Operation not permitted
640:info:configure sh: /bin/ps: Operation not permitted
641:info:configure sh: /bin/ps: Operation not permitted
642:info:configure sh: /bin/ps: Operation not permitted
643:info:configure -- The Fortran compiler identification is unknown
644:info:configure sh: /bin/ps: Operation not permitted
645:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
646:info:configure -- Looking for BLAS -- mkl.h not found
647:info:configure -- Looking for MKL BLAS: not found
648:info:configure -- Looking for Goto BLAS: not found
649:info:configure -- Looking for Open BLAS: not found
650:info:configure -- Looking for Eigen BLAS: not found
651:info:configure -- Looking for Eigen BLAS: not found
652:info:configure -- Looking for Atlas BLAS: not found
653:info:configure -- Looking for PhiPACK BLAS: not found
654:info:configure -- Looking for CXML BLAS: not found
655:info:configure -- Looking for DXML BLAS: not found
656:info:configure -- Looking for SunPerf BLAS: not found
657:info:configure -- Looking for SCSL BLAS: not found
658:info:configure -- Looking for SGIMATH BLAS: not found
659:info:configure -- Looking for IBM ESSL BLAS: not found
660:info:configure -- Looking for IBM ESSL MT BLAS: not found
661:info:configure -- Looking for ACML BLAS: not found
662:info:configure -- Looking for ACML BLAS: not found
663:info:configure -- Looking for ACML BLAS: not found
664:info:configure -- Looking for Apple BLAS: not found
665:info:configure -- Looking for NAS BLAS: not found
666:info:configure -- Looking for Fortran sgemm
667:info:configure -- Looking for Fortran sgemm - not found
668:info:configure -- Looking for Generic BLAS: not found
669:info:configure -- Looking for Generic BLAS: not found
670:info:configure -- Looking for Generic BLAS: not found
671:info:configure -- Looking for Generic BLAS: not found
672:info:configure -- Looking for Generic BLAS: not found
673:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
674:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
675:info:configure   check of symbols failed.
676:info:configure   Please indicate where to find blas libraries.  You have three options:
677:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
678:info:configure   option: -DBLAS_DIR=your/path/to/blas
679:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
680:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
681:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
682:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
683:info:configure   
684:info:configure   To follow libraries detection more precisely you can activate a verbose
685:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
686:info:configure   You could also specify a BLAS vendor to look for by setting
687:info:configure   -DBLA_VENDOR=blas_vendor_name.
688:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
689:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
690:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
691:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
692:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
693:info:configure Call Stack (most recent call first):
694:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
695:info:configure   test/CMakeLists.txt:30 (find_package)
696:info:configure -- A library with BLAS API not found. Please specify library location.
697:info:configure -- LAPACK requires BLAS.
698:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
699:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
700:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
701:info:configure -- Checking for one of the modules 'hwloc'
702:info:configure -- Looking for Fortran sgemm
703:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
704:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
705:info:configure   Failed to configure test project build system.
706:info:configure Call Stack (most recent call first):
707:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
708:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
709:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
710:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
711:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
712:info:configure   test/CMakeLists.txt:83 (find_package)
713:info:configure -- Configuring incomplete, errors occurred!
714:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
715:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
716:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
717:info:configure Exit code: 1
718:error:configure Failed to configure eigen3: configure failure: command execution failed
719:debug:configure Error code: NONE
720:debug:configure Backtrace: configure failure: command execution failed
721:debug:configure     while executing
722:debug:configure "$procedure $targetname"
723:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
724:debug:configure     while executing
725:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
726:debug:configure     invoked from within
727:debug:configure "try -pass_signal {
728:debug:configure             set cmd_path [macports::binaryInPath $prog]
729:debug:configure             return $cmd_path
730:debug:configure         } catch {{*} eCode eMessage} {
731:debug:configure        ..."
732:debug:configure     (procedure "macports::findBinary" line 5)
733:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
734version:1
735:debug:main dropping privileges: euid changed to 503, egid changed to 501.
736:debug:main Executing org.macports.main (eigen3)
737:debug:main Privilege de-escalation not attempted as not running as root.
738:debug:main Skipping completed org.macports.archivefetch (eigen3)
739:debug:main Privilege de-escalation not attempted as not running as root.
740:debug:main Skipping completed org.macports.fetch (eigen3)
741:debug:main Privilege de-escalation not attempted as not running as root.
742:debug:main Skipping completed org.macports.checksum (eigen3)
743:debug:main Privilege de-escalation not attempted as not running as root.
744:debug:main Skipping completed org.macports.extract (eigen3)
745:debug:main Privilege de-escalation not attempted as not running as root.
746:debug:main Skipping completed org.macports.patch (eigen3)
747:debug:main Privilege de-escalation not attempted as not running as root.
748:debug:configure configure phase started at Thu Jun 22 09:28:45 BST 2017
749:notice:configure --->  Configuring eigen3
750:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
751:debug:configure Using compiler 'Xcode Clang'
752:debug:configure Executing proc-pre-org.macports.configure-configure-0
753:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
754:debug:configure Executing proc-pre-org.macports.configure-configure-1
755:debug:configure Executing proc-pre-org.macports.configure-configure-2
756:debug:configure Executing proc-pre-org.macports.configure-configure-3
757:debug:configure Executing org.macports.configure (eigen3)
758:debug:configure Environment:
759:debug:configure CC='/usr/bin/clang'
760:debug:configure CC_PRINT_OPTIONS='YES'
761:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
762:debug:configure CFLAGS='-pipe -Os'
763:debug:configure CPATH='/opt/local/include'
764:debug:configure CPPFLAGS='-I/opt/local/include'
765:debug:configure CXX='/usr/bin/clang++'
766:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
767:debug:configure F90FLAGS='-pipe -Os'
768:debug:configure FCFLAGS='-pipe -Os'
769:debug:configure FFLAGS='-pipe -Os'
770:debug:configure INSTALL='/usr/bin/install -c'
771:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
772:debug:configure LIBRARY_PATH='/opt/local/lib'
773:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
774:debug:configure OBJC='/usr/bin/clang'
775:debug:configure OBJCFLAGS='-pipe -Os'
776:debug:configure OBJCXX='/usr/bin/clang++'
777:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
778:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
779:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
780:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
781:info:configure sh: /bin/ps: Operation not permitted
782:info:configure sh: /bin/ps: Operation not permitted
783:info:configure -- Standard libraries to link to explicitly: none
784:info:configure -- Found unsuitable Qt version "" from NOTFOUND
785:info:configure sh: /bin/ps: Operation not permitted
786:info:configure sh: /bin/ps: Operation not permitted
787:info:configure sh: /bin/ps: Operation not permitted
788:info:configure sh: /bin/ps: Operation not permitted
789:info:configure -- The Fortran compiler identification is unknown
790:info:configure sh: /bin/ps: Operation not permitted
791:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
792:info:configure -- Looking for BLAS -- mkl.h not found
793:info:configure -- Looking for MKL BLAS: not found
794:info:configure -- Looking for Goto BLAS: not found
795:info:configure -- Looking for Open BLAS: not found
796:info:configure -- Looking for Eigen BLAS: not found
797:info:configure -- Looking for Eigen BLAS: not found
798:info:configure -- Looking for Atlas BLAS: not found
799:info:configure -- Looking for PhiPACK BLAS: not found
800:info:configure -- Looking for CXML BLAS: not found
801:info:configure -- Looking for DXML BLAS: not found
802:info:configure -- Looking for SunPerf BLAS: not found
803:info:configure -- Looking for SCSL BLAS: not found
804:info:configure -- Looking for SGIMATH BLAS: not found
805:info:configure -- Looking for IBM ESSL BLAS: not found
806:info:configure -- Looking for IBM ESSL MT BLAS: not found
807:info:configure -- Looking for ACML BLAS: not found
808:info:configure -- Looking for ACML BLAS: not found
809:info:configure -- Looking for ACML BLAS: not found
810:info:configure -- Looking for Apple BLAS: not found
811:info:configure -- Looking for NAS BLAS: not found
812:info:configure -- Looking for Fortran sgemm
813:info:configure -- Looking for Fortran sgemm - not found
814:info:configure -- Looking for Generic BLAS: not found
815:info:configure -- Looking for Generic BLAS: not found
816:info:configure -- Looking for Generic BLAS: not found
817:info:configure -- Looking for Generic BLAS: not found
818:info:configure -- Looking for Generic BLAS: not found
819:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
820:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
821:info:configure   check of symbols failed.
822:info:configure   Please indicate where to find blas libraries.  You have three options:
823:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
824:info:configure   option: -DBLAS_DIR=your/path/to/blas
825:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
826:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
827:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
828:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
829:info:configure   
830:info:configure   To follow libraries detection more precisely you can activate a verbose
831:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
832:info:configure   You could also specify a BLAS vendor to look for by setting
833:info:configure   -DBLA_VENDOR=blas_vendor_name.
834:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
835:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
836:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
837:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
838:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
839:info:configure Call Stack (most recent call first):
840:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
841:info:configure   test/CMakeLists.txt:30 (find_package)
842:info:configure -- A library with BLAS API not found. Please specify library location.
843:info:configure -- LAPACK requires BLAS.
844:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
845:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
846:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
847:info:configure -- Checking for one of the modules 'hwloc'
848:info:configure -- Looking for Fortran sgemm
849:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
850:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
851:info:configure   Failed to configure test project build system.
852:info:configure Call Stack (most recent call first):
853:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
854:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
855:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
856:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
857:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
858:info:configure   test/CMakeLists.txt:83 (find_package)
859:info:configure -- Configuring incomplete, errors occurred!
860:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
861:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
862:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
863:info:configure Exit code: 1
864:error:configure Failed to configure eigen3: configure failure: command execution failed
865:debug:configure Error code: NONE
866:debug:configure Backtrace: configure failure: command execution failed
867:debug:configure     while executing
868:debug:configure "$procedure $targetname"
869:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
870:debug:configure     while executing
871:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
872:debug:configure     invoked from within
873:debug:configure "try -pass_signal {
874:debug:configure             set cmd_path [macports::binaryInPath $prog]
875:debug:configure             return $cmd_path
876:debug:configure         } catch {{*} eCode eMessage} {
877:debug:configure        ..."
878:debug:configure     (procedure "macports::findBinary" line 5)
879:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
880version:1
881:debug:main Checking for conflicts against eigen3
882:debug:main Searching for dependency: eigen3-devel
883:debug:main Didn't find receipt, going to depspec regex for: eigen3-devel
884:debug:main Executing org.macports.main (eigen3)
885:debug:main dropping privileges: euid changed to 503, egid changed to 501.
886:debug:main Skipping completed org.macports.archivefetch (eigen3)
887:debug:main Privilege de-escalation not attempted as not running as root.
888:debug:main Skipping completed org.macports.fetch (eigen3)
889:debug:main Privilege de-escalation not attempted as not running as root.
890:debug:main Skipping completed org.macports.checksum (eigen3)
891:debug:main Privilege de-escalation not attempted as not running as root.
892:debug:main Skipping completed org.macports.extract (eigen3)
893:debug:main Privilege de-escalation not attempted as not running as root.
894:debug:main Skipping completed org.macports.patch (eigen3)
895:debug:main Privilege de-escalation not attempted as not running as root.
896:debug:configure configure phase started at Thu Jun 22 09:54:04 BST 2017
897:notice:configure --->  Configuring eigen3
898:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
899:debug:configure Using compiler 'Xcode Clang'
900:debug:configure Executing proc-pre-org.macports.configure-configure-0
901:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
902:debug:configure Executing proc-pre-org.macports.configure-configure-1
903:debug:configure Executing proc-pre-org.macports.configure-configure-2
904:debug:configure Executing proc-pre-org.macports.configure-configure-3
905:debug:configure Executing org.macports.configure (eigen3)
906:debug:configure Environment:
907:debug:configure CC='/usr/bin/clang'
908:debug:configure CC_PRINT_OPTIONS='YES'
909:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
910:debug:configure CFLAGS='-pipe -Os'
911:debug:configure CPATH='/opt/local/include'
912:debug:configure CPPFLAGS='-I/opt/local/include'
913:debug:configure CXX='/usr/bin/clang++'
914:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
915:debug:configure F90FLAGS='-pipe -Os'
916:debug:configure FCFLAGS='-pipe -Os'
917:debug:configure FFLAGS='-pipe -Os'
918:debug:configure INSTALL='/usr/bin/install -c'
919:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
920:debug:configure LIBRARY_PATH='/opt/local/lib'
921:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
922:debug:configure OBJC='/usr/bin/clang'
923:debug:configure OBJCFLAGS='-pipe -Os'
924:debug:configure OBJCXX='/usr/bin/clang++'
925:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
926:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
927:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
928:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
929:info:configure sh: /bin/ps: Operation not permitted
930:info:configure sh: /bin/ps: Operation not permitted
931:info:configure -- Standard libraries to link to explicitly: none
932:info:configure -- Found unsuitable Qt version "" from NOTFOUND
933:info:configure sh: /bin/ps: Operation not permitted
934:info:configure sh: /bin/ps: Operation not permitted
935:info:configure sh: /bin/ps: Operation not permitted
936:info:configure sh: /bin/ps: Operation not permitted
937:info:configure -- The Fortran compiler identification is unknown
938:info:configure sh: /bin/ps: Operation not permitted
939:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
940:info:configure -- Looking for BLAS -- mkl.h not found
941:info:configure -- Looking for MKL BLAS: not found
942:info:configure -- Looking for Goto BLAS: not found
943:info:configure -- Looking for Open BLAS: not found
944:info:configure -- Looking for Eigen BLAS: not found
945:info:configure -- Looking for Eigen BLAS: not found
946:info:configure -- Looking for Atlas BLAS: not found
947:info:configure -- Looking for PhiPACK BLAS: not found
948:info:configure -- Looking for CXML BLAS: not found
949:info:configure -- Looking for DXML BLAS: not found
950:info:configure -- Looking for SunPerf BLAS: not found
951:info:configure -- Looking for SCSL BLAS: not found
952:info:configure -- Looking for SGIMATH BLAS: not found
953:info:configure -- Looking for IBM ESSL BLAS: not found
954:info:configure -- Looking for IBM ESSL MT BLAS: not found
955:info:configure -- Looking for ACML BLAS: not found
956:info:configure -- Looking for ACML BLAS: not found
957:info:configure -- Looking for ACML BLAS: not found
958:info:configure -- Looking for Apple BLAS: not found
959:info:configure -- Looking for NAS BLAS: not found
960:info:configure -- Looking for Fortran sgemm
961:info:configure -- Looking for Fortran sgemm - not found
962:info:configure -- Looking for Generic BLAS: not found
963:info:configure -- Looking for Generic BLAS: not found
964:info:configure -- Looking for Generic BLAS: not found
965:info:configure -- Looking for Generic BLAS: not found
966:info:configure -- Looking for Generic BLAS: not found
967:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
968:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
969:info:configure   check of symbols failed.
970:info:configure   Please indicate where to find blas libraries.  You have three options:
971:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
972:info:configure   option: -DBLAS_DIR=your/path/to/blas
973:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
974:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
975:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
976:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
977:info:configure   
978:info:configure   To follow libraries detection more precisely you can activate a verbose
979:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
980:info:configure   You could also specify a BLAS vendor to look for by setting
981:info:configure   -DBLA_VENDOR=blas_vendor_name.
982:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
983:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
984:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
985:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
986:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
987:info:configure Call Stack (most recent call first):
988:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
989:info:configure   test/CMakeLists.txt:30 (find_package)
990:info:configure -- A library with BLAS API not found. Please specify library location.
991:info:configure -- LAPACK requires BLAS.
992:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
993:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
994:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
995:info:configure -- Checking for one of the modules 'hwloc'
996:info:configure -- Looking for Fortran sgemm
997:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
998:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
999:info:configure   Failed to configure test project build system.
1000:info:configure Call Stack (most recent call first):
1001:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
1002:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
1003:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
1004:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
1005:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
1006:info:configure   test/CMakeLists.txt:83 (find_package)
1007:info:configure -- Configuring incomplete, errors occurred!
1008:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
1009:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
1010:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1011:info:configure Exit code: 1
1012:error:configure Failed to configure eigen3: configure failure: command execution failed
1013:debug:configure Error code: NONE
1014:debug:configure Backtrace: configure failure: command execution failed
1015:debug:configure     while executing
1016:debug:configure "$procedure $targetname"
1017:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
1018version:1
1019:debug:main dropping privileges: euid changed to 503, egid changed to 501.
1020:debug:main Executing org.macports.main (eigen3)
1021:debug:main Privilege de-escalation not attempted as not running as root.
1022:debug:main Skipping completed org.macports.archivefetch (eigen3)
1023:debug:main Privilege de-escalation not attempted as not running as root.
1024:debug:main Skipping completed org.macports.fetch (eigen3)
1025:debug:main Privilege de-escalation not attempted as not running as root.
1026:debug:main Skipping completed org.macports.checksum (eigen3)
1027:debug:main Privilege de-escalation not attempted as not running as root.
1028:debug:main Skipping completed org.macports.extract (eigen3)
1029:debug:main Privilege de-escalation not attempted as not running as root.
1030:debug:main Skipping completed org.macports.patch (eigen3)
1031:debug:main Privilege de-escalation not attempted as not running as root.
1032:debug:configure configure phase started at Thu Jun 22 10:36:18 BST 2017
1033:notice:configure --->  Configuring eigen3
1034:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
1035:debug:configure Using compiler 'Xcode Clang'
1036:debug:configure Executing proc-pre-org.macports.configure-configure-0
1037:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
1038:debug:configure Executing proc-pre-org.macports.configure-configure-1
1039:debug:configure Executing proc-pre-org.macports.configure-configure-2
1040:debug:configure Executing proc-pre-org.macports.configure-configure-3
1041:debug:configure Executing org.macports.configure (eigen3)
1042:debug:configure Environment:
1043:debug:configure CC='/usr/bin/clang'
1044:debug:configure CC_PRINT_OPTIONS='YES'
1045:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
1046:debug:configure CFLAGS='-pipe -Os'
1047:debug:configure CPATH='/opt/local/include'
1048:debug:configure CPPFLAGS='-I/opt/local/include'
1049:debug:configure CXX='/usr/bin/clang++'
1050:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
1051:debug:configure F90FLAGS='-pipe -Os'
1052:debug:configure FCFLAGS='-pipe -Os'
1053:debug:configure FFLAGS='-pipe -Os'
1054:debug:configure INSTALL='/usr/bin/install -c'
1055:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
1056:debug:configure LIBRARY_PATH='/opt/local/lib'
1057:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
1058:debug:configure OBJC='/usr/bin/clang'
1059:debug:configure OBJCFLAGS='-pipe -Os'
1060:debug:configure OBJCXX='/usr/bin/clang++'
1061:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
1062:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
1063:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1064:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1065:info:configure sh: /bin/ps: Operation not permitted
1066:info:configure sh: /bin/ps: Operation not permitted
1067:info:configure -- Standard libraries to link to explicitly: none
1068:info:configure -- Found unsuitable Qt version "" from NOTFOUND
1069:info:configure sh: /bin/ps: Operation not permitted
1070:info:configure sh: /bin/ps: Operation not permitted
1071:info:configure sh: /bin/ps: Operation not permitted
1072:info:configure sh: /bin/ps: Operation not permitted
1073:info:configure -- The Fortran compiler identification is unknown
1074:info:configure sh: /bin/ps: Operation not permitted
1075:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
1076:info:configure -- Looking for BLAS -- mkl.h not found
1077:info:configure -- Looking for MKL BLAS: not found
1078:info:configure -- Looking for Goto BLAS: not found
1079:info:configure -- Looking for Open BLAS: not found
1080:info:configure -- Looking for Eigen BLAS: not found
1081:info:configure -- Looking for Eigen BLAS: not found
1082:info:configure -- Looking for Atlas BLAS: not found
1083:info:configure -- Looking for PhiPACK BLAS: not found
1084:info:configure -- Looking for CXML BLAS: not found
1085:info:configure -- Looking for DXML BLAS: not found
1086:info:configure -- Looking for SunPerf BLAS: not found
1087:info:configure -- Looking for SCSL BLAS: not found
1088:info:configure -- Looking for SGIMATH BLAS: not found
1089:info:configure -- Looking for IBM ESSL BLAS: not found
1090:info:configure -- Looking for IBM ESSL MT BLAS: not found
1091:info:configure -- Looking for ACML BLAS: not found
1092:info:configure -- Looking for ACML BLAS: not found
1093:info:configure -- Looking for ACML BLAS: not found
1094:info:configure -- Looking for Apple BLAS: not found
1095:info:configure -- Looking for NAS BLAS: not found
1096:info:configure -- Looking for Fortran sgemm
1097:info:configure -- Looking for Fortran sgemm - not found
1098:info:configure -- Looking for Generic BLAS: not found
1099:info:configure -- Looking for Generic BLAS: not found
1100:info:configure -- Looking for Generic BLAS: not found
1101:info:configure -- Looking for Generic BLAS: not found
1102:info:configure -- Looking for Generic BLAS: not found
1103:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
1104:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
1105:info:configure   check of symbols failed.
1106:info:configure   Please indicate where to find blas libraries.  You have three options:
1107:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
1108:info:configure   option: -DBLAS_DIR=your/path/to/blas
1109:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
1110:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
1111:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
1112:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
1113:info:configure   
1114:info:configure   To follow libraries detection more precisely you can activate a verbose
1115:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
1116:info:configure   You could also specify a BLAS vendor to look for by setting
1117:info:configure   -DBLA_VENDOR=blas_vendor_name.
1118:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
1119:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
1120:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
1121:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
1122:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
1123:info:configure Call Stack (most recent call first):
1124:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
1125:info:configure   test/CMakeLists.txt:30 (find_package)
1126:info:configure -- A library with BLAS API not found. Please specify library location.
1127:info:configure -- LAPACK requires BLAS.
1128:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
1129:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
1130:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
1131:info:configure -- Checking for one of the modules 'hwloc'
1132:info:configure -- Looking for Fortran sgemm
1133:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
1134:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
1135:info:configure   Failed to configure test project build system.
1136:info:configure Call Stack (most recent call first):
1137:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
1138:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
1139:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
1140:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
1141:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
1142:info:configure   test/CMakeLists.txt:83 (find_package)
1143:info:configure -- Configuring incomplete, errors occurred!
1144:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
1145:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
1146:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1147:info:configure Exit code: 1
1148:error:configure Failed to configure eigen3: configure failure: command execution failed
1149:debug:configure Error code: NONE
1150:debug:configure Backtrace: configure failure: command execution failed
1151:debug:configure     while executing
1152:debug:configure "$procedure $targetname"
1153:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
1154:debug:configure     while executing
1155:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
1156:debug:configure     invoked from within
1157:debug:configure "try -pass_signal {
1158:debug:configure             set cmd_path [macports::binaryInPath $prog]
1159:debug:configure             return $cmd_path
1160:debug:configure         } catch {{*} eCode eMessage} {
1161:debug:configure        ..."
1162:debug:configure     (procedure "macports::findBinary" line 5)
1163:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
1164version:1
1165:debug:main dropping privileges: euid changed to 503, egid changed to 501.
1166:debug:main Executing org.macports.main (eigen3)
1167:debug:main Privilege de-escalation not attempted as not running as root.
1168:debug:main Skipping completed org.macports.archivefetch (eigen3)
1169:debug:main Privilege de-escalation not attempted as not running as root.
1170:debug:main Skipping completed org.macports.fetch (eigen3)
1171:debug:main Privilege de-escalation not attempted as not running as root.
1172:debug:main Skipping completed org.macports.checksum (eigen3)
1173:debug:main Privilege de-escalation not attempted as not running as root.
1174:debug:main Skipping completed org.macports.extract (eigen3)
1175:debug:main Privilege de-escalation not attempted as not running as root.
1176:debug:main Skipping completed org.macports.patch (eigen3)
1177:debug:main Privilege de-escalation not attempted as not running as root.
1178:debug:configure configure phase started at Thu Jun 22 10:40:40 BST 2017
1179:notice:configure --->  Configuring eigen3
1180:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
1181:debug:configure Using compiler 'Xcode Clang'
1182:debug:configure Executing proc-pre-org.macports.configure-configure-0
1183:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
1184:debug:configure Executing proc-pre-org.macports.configure-configure-1
1185:debug:configure Executing proc-pre-org.macports.configure-configure-2
1186:debug:configure Executing proc-pre-org.macports.configure-configure-3
1187:debug:configure Executing org.macports.configure (eigen3)
1188:debug:configure Environment:
1189:debug:configure CC='/usr/bin/clang'
1190:debug:configure CC_PRINT_OPTIONS='YES'
1191:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
1192:debug:configure CFLAGS='-pipe -Os'
1193:debug:configure CPATH='/opt/local/include'
1194:debug:configure CPPFLAGS='-I/opt/local/include'
1195:debug:configure CXX='/usr/bin/clang++'
1196:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
1197:debug:configure F90FLAGS='-pipe -Os'
1198:debug:configure FCFLAGS='-pipe -Os'
1199:debug:configure FFLAGS='-pipe -Os'
1200:debug:configure INSTALL='/usr/bin/install -c'
1201:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
1202:debug:configure LIBRARY_PATH='/opt/local/lib'
1203:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
1204:debug:configure OBJC='/usr/bin/clang'
1205:debug:configure OBJCFLAGS='-pipe -Os'
1206:debug:configure OBJCXX='/usr/bin/clang++'
1207:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
1208:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
1209:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1210:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1211:info:configure sh: /bin/ps: Operation not permitted
1212:info:configure sh: /bin/ps: Operation not permitted
1213:info:configure -- Standard libraries to link to explicitly: none
1214:info:configure -- Found unsuitable Qt version "" from NOTFOUND
1215:info:configure sh: /bin/ps: Operation not permitted
1216:info:configure sh: /bin/ps: Operation not permitted
1217:info:configure sh: /bin/ps: Operation not permitted
1218:info:configure sh: /bin/ps: Operation not permitted
1219:info:configure -- The Fortran compiler identification is unknown
1220:info:configure sh: /bin/ps: Operation not permitted
1221:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
1222:info:configure -- Looking for BLAS -- mkl.h not found
1223:info:configure -- Looking for MKL BLAS: not found
1224:info:configure -- Looking for Goto BLAS: not found
1225:info:configure -- Looking for Open BLAS: not found
1226:info:configure -- Looking for Eigen BLAS: not found
1227:info:configure -- Looking for Eigen BLAS: not found
1228:info:configure -- Looking for Atlas BLAS: not found
1229:info:configure -- Looking for PhiPACK BLAS: not found
1230:info:configure -- Looking for CXML BLAS: not found
1231:info:configure -- Looking for DXML BLAS: not found
1232:info:configure -- Looking for SunPerf BLAS: not found
1233:info:configure -- Looking for SCSL BLAS: not found
1234:info:configure -- Looking for SGIMATH BLAS: not found
1235:info:configure -- Looking for IBM ESSL BLAS: not found
1236:info:configure -- Looking for IBM ESSL MT BLAS: not found
1237:info:configure -- Looking for ACML BLAS: not found
1238:info:configure -- Looking for ACML BLAS: not found
1239:info:configure -- Looking for ACML BLAS: not found
1240:info:configure -- Looking for Apple BLAS: not found
1241:info:configure -- Looking for NAS BLAS: not found
1242:info:configure -- Looking for Fortran sgemm
1243:info:configure -- Looking for Fortran sgemm - not found
1244:info:configure -- Looking for Generic BLAS: not found
1245:info:configure -- Looking for Generic BLAS: not found
1246:info:configure -- Looking for Generic BLAS: not found
1247:info:configure -- Looking for Generic BLAS: not found
1248:info:configure -- Looking for Generic BLAS: not found
1249:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
1250:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
1251:info:configure   check of symbols failed.
1252:info:configure   Please indicate where to find blas libraries.  You have three options:
1253:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
1254:info:configure   option: -DBLAS_DIR=your/path/to/blas
1255:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
1256:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
1257:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
1258:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
1259:info:configure   
1260:info:configure   To follow libraries detection more precisely you can activate a verbose
1261:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
1262:info:configure   You could also specify a BLAS vendor to look for by setting
1263:info:configure   -DBLA_VENDOR=blas_vendor_name.
1264:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
1265:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
1266:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
1267:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
1268:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
1269:info:configure Call Stack (most recent call first):
1270:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
1271:info:configure   test/CMakeLists.txt:30 (find_package)
1272:info:configure -- A library with BLAS API not found. Please specify library location.
1273:info:configure -- LAPACK requires BLAS.
1274:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
1275:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
1276:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
1277:info:configure -- Checking for one of the modules 'hwloc'
1278:info:configure -- Looking for Fortran sgemm
1279:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
1280:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
1281:info:configure   Failed to configure test project build system.
1282:info:configure Call Stack (most recent call first):
1283:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
1284:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
1285:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
1286:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
1287:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
1288:info:configure   test/CMakeLists.txt:83 (find_package)
1289:info:configure -- Configuring incomplete, errors occurred!
1290:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
1291:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
1292:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1293:info:configure Exit code: 1
1294:error:configure Failed to configure eigen3: configure failure: command execution failed
1295:debug:configure Error code: NONE
1296:debug:configure Backtrace: configure failure: command execution failed
1297:debug:configure     while executing
1298:debug:configure "$procedure $targetname"
1299:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
1300:debug:configure     while executing
1301:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
1302:debug:configure     invoked from within
1303:debug:configure "try -pass_signal {
1304:debug:configure             set cmd_path [macports::binaryInPath $prog]
1305:debug:configure             return $cmd_path
1306:debug:configure         } catch {{*} eCode eMessage} {
1307:debug:configure        ..."
1308:debug:configure     (procedure "macports::findBinary" line 5)
1309:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.
1310version:1
1311:debug:main dropping privileges: euid changed to 503, egid changed to 501.
1312:debug:main Executing org.macports.main (eigen3)
1313:debug:main Privilege de-escalation not attempted as not running as root.
1314:debug:main Skipping completed org.macports.archivefetch (eigen3)
1315:debug:main Privilege de-escalation not attempted as not running as root.
1316:debug:main Skipping completed org.macports.fetch (eigen3)
1317:debug:main Privilege de-escalation not attempted as not running as root.
1318:debug:main Skipping completed org.macports.checksum (eigen3)
1319:debug:main Privilege de-escalation not attempted as not running as root.
1320:debug:main Skipping completed org.macports.extract (eigen3)
1321:debug:main Privilege de-escalation not attempted as not running as root.
1322:debug:main Skipping completed org.macports.patch (eigen3)
1323:debug:main Privilege de-escalation not attempted as not running as root.
1324:debug:configure configure phase started at Thu Jun 22 10:45:56 BST 2017
1325:notice:configure --->  Configuring eigen3
1326:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
1327:debug:configure Using compiler 'Xcode Clang'
1328:debug:configure Executing proc-pre-org.macports.configure-configure-0
1329:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: cmake pkgconfig
1330:debug:configure Executing proc-pre-org.macports.configure-configure-1
1331:debug:configure Executing proc-pre-org.macports.configure-configure-2
1332:debug:configure Executing proc-pre-org.macports.configure-configure-3
1333:debug:configure Executing org.macports.configure (eigen3)
1334:debug:configure Environment:
1335:debug:configure CC='/usr/bin/clang'
1336:debug:configure CC_PRINT_OPTIONS='YES'
1337:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/.CC_PRINT_OPTIONS'
1338:debug:configure CFLAGS='-pipe -Os'
1339:debug:configure CPATH='/opt/local/include'
1340:debug:configure CPPFLAGS='-I/opt/local/include'
1341:debug:configure CXX='/usr/bin/clang++'
1342:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++'
1343:debug:configure F90FLAGS='-pipe -Os'
1344:debug:configure FCFLAGS='-pipe -Os'
1345:debug:configure FFLAGS='-pipe -Os'
1346:debug:configure INSTALL='/usr/bin/install -c'
1347:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
1348:debug:configure LIBRARY_PATH='/opt/local/lib'
1349:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
1350:debug:configure OBJC='/usr/bin/clang'
1351:debug:configure OBJCFLAGS='-pipe -Os'
1352:debug:configure OBJCXX='/usr/bin/clang++'
1353:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++'
1354:debug:configure PKG_CONFIG_LIBDIR='/opt/local/lib/pkgconfig'
1355:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1356:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1357:info:configure sh: /bin/ps: Operation not permitted
1358:info:configure sh: /bin/ps: Operation not permitted
1359:info:configure -- Standard libraries to link to explicitly: none
1360:info:configure -- Found unsuitable Qt version "" from NOTFOUND
1361:info:configure sh: /bin/ps: Operation not permitted
1362:info:configure sh: /bin/ps: Operation not permitted
1363:info:configure sh: /bin/ps: Operation not permitted
1364:info:configure sh: /bin/ps: Operation not permitted
1365:info:configure -- The Fortran compiler identification is unknown
1366:info:configure sh: /bin/ps: Operation not permitted
1367:info:configure -- A cache variable, namely BLAS_DIR, has been set to specify the install directory of BLAS
1368:info:configure -- Looking for BLAS -- mkl.h not found
1369:info:configure -- Looking for MKL BLAS: not found
1370:info:configure -- Looking for Goto BLAS: not found
1371:info:configure -- Looking for Open BLAS: not found
1372:info:configure -- Looking for Eigen BLAS: not found
1373:info:configure -- Looking for Eigen BLAS: not found
1374:info:configure -- Looking for Atlas BLAS: not found
1375:info:configure -- Looking for PhiPACK BLAS: not found
1376:info:configure -- Looking for CXML BLAS: not found
1377:info:configure -- Looking for DXML BLAS: not found
1378:info:configure -- Looking for SunPerf BLAS: not found
1379:info:configure -- Looking for SCSL BLAS: not found
1380:info:configure -- Looking for SGIMATH BLAS: not found
1381:info:configure -- Looking for IBM ESSL BLAS: not found
1382:info:configure -- Looking for IBM ESSL MT BLAS: not found
1383:info:configure -- Looking for ACML BLAS: not found
1384:info:configure -- Looking for ACML BLAS: not found
1385:info:configure -- Looking for ACML BLAS: not found
1386:info:configure -- Looking for Apple BLAS: not found
1387:info:configure -- Looking for NAS BLAS: not found
1388:info:configure -- Looking for Fortran sgemm
1389:info:configure -- Looking for Fortran sgemm - not found
1390:info:configure -- Looking for Generic BLAS: not found
1391:info:configure -- Looking for Generic BLAS: not found
1392:info:configure -- Looking for Generic BLAS: not found
1393:info:configure -- Looking for Generic BLAS: not found
1394:info:configure -- Looking for Generic BLAS: not found
1395:info:configure CMake Warning at cmake/FindBLAS.cmake:1371 (message):
1396:info:configure   BLA_VENDOR has been set to All but blas libraries could not be found or
1397:info:configure   check of symbols failed.
1398:info:configure   Please indicate where to find blas libraries.  You have three options:
1399:info:configure   - Option 1: Provide the installation directory of BLAS library with cmake
1400:info:configure   option: -DBLAS_DIR=your/path/to/blas
1401:info:configure   - Option 2: Provide the directory where to find BLAS libraries with cmake
1402:info:configure   option: -DBLAS_LIBDIR=your/path/to/blas/libs
1403:info:configure   - Option 3: Update your environment variable (Linux: LD_LIBRARY_PATH,
1404:info:configure   Windows: LIB, Mac: DYLD_LIBRARY_PATH)
1405:info:configure   
1406:info:configure   To follow libraries detection more precisely you can activate a verbose
1407:info:configure   mode with -DBLAS_VERBOSE=ON at cmake configure.
1408:info:configure   You could also specify a BLAS vendor to look for by setting
1409:info:configure   -DBLA_VENDOR=blas_vendor_name.
1410:info:configure   List of possible BLAS vendor: Goto, ATLAS PhiPACK, CXML, DXML, SunPerf,
1411:info:configure   SCSL, SGIMATH, IBMESSL, Intel10_32 (intel mkl v10 32 bit),Intel10_64lp
1412:info:configure   (intel mkl v10 64 bit, lp thread model, lp64 model), Intel10_64lp_seq
1413:info:configure   (intel mkl v10 64 bit, sequential code, lp64 model),Intel( older versions
1414:info:configure   of mkl 32 and 64 bit), ACML, ACML_MP, ACML_GPU, Apple, NAS, Generic
1415:info:configure Call Stack (most recent call first):
1416:info:configure   cmake/FindLAPACK.cmake:138 (find_package)
1417:info:configure   test/CMakeLists.txt:30 (find_package)
1418:info:configure -- A library with BLAS API not found. Please specify library location.
1419:info:configure -- LAPACK requires BLAS.
1420:info:configure -- Could NOT find CHOLMOD (missing:  CHOLMOD_INCLUDES CHOLMOD_LIBRARIES)
1421:info:configure -- Could NOT find UMFPACK (missing:  UMFPACK_INCLUDES UMFPACK_LIBRARIES)
1422:info:configure -- Could NOT find SUPERLU (missing:  SUPERLU_INCLUDES SUPERLU_LIBRARIES SUPERLU_VERSION_OK)
1423:info:configure -- Checking for one of the modules 'hwloc'
1424:info:configure -- Looking for Fortran sgemm
1425:info:configure CMake Error: CMAKE_Fortran_COMPILER not set, after EnableLanguage
1426:info:configure CMake Error at /opt/local/share/cmake-3.8/Modules/CheckFortranFunctionExists.cmake:45 (try_compile):
1427:info:configure   Failed to configure test project build system.
1428:info:configure Call Stack (most recent call first):
1429:info:configure   cmake/FindBLAS.cmake:297 (check_fortran_function_exists)
1430:info:configure   cmake/FindBLAS.cmake:1297 (check_fortran_libraries)
1431:info:configure   cmake/FindBLASEXT.cmake:53 (find_package)
1432:info:configure   cmake/FindBLASEXT.cmake:86 (find_package_blas)
1433:info:configure   cmake/FindPASTIX.cmake:214 (find_package)
1434:info:configure   test/CMakeLists.txt:83 (find_package)
1435:info:configure -- Configuring incomplete, errors occurred!
1436:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeOutput.log".
1437:info:configure See also "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build/CMakeFiles/CMakeError.log".
1438:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/build" && /opt/local/bin/cmake -DCMAKE_INSTALL_PREFIX='/opt/local' -DCMAKE_BUILD_TYPE=Release -DCMAKE_BUILD_WITH_INSTALL_RPATH=ON -DCMAKE_C_COMPILER="$CC" -DCMAKE_COLOR_MAKEFILE=ON -DCMAKE_CXX_COMPILER="$CXX" -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_INSTALL_NAME_DIR=/opt/local/lib -DCMAKE_INSTALL_RPATH=/opt/local/lib -DCMAKE_MODULE_PATH=/opt/local/share/cmake/Modules -DCMAKE_SYSTEM_PREFIX_PATH="/opt/local;/usr" -DCMAKE_VERBOSE_MAKEFILE=ON -Wno-dev -DCMAKE_C_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_CXX_FLAGS_RELEASE="-DNDEBUG" -DCMAKE_OSX_ARCHITECTURES="" -DCMAKE_OSX_DEPLOYMENT_TARGET="10.12" -DCMAKE_OSX_SYSROOT="/" /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/work/3.3.4
1439:info:configure Exit code: 1
1440:error:configure Failed to configure eigen3: configure failure: command execution failed
1441:debug:configure Error code: NONE
1442:debug:configure Backtrace: configure failure: command execution failed
1443:debug:configure     while executing
1444:debug:configure "$procedure $targetname"
1445:debug:configure Failed to locate 'lbzip2' in path: '/opt/local/bin:/opt/local/sbin:/bin:/sbin:/usr/bin:/usr/sbin' or at its MacPorts configuration time location, did you move it?
1446:debug:configure     while executing
1447:debug:configure "error "$eMessage or at its MacPorts configuration time location, did you move it?""
1448:debug:configure     invoked from within
1449:debug:configure "try -pass_signal {
1450:debug:configure             set cmd_path [macports::binaryInPath $prog]
1451:debug:configure             return $cmd_path
1452:debug:configure         } catch {{*} eCode eMessage} {
1453:debug:configure        ..."
1454:debug:configure     (procedure "macports::findBinary" line 5)
1455:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_eigen3/eigen3/main.log for details.