| 1 | version:1 |
|---|
| 2 | :debug:main epoch: in tree: 0 installed: 0 |
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| 3 | :debug:main py27-sphinx 1.6.3_0 exists in the ports tree |
|---|
| 4 | :debug:main py27-sphinx 1.6.3_0 is the latest installed |
|---|
| 5 | :debug:main py27-sphinx 1.6.3_0 is active |
|---|
| 6 | :debug:main Merging existing variants '' into variants |
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| 7 | :debug:main new fully merged portvariants: |
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| 8 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-sphinx |
|---|
| 9 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 10 | :debug:main Re-registering default for build.cmd |
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| 11 | :debug:main Re-registering default for destroot.cmd |
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| 12 | :debug:main Re-registering default for destroot.destdir |
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| 13 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 14 | :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl |
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| 15 | :debug:main only one arch supported, so not adding the default universal variant |
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| 16 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 17 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 18 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 19 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 20 | :debug:main No need to upgrade! py27-sphinx 1.6.3_0 >= py27-sphinx 1.6.3_0 |
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| 21 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 22 | :debug:main py27-docutils 0.13.1_0 exists in the ports tree |
|---|
| 23 | :debug:main py27-docutils 0.13.1_0 is the latest installed |
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| 24 | :debug:main py27-docutils 0.13.1_0 is active |
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| 25 | :debug:main Merging existing variants '' into variants |
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| 26 | :debug:main new fully merged portvariants: |
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| 27 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-docutils |
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| 28 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
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| 29 | :debug:main Re-registering default for build.cmd |
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| 30 | :debug:main Re-registering default for destroot.cmd |
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| 31 | :debug:main Re-registering default for destroot.destdir |
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| 32 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
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| 33 | :debug:main only one arch supported, so not adding the default universal variant |
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| 34 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 35 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 36 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 37 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 38 | :debug:main No need to upgrade! py27-docutils 0.13.1_0 >= py27-docutils 0.13.1_0 |
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| 39 | :debug:main epoch: in tree: 0 installed: 0 |
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| 40 | :debug:main py27-roman 2.0.0_0 exists in the ports tree |
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| 41 | :debug:main py27-roman 2.0.0_0 is the latest installed |
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| 42 | :debug:main py27-roman 2.0.0_0 is active |
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| 43 | :debug:main Merging existing variants '' into variants |
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| 44 | :debug:main new fully merged portvariants: |
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| 45 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-roman |
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| 46 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 47 | :debug:main Re-registering default for build.cmd |
|---|
| 48 | :debug:main Re-registering default for destroot.cmd |
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| 49 | :debug:main Re-registering default for destroot.destdir |
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| 50 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
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| 51 | :debug:main only one arch supported, so not adding the default universal variant |
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| 52 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 53 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 54 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 55 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 56 | :debug:main No need to upgrade! py27-roman 2.0.0_0 >= py27-roman 2.0.0_0 |
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| 57 | :debug:main epoch: in tree: 2 installed: 2 |
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| 58 | :debug:main python27 2.7.13_1 exists in the ports tree |
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| 59 | :debug:main python27 2.7.13_1 is the latest installed |
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| 60 | :debug:main python27 2.7.13_1 is active |
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| 61 | :debug:main Merging existing variants '' into variants |
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| 62 | :debug:main new fully merged portvariants: |
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| 63 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/python27 |
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| 64 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
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| 65 | :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl |
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| 66 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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| 67 | :debug:main universal variant already exists, so not adding the default one |
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| 68 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 69 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 70 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 71 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 72 | :debug:main No need to upgrade! python27 2.7.13_1 >= python27 2.7.13_1 |
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| 73 | :debug:main epoch: in tree: 2 installed: 2 |
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| 74 | :debug:main gettext 0.19.8.1_0 exists in the ports tree |
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| 75 | :debug:main gettext 0.19.8.1_0 is the latest installed |
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| 76 | :debug:main gettext 0.19.8.1_0 is active |
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| 77 | :debug:main Merging existing variants '' into variants |
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| 78 | :debug:main new fully merged portvariants: |
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| 79 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/gettext |
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| 80 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
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| 81 | :debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl |
|---|
| 82 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 83 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 84 | :debug:main compiler clang 802.0.42 not blacklisted because it doesn't match {clang < 211.10.1} |
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| 85 | :debug:main universal variant already exists, so not adding the default one |
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| 86 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 87 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 88 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 89 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 90 | :debug:main No need to upgrade! gettext 0.19.8.1_0 >= gettext 0.19.8.1_0 |
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| 91 | :debug:main epoch: in tree: 0 installed: 0 |
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| 92 | :debug:main expat 2.2.4_0 exists in the ports tree |
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| 93 | :debug:main expat 2.2.4_0 is the latest installed |
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| 94 | :debug:main expat 2.2.4_0 is active |
|---|
| 95 | :debug:main Merging existing variants '' into variants |
|---|
| 96 | :debug:main new fully merged portvariants: |
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| 97 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/expat |
|---|
| 98 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
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| 99 | :debug:main adding the default universal variant |
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| 100 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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| 101 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 102 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 103 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 104 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 105 | :debug:main No need to upgrade! expat 2.2.4_0 >= expat 2.2.4_0 |
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| 106 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 107 | :debug:main libiconv 1.15_0 exists in the ports tree |
|---|
| 108 | :debug:main libiconv 1.15_0 is the latest installed |
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| 109 | :debug:main libiconv 1.15_0 is active |
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| 110 | :debug:main Merging existing variants '' into variants |
|---|
| 111 | :debug:main new fully merged portvariants: |
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| 112 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/libiconv |
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| 113 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 114 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 115 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 116 | :debug:main universal variant already exists, so not adding the default one |
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| 117 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 118 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 119 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 120 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 121 | :debug:main No need to upgrade! libiconv 1.15_0 >= libiconv 1.15_0 |
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| 122 | :debug:main epoch: in tree: 0 installed: 0 |
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| 123 | :debug:main ncurses 6.0-20170708_0 exists in the ports tree |
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| 124 | :debug:main ncurses 6.0-20170708_0 is the latest installed |
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| 125 | :debug:main ncurses 6.0-20170708_0 is active |
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| 126 | :debug:main Merging existing variants '' into variants |
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| 127 | :debug:main new fully merged portvariants: |
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| 128 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/ncurses |
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| 129 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
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| 130 | :debug:main adding the default universal variant |
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| 131 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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| 132 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 133 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 134 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 135 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 136 | :debug:main No need to upgrade! ncurses 6.0-20170708_0 >= ncurses 6.0-20170708_0 |
|---|
| 137 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 138 | :debug:main zlib 1.2.11_0 exists in the ports tree |
|---|
| 139 | :debug:main zlib 1.2.11_0 is the latest installed |
|---|
| 140 | :debug:main zlib 1.2.11_0 is active |
|---|
| 141 | :debug:main Merging existing variants '' into variants |
|---|
| 142 | :debug:main new fully merged portvariants: |
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| 143 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/zlib |
|---|
| 144 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 145 | :debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl |
|---|
| 146 | :debug:main adding the default universal variant |
|---|
| 147 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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| 148 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 149 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 150 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 151 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 152 | :debug:main No need to upgrade! zlib 1.2.11_0 >= zlib 1.2.11_0 |
|---|
| 153 | :debug:main epoch: in tree: 1 installed: 1 |
|---|
| 154 | :debug:main openssl 1.0.2l_0 exists in the ports tree |
|---|
| 155 | :debug:main openssl 1.0.2l_0 is the latest installed |
|---|
| 156 | :debug:main openssl 1.0.2l_0 is active |
|---|
| 157 | :debug:main Merging existing variants '' into variants |
|---|
| 158 | :debug:main new fully merged portvariants: |
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| 159 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/openssl |
|---|
| 160 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 161 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 162 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 163 | :debug:main universal variant already exists, so not adding the default one |
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| 164 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 165 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 166 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 167 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 168 | :debug:main No need to upgrade! openssl 1.0.2l_0 >= openssl 1.0.2l_0 |
|---|
| 169 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 170 | :debug:main sqlite3 3.20.1_0 exists in the ports tree |
|---|
| 171 | :debug:main sqlite3 3.20.1_0 is the latest installed |
|---|
| 172 | :debug:main sqlite3 3.20.1_0 is active |
|---|
| 173 | :debug:main Merging existing variants '' into variants |
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| 174 | :debug:main new fully merged portvariants: |
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| 175 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/databases/sqlite3 |
|---|
| 176 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 177 | :debug:main adding the default universal variant |
|---|
| 178 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
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| 179 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 180 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 181 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 182 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 183 | :debug:main No need to upgrade! sqlite3 3.20.1_0 >= sqlite3 3.20.1_0 |
|---|
| 184 | :debug:main epoch: in tree: 20090923 installed: 20090923 |
|---|
| 185 | :debug:main libedit 20170329-3.1_0 exists in the ports tree |
|---|
| 186 | :debug:main libedit 20170329-3.1_0 is the latest installed |
|---|
| 187 | :debug:main libedit 20170329-3.1_0 is active |
|---|
| 188 | :debug:main Merging existing variants '' into variants |
|---|
| 189 | :debug:main new fully merged portvariants: |
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| 190 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/libedit |
|---|
| 191 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 192 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 193 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 194 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 195 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 196 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 197 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 198 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 199 | :debug:main No need to upgrade! libedit 20170329-3.1_0 >= libedit 20170329-3.1_0 |
|---|
| 200 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 201 | :debug:main db48 4.8.30_4 exists in the ports tree |
|---|
| 202 | :debug:main db48 4.8.30_4 is the latest installed |
|---|
| 203 | :debug:main db48 4.8.30_4 is active |
|---|
| 204 | :debug:main Merging existing variants '' into variants |
|---|
| 205 | :debug:main new fully merged portvariants: |
|---|
| 206 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/databases/db48 |
|---|
| 207 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 208 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 209 | :debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl |
|---|
| 210 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 211 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 212 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 213 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 214 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 215 | :debug:main No need to upgrade! db48 4.8.30_4 >= db48 4.8.30_4 |
|---|
| 216 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 217 | :debug:main bzip2 1.0.6_0 exists in the ports tree |
|---|
| 218 | :debug:main bzip2 1.0.6_0 is the latest installed |
|---|
| 219 | :debug:main bzip2 1.0.6_0 is active |
|---|
| 220 | :debug:main Merging existing variants '' into variants |
|---|
| 221 | :debug:main new fully merged portvariants: |
|---|
| 222 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/bzip2 |
|---|
| 223 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 224 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 225 | :debug:main universal variant already exists, so not adding the default one |
|---|
| 226 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 227 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 228 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 229 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 230 | :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0 |
|---|
| 231 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 232 | :debug:main python_select 0.3_7 exists in the ports tree |
|---|
| 233 | :debug:main python_select 0.3_7 is the latest installed |
|---|
| 234 | :debug:main python_select 0.3_7 is active |
|---|
| 235 | :debug:main Merging existing variants '' into variants |
|---|
| 236 | :debug:main new fully merged portvariants: |
|---|
| 237 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/python_select |
|---|
| 238 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 239 | :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl |
|---|
| 240 | :debug:main universal_variant is false, so not adding the default universal variant |
|---|
| 241 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 242 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 243 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 244 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 245 | :debug:main No need to upgrade! python_select 0.3_7 >= python_select 0.3_7 |
|---|
| 246 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 247 | :debug:main python2_select 0.0_2 exists in the ports tree |
|---|
| 248 | :debug:main python2_select 0.0_2 is the latest installed |
|---|
| 249 | :debug:main python2_select 0.0_2 is active |
|---|
| 250 | :debug:main Merging existing variants '' into variants |
|---|
| 251 | :debug:main new fully merged portvariants: |
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| 252 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/python2_select |
|---|
| 253 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 254 | :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl |
|---|
| 255 | :debug:main universal_variant is false, so not adding the default universal variant |
|---|
| 256 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 257 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 258 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 259 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 260 | :debug:main No need to upgrade! python2_select 0.0_2 >= python2_select 0.0_2 |
|---|
| 261 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 262 | :debug:main py27-setuptools 36.2.7_0 exists in the ports tree |
|---|
| 263 | :debug:main py27-setuptools 36.2.7_0 is the latest installed |
|---|
| 264 | :debug:main py27-setuptools 36.2.7_0 is active |
|---|
| 265 | :debug:main Merging existing variants '' into variants |
|---|
| 266 | :debug:main new fully merged portvariants: |
|---|
| 267 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-setuptools |
|---|
| 268 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 269 | :debug:main Re-registering default for build.cmd |
|---|
| 270 | :debug:main Re-registering default for destroot.cmd |
|---|
| 271 | :debug:main Re-registering default for destroot.destdir |
|---|
| 272 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 273 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 274 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 275 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 276 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 277 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 278 | :debug:main No need to upgrade! py27-setuptools 36.2.7_0 >= py27-setuptools 36.2.7_0 |
|---|
| 279 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 280 | :debug:main py27-alabaster 0.7.6_0 exists in the ports tree |
|---|
| 281 | :debug:main py27-alabaster 0.7.6_0 is the latest installed |
|---|
| 282 | :debug:main py27-alabaster 0.7.6_0 is active |
|---|
| 283 | :debug:main Merging existing variants '' into variants |
|---|
| 284 | :debug:main new fully merged portvariants: |
|---|
| 285 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-alabaster |
|---|
| 286 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 287 | :debug:main Re-registering default for build.cmd |
|---|
| 288 | :debug:main Re-registering default for destroot.cmd |
|---|
| 289 | :debug:main Re-registering default for destroot.destdir |
|---|
| 290 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 291 | :debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl |
|---|
| 292 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 293 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
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| 294 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 295 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 296 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 297 | :debug:main No need to upgrade! py27-alabaster 0.7.6_0 >= py27-alabaster 0.7.6_0 |
|---|
| 298 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 299 | :debug:main py27-babel 2.5.0_0 exists in the ports tree |
|---|
| 300 | :debug:main py27-babel 2.5.0_0 is the latest installed |
|---|
| 301 | :debug:main py27-babel 2.5.0_0 is active |
|---|
| 302 | :debug:main Merging existing variants '' into variants |
|---|
| 303 | :debug:main new fully merged portvariants: |
|---|
| 304 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-babel |
|---|
| 305 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 306 | :debug:main Re-registering default for build.cmd |
|---|
| 307 | :debug:main Re-registering default for destroot.cmd |
|---|
| 308 | :debug:main Re-registering default for destroot.destdir |
|---|
| 309 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 310 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 311 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 312 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 313 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 314 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 315 | :debug:main No need to upgrade! py27-babel 2.5.0_0 >= py27-babel 2.5.0_0 |
|---|
| 316 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 317 | :debug:main py27-tz 2017.2_0 exists in the ports tree |
|---|
| 318 | :debug:main py27-tz 2017.2_0 is the latest installed |
|---|
| 319 | :debug:main py27-tz 2017.2_0 is active |
|---|
| 320 | :debug:main Merging existing variants '' into variants |
|---|
| 321 | :debug:main new fully merged portvariants: |
|---|
| 322 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-tz |
|---|
| 323 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 324 | :debug:main Re-registering default for build.cmd |
|---|
| 325 | :debug:main Re-registering default for destroot.cmd |
|---|
| 326 | :debug:main Re-registering default for destroot.destdir |
|---|
| 327 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 328 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 329 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 330 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 331 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 332 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 333 | :debug:main No need to upgrade! py27-tz 2017.2_0 >= py27-tz 2017.2_0 |
|---|
| 334 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 335 | :debug:main py27-imagesize 0.7.1_0 exists in the ports tree |
|---|
| 336 | :debug:main py27-imagesize 0.7.1_0 is the latest installed |
|---|
| 337 | :debug:main py27-imagesize 0.7.1_0 is active |
|---|
| 338 | :debug:main Merging existing variants '' into variants |
|---|
| 339 | :debug:main new fully merged portvariants: |
|---|
| 340 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-imagesize |
|---|
| 341 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 342 | :debug:main Re-registering default for build.cmd |
|---|
| 343 | :debug:main Re-registering default for destroot.cmd |
|---|
| 344 | :debug:main Re-registering default for destroot.destdir |
|---|
| 345 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 346 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 347 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 348 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 349 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 350 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 351 | :debug:main No need to upgrade! py27-imagesize 0.7.1_0 >= py27-imagesize 0.7.1_0 |
|---|
| 352 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 353 | :debug:main py27-jinja2 2.9.6_0 exists in the ports tree |
|---|
| 354 | :debug:main py27-jinja2 2.9.6_0 is the latest installed |
|---|
| 355 | :debug:main py27-jinja2 2.9.6_0 is active |
|---|
| 356 | :debug:main Merging existing variants '' into variants |
|---|
| 357 | :debug:main new fully merged portvariants: |
|---|
| 358 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-jinja2 |
|---|
| 359 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 360 | :debug:main Re-registering default for build.cmd |
|---|
| 361 | :debug:main Re-registering default for destroot.cmd |
|---|
| 362 | :debug:main Re-registering default for destroot.destdir |
|---|
| 363 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 364 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 365 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 366 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 367 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 368 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 369 | :debug:main No need to upgrade! py27-jinja2 2.9.6_0 >= py27-jinja2 2.9.6_0 |
|---|
| 370 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 371 | :debug:main py27-markupsafe 0.23_0 exists in the ports tree |
|---|
| 372 | :debug:main py27-markupsafe 0.23_0 is the latest installed |
|---|
| 373 | :debug:main py27-markupsafe 0.23_0 is active |
|---|
| 374 | :debug:main Merging existing variants '' into variants |
|---|
| 375 | :debug:main new fully merged portvariants: |
|---|
| 376 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-markupsafe |
|---|
| 377 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 378 | :debug:main Re-registering default for build.cmd |
|---|
| 379 | :debug:main Re-registering default for destroot.cmd |
|---|
| 380 | :debug:main Re-registering default for destroot.destdir |
|---|
| 381 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 382 | :debug:main adding the default universal variant |
|---|
| 383 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 384 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 385 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 386 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 387 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 388 | :debug:main No need to upgrade! py27-markupsafe 0.23_0 >= py27-markupsafe 0.23_0 |
|---|
| 389 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 390 | :debug:main py27-pygments 2.2.0_0 exists in the ports tree |
|---|
| 391 | :debug:main py27-pygments 2.2.0_0 is the latest installed |
|---|
| 392 | :debug:main py27-pygments 2.2.0_0 is active |
|---|
| 393 | :debug:main Merging existing variants '' into variants |
|---|
| 394 | :debug:main new fully merged portvariants: |
|---|
| 395 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-pygments |
|---|
| 396 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 397 | :debug:main Re-registering default for build.cmd |
|---|
| 398 | :debug:main Re-registering default for destroot.cmd |
|---|
| 399 | :debug:main Re-registering default for destroot.destdir |
|---|
| 400 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 401 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 402 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 403 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 404 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 405 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 406 | :debug:main No need to upgrade! py27-pygments 2.2.0_0 >= py27-pygments 2.2.0_0 |
|---|
| 407 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 408 | :debug:main py27-requests 2.18.4_0 exists in the ports tree |
|---|
| 409 | :debug:main py27-requests 2.18.4_0 is the latest installed |
|---|
| 410 | :debug:main py27-requests 2.18.4_0 is active |
|---|
| 411 | :debug:main Merging existing variants '' into variants |
|---|
| 412 | :debug:main new fully merged portvariants: |
|---|
| 413 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-requests |
|---|
| 414 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 415 | :debug:main Re-registering default for build.cmd |
|---|
| 416 | :debug:main Re-registering default for destroot.cmd |
|---|
| 417 | :debug:main Re-registering default for destroot.destdir |
|---|
| 418 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 419 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 420 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 421 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 422 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 423 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 424 | :debug:main No need to upgrade! py27-requests 2.18.4_0 >= py27-requests 2.18.4_0 |
|---|
| 425 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 426 | :debug:main py27-chardet 3.0.2_0 exists in the ports tree |
|---|
| 427 | :debug:main py27-chardet 3.0.2_0 is the latest installed |
|---|
| 428 | :debug:main py27-chardet 3.0.2_0 is active |
|---|
| 429 | :debug:main Merging existing variants '' into variants |
|---|
| 430 | :debug:main new fully merged portvariants: |
|---|
| 431 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-chardet |
|---|
| 432 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 433 | :debug:main Re-registering default for build.cmd |
|---|
| 434 | :debug:main Re-registering default for destroot.cmd |
|---|
| 435 | :debug:main Re-registering default for destroot.destdir |
|---|
| 436 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 437 | :debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl |
|---|
| 438 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 439 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 440 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 441 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 442 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 443 | :debug:main No need to upgrade! py27-chardet 3.0.2_0 >= py27-chardet 3.0.2_0 |
|---|
| 444 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 445 | :debug:main py27-idna 2.6_0 exists in the ports tree |
|---|
| 446 | :debug:main py27-idna 2.6_0 is the latest installed |
|---|
| 447 | :debug:main py27-idna 2.6_0 is active |
|---|
| 448 | :debug:main Merging existing variants '' into variants |
|---|
| 449 | :debug:main new fully merged portvariants: |
|---|
| 450 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-idna |
|---|
| 451 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 452 | :debug:main Re-registering default for build.cmd |
|---|
| 453 | :debug:main Re-registering default for destroot.cmd |
|---|
| 454 | :debug:main Re-registering default for destroot.destdir |
|---|
| 455 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 456 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 457 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 458 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 459 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 460 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 461 | :debug:main No need to upgrade! py27-idna 2.6_0 >= py27-idna 2.6_0 |
|---|
| 462 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 463 | :debug:main py27-urllib3 1.22_0 exists in the ports tree |
|---|
| 464 | :debug:main py27-urllib3 1.22_0 is the latest installed |
|---|
| 465 | :debug:main py27-urllib3 1.22_0 is active |
|---|
| 466 | :debug:main Merging existing variants '' into variants |
|---|
| 467 | :debug:main new fully merged portvariants: |
|---|
| 468 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-urllib3 |
|---|
| 469 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 470 | :debug:main Re-registering default for build.cmd |
|---|
| 471 | :debug:main Re-registering default for destroot.cmd |
|---|
| 472 | :debug:main Re-registering default for destroot.destdir |
|---|
| 473 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 474 | :debug:main adding the default universal variant |
|---|
| 475 | :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 476 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 477 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 478 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 479 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 480 | :debug:main No need to upgrade! py27-urllib3 1.22_0 >= py27-urllib3 1.22_0 |
|---|
| 481 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 482 | :debug:main py27-certifi 2017.07.27_0 exists in the ports tree |
|---|
| 483 | :debug:main py27-certifi 2017.07.27_0 is the latest installed |
|---|
| 484 | :debug:main py27-certifi 2017.07.27_0 is active |
|---|
| 485 | :debug:main Merging existing variants '' into variants |
|---|
| 486 | :debug:main new fully merged portvariants: |
|---|
| 487 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-certifi |
|---|
| 488 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 489 | :debug:main Re-registering default for build.cmd |
|---|
| 490 | :debug:main Re-registering default for destroot.cmd |
|---|
| 491 | :debug:main Re-registering default for destroot.destdir |
|---|
| 492 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 493 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 494 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 495 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 496 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 497 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 498 | :debug:main No need to upgrade! py27-certifi 2017.07.27_0 >= py27-certifi 2017.07.27_0 |
|---|
| 499 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 500 | :debug:main py27-six 1.10.0_0 exists in the ports tree |
|---|
| 501 | :debug:main py27-six 1.10.0_0 is the latest installed |
|---|
| 502 | :debug:main py27-six 1.10.0_0 is active |
|---|
| 503 | :debug:main Merging existing variants '' into variants |
|---|
| 504 | :debug:main new fully merged portvariants: |
|---|
| 505 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-six |
|---|
| 506 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 507 | :debug:main Re-registering default for build.cmd |
|---|
| 508 | :debug:main Re-registering default for destroot.cmd |
|---|
| 509 | :debug:main Re-registering default for destroot.destdir |
|---|
| 510 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 511 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 512 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 513 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 514 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 515 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 516 | :debug:main No need to upgrade! py27-six 1.10.0_0 >= py27-six 1.10.0_0 |
|---|
| 517 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 518 | :debug:main py27-snowballstemmer 1.2.0_0 exists in the ports tree |
|---|
| 519 | :debug:main py27-snowballstemmer 1.2.0_0 is the latest installed |
|---|
| 520 | :debug:main py27-snowballstemmer 1.2.0_0 is active |
|---|
| 521 | :debug:main Merging existing variants '' into variants |
|---|
| 522 | :debug:main new fully merged portvariants: |
|---|
| 523 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-snowballstemmer |
|---|
| 524 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 525 | :debug:main Re-registering default for build.cmd |
|---|
| 526 | :debug:main Re-registering default for destroot.cmd |
|---|
| 527 | :debug:main Re-registering default for destroot.destdir |
|---|
| 528 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 529 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 530 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 531 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 532 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 533 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 534 | :debug:main No need to upgrade! py27-snowballstemmer 1.2.0_0 >= py27-snowballstemmer 1.2.0_0 |
|---|
| 535 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 536 | :debug:main py27-sphinxcontrib-websupport 1.0.1_0 exists in the ports tree |
|---|
| 537 | :debug:main py27-sphinxcontrib-websupport 1.0.1_0 is the latest installed |
|---|
| 538 | :debug:main py27-sphinxcontrib-websupport 1.0.1_0 is active |
|---|
| 539 | :debug:main Merging existing variants '' into variants |
|---|
| 540 | :debug:main new fully merged portvariants: |
|---|
| 541 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-sphinxcontrib-websupport |
|---|
| 542 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 543 | :debug:main Re-registering default for build.cmd |
|---|
| 544 | :debug:main Re-registering default for destroot.cmd |
|---|
| 545 | :debug:main Re-registering default for destroot.destdir |
|---|
| 546 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 547 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 548 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 549 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 550 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 551 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 552 | :debug:main No need to upgrade! py27-sphinxcontrib-websupport 1.0.1_0 >= py27-sphinxcontrib-websupport 1.0.1_0 |
|---|
| 553 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 554 | :debug:main sphinx_select 0.1_0 exists in the ports tree |
|---|
| 555 | :debug:main sphinx_select 0.1_0 is the latest installed |
|---|
| 556 | :debug:main sphinx_select 0.1_0 is active |
|---|
| 557 | :debug:main Merging existing variants '' into variants |
|---|
| 558 | :debug:main new fully merged portvariants: |
|---|
| 559 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/sphinx_select |
|---|
| 560 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 561 | :debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl |
|---|
| 562 | :debug:main universal_variant is false, so not adding the default universal variant |
|---|
| 563 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 564 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 565 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 566 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 567 | :debug:main No need to upgrade! sphinx_select 0.1_0 >= sphinx_select 0.1_0 |
|---|
| 568 | :debug:main epoch: in tree: 0 installed: 0 |
|---|
| 569 | :debug:main py27-typing 3.6.1_0 exists in the ports tree |
|---|
| 570 | :debug:main py27-typing 3.6.1_0 is the latest installed |
|---|
| 571 | :debug:main py27-typing 3.6.1_0 is active |
|---|
| 572 | :debug:main Merging existing variants '' into variants |
|---|
| 573 | :debug:main new fully merged portvariants: |
|---|
| 574 | :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-typing |
|---|
| 575 | :debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386 |
|---|
| 576 | :debug:main Re-registering default for build.cmd |
|---|
| 577 | :debug:main Re-registering default for destroot.cmd |
|---|
| 578 | :debug:main Re-registering default for destroot.destdir |
|---|
| 579 | :debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl |
|---|
| 580 | :debug:main only one arch supported, so not adding the default universal variant |
|---|
| 581 | :debug:main Running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 582 | :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies |
|---|
| 583 | :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 584 | :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 585 | :debug:main No need to upgrade! py27-typing 3.6.1_0 >= py27-typing 3.6.1_0 |
|---|
| 586 | :msg:main ---> Computing dependencies for bedtools:info:main .:debug:main bedtools has no conflicts |
|---|
| 587 | :debug:main Searching for dependency: py27-sphinx |
|---|
| 588 | :debug:main Found Dependency: receipt exists for py27-sphinx |
|---|
| 589 | :debug:main Searching for dependency: zlib |
|---|
| 590 | :debug:main Found Dependency: receipt exists for zlib |
|---|
| 591 | :debug:main Executing org.macports.main (bedtools) |
|---|
| 592 | :debug:main dropping privileges: euid changed to 502, egid changed to 501. |
|---|
| 593 | :debug:archivefetch archivefetch phase started at Tue Sep 5 22:00:43 CEST 2017 |
|---|
| 594 | :msg:archivefetch ---> Fetching archive for bedtools |
|---|
| 595 | :debug:archivefetch Executing org.macports.archivefetch (bedtools) |
|---|
| 596 | :debug:archivefetch euid/egid changed to: 0/0 |
|---|
| 597 | :debug:archivefetch chowned /opt/local/var/macports/incoming to macports |
|---|
| 598 | :debug:archivefetch euid/egid changed to: 502/501 |
|---|
| 599 | :info:archivefetch ---> bedtools-2.26.0_0.darwin_16.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified |
|---|
| 600 | :msg:archivefetch ---> Attempting to fetch bedtools-2.26.0_0.darwin_16.x86_64.tbz2 from https://packages.macports.org/bedtools |
|---|
| 601 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 602 | :msg:archivefetch ---> Attempting to fetch bedtools-2.26.0_0.darwin_16.x86_64.tbz2 from http://lil.fr.packages.macports.org/bedtools |
|---|
| 603 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 604 | :msg:archivefetch ---> Attempting to fetch bedtools-2.26.0_0.darwin_16.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/bedtools |
|---|
| 605 | :debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 606 | :debug:archivefetch Privilege de-escalation not attempted as not running as root. |
|---|
| 607 | :debug:fetch fetch phase started at Tue Sep 5 22:00:43 CEST 2017 |
|---|
| 608 | :notice:fetch ---> Fetching distfiles for bedtools |
|---|
| 609 | :debug:fetch Executing org.macports.fetch (bedtools) |
|---|
| 610 | :debug:fetch Privilege de-escalation not attempted as not running as root. |
|---|
| 611 | :debug:checksum checksum phase started at Tue Sep 5 22:00:43 CEST 2017 |
|---|
| 612 | :notice:checksum ---> Verifying checksums for bedtools |
|---|
| 613 | :debug:checksum Executing org.macports.checksum (bedtools) |
|---|
| 614 | :info:checksum ---> Checksumming bedtools2-2.26.0.tar.gz |
|---|
| 615 | :debug:checksum Calculated (rmd160) is 880f6c0711f500f24a5f0161ef209c739c3cc735 |
|---|
| 616 | :debug:checksum Correct (rmd160) checksum for bedtools2-2.26.0.tar.gz |
|---|
| 617 | :debug:checksum Calculated (sha256) is ed9e9305ed88838125de53abee0b65ef5decbd75beeeb3adb0cb656b87a965b2 |
|---|
| 618 | :debug:checksum Correct (sha256) checksum for bedtools2-2.26.0.tar.gz |
|---|
| 619 | :debug:checksum Privilege de-escalation not attempted as not running as root. |
|---|
| 620 | :debug:extract extract phase started at Tue Sep 5 22:00:44 CEST 2017 |
|---|
| 621 | :notice:extract ---> Extracting bedtools |
|---|
| 622 | :debug:extract Executing org.macports.extract (bedtools) |
|---|
| 623 | :info:extract ---> Extracting bedtools2-2.26.0.tar.gz |
|---|
| 624 | :debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/bedtools/bedtools2-2.26.0.tar.gz' |
|---|
| 625 | :debug:extract Environment: |
|---|
| 626 | :debug:extract CC_PRINT_OPTIONS='YES' |
|---|
| 627 | :debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/.CC_PRINT_OPTIONS' |
|---|
| 628 | :debug:extract CPATH='/opt/local/include' |
|---|
| 629 | :debug:extract LIBRARY_PATH='/opt/local/lib' |
|---|
| 630 | :debug:extract MACOSX_DEPLOYMENT_TARGET='10.12' |
|---|
| 631 | :info:extract Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/bedtools/bedtools2-2.26.0.tar.gz' | /usr/bin/tar -xf - |
|---|
| 632 | :debug:extract system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/bedtools/bedtools2-2.26.0.tar.gz' | /usr/bin/tar -xf - |
|---|
| 633 | :debug:extract euid/egid changed to: 0/0 |
|---|
| 634 | :debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work to macports |
|---|
| 635 | :debug:extract euid/egid changed to: 502/501 |
|---|
| 636 | :debug:extract Executing proc-post-org.macports.extract-extract-0 |
|---|
| 637 | :debug:extract Privilege de-escalation not attempted as not running as root. |
|---|
| 638 | :debug:patch patch phase started at Tue Sep 5 22:00:44 CEST 2017 |
|---|
| 639 | :debug:patch Executing org.macports.patch (bedtools) |
|---|
| 640 | :debug:patch Privilege de-escalation not attempted as not running as root. |
|---|
| 641 | :debug:configure configure phase started at Tue Sep 5 22:00:44 CEST 2017 |
|---|
| 642 | :notice:configure ---> Configuring bedtools |
|---|
| 643 | :debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7 |
|---|
| 644 | :debug:configure Using compiler 'Xcode Clang' |
|---|
| 645 | :debug:configure Executing org.macports.configure (bedtools) |
|---|
| 646 | :debug:configure Privilege de-escalation not attempted as not running as root. |
|---|
| 647 | :debug:build build phase started at Tue Sep 5 22:00:44 CEST 2017 |
|---|
| 648 | :notice:build ---> Building bedtools |
|---|
| 649 | :debug:build Executing org.macports.build (bedtools) |
|---|
| 650 | :debug:build port disallows a parallel build |
|---|
| 651 | :debug:build Environment: |
|---|
| 652 | :debug:build CC_PRINT_OPTIONS='YES' |
|---|
| 653 | :debug:build CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/.CC_PRINT_OPTIONS' |
|---|
| 654 | :debug:build CPATH='/opt/local/include' |
|---|
| 655 | :debug:build LIBRARY_PATH='/opt/local/lib' |
|---|
| 656 | :debug:build MACOSX_DEPLOYMENT_TARGET='10.12' |
|---|
| 657 | :info:build Executing: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0" && /usr/bin/make -w all CXX=/usr/bin/clang++ CXXFLAGS="-O2 -Wall -D_FILE_OFFSET_BITS=64 -fPIC -stdlib=libc++ -arch x86_64" |
|---|
| 658 | :debug:build system: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0" && /usr/bin/make -w all CXX=/usr/bin/clang++ CXXFLAGS="-O2 -Wall -D_FILE_OFFSET_BITS=64 -fPIC -stdlib=libc++ -arch x86_64" |
|---|
| 659 | :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0' |
|---|
| 660 | :info:build Building BEDTools: |
|---|
| 661 | :info:build ========================================================= |
|---|
| 662 | :info:build DETECTED_VERSION = v2.26.0 |
|---|
| 663 | :info:build CURRENT_VERSION = |
|---|
| 664 | :info:build Updating version file. |
|---|
| 665 | :info:build * Creating BamTools API |
|---|
| 666 | :info:build - Building in src/utils/FileRecordTools |
|---|
| 667 | :info:build * compiling FileRecordMgr.cpp |
|---|
| 668 | :info:build In file included from FileRecordMgr.cpp:2: |
|---|
| 669 | :info:build In file included from ./FileRecordMgr.h:17: |
|---|
| 670 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
|---|
| 671 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
|---|
| 672 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 673 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 674 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 675 | :info:build const char GZIP_ID2 = 139; |
|---|
| 676 | :info:build ~~~~~~~~ ^~~ |
|---|
| 677 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 678 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 679 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 680 | :info:build 2 warnings generated. |
|---|
| 681 | :info:build * compiling FileRecordMergeMgr.cpp |
|---|
| 682 | :info:build In file included from FileRecordMergeMgr.cpp:9: |
|---|
| 683 | :info:build In file included from ./FileRecordMergeMgr.h:11: |
|---|
| 684 | :info:build In file included from ./FileRecordMgr.h:17: |
|---|
| 685 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
|---|
| 686 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
|---|
| 687 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 688 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 689 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 690 | :info:build const char GZIP_ID2 = 139; |
|---|
| 691 | :info:build ~~~~~~~~ ^~~ |
|---|
| 692 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 693 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 694 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 695 | :info:build 2 warnings generated. |
|---|
| 696 | :info:build - Building in FileReaders |
|---|
| 697 | :info:build * compiling FileReader.cpp |
|---|
| 698 | :info:build In file included from FileReader.cpp:3: |
|---|
| 699 | :info:build In file included from ./FileReader.h:10: |
|---|
| 700 | :info:build In file included from ./BufferedStreamMgr.h:14: |
|---|
| 701 | :info:build In file included from ./InputStreamMgr.h:14: |
|---|
| 702 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 703 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 704 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 705 | :info:build const char GZIP_ID2 = 139; |
|---|
| 706 | :info:build ~~~~~~~~ ^~~ |
|---|
| 707 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 708 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 709 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 710 | :info:build 2 warnings generated. |
|---|
| 711 | :info:build * compiling SingleLineDelimTextFileReader.cpp |
|---|
| 712 | :info:build In file included from SingleLineDelimTextFileReader.cpp:1: |
|---|
| 713 | :info:build In file included from ./SingleLineDelimTextFileReader.h:12: |
|---|
| 714 | :info:build In file included from ./FileReader.h:10: |
|---|
| 715 | :info:build In file included from ./BufferedStreamMgr.h:14: |
|---|
| 716 | :info:build In file included from ./InputStreamMgr.h:14: |
|---|
| 717 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 718 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 719 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 720 | :info:build const char GZIP_ID2 = 139; |
|---|
| 721 | :info:build ~~~~~~~~ ^~~ |
|---|
| 722 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 723 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 724 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 725 | :info:build 2 warnings generated. |
|---|
| 726 | :info:build * compiling BamFileReader.cpp |
|---|
| 727 | :info:build In file included from BamFileReader.cpp:1: |
|---|
| 728 | :info:build In file included from ./BamFileReader.h:11: |
|---|
| 729 | :info:build In file included from ./FileReader.h:10: |
|---|
| 730 | :info:build In file included from ./BufferedStreamMgr.h:14: |
|---|
| 731 | :info:build In file included from ./InputStreamMgr.h:14: |
|---|
| 732 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 733 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 734 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 735 | :info:build const char GZIP_ID2 = 139; |
|---|
| 736 | :info:build ~~~~~~~~ ^~~ |
|---|
| 737 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 738 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 739 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 740 | :info:build 2 warnings generated. |
|---|
| 741 | :info:build * compiling BufferedStreamMgr.cpp |
|---|
| 742 | :info:build In file included from BufferedStreamMgr.cpp:8: |
|---|
| 743 | :info:build In file included from ./BufferedStreamMgr.h:14: |
|---|
| 744 | :info:build In file included from ./InputStreamMgr.h:14: |
|---|
| 745 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 746 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 747 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 748 | :info:build const char GZIP_ID2 = 139; |
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| 749 | :info:build ~~~~~~~~ ^~~ |
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| 750 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 751 | :info:build const char OS_UNKNOWN = 255; |
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| 752 | :info:build ~~~~~~~~~~ ^~~ |
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| 753 | :info:build 2 warnings generated. |
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| 754 | :info:build * compiling InputStreamMgr.cpp |
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| 755 | :info:build In file included from InputStreamMgr.cpp:8: |
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| 756 | :info:build In file included from ./InputStreamMgr.h:14: |
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| 757 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 758 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 759 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 760 | :info:build const char GZIP_ID2 = 139; |
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| 761 | :info:build ~~~~~~~~ ^~~ |
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| 762 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 763 | :info:build const char OS_UNKNOWN = 255; |
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| 764 | :info:build ~~~~~~~~~~ ^~~ |
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| 765 | :info:build 2 warnings generated. |
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| 766 | :info:build - Building in Records |
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| 767 | :info:build * compiling Record.cpp |
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| 768 | :info:build * compiling EmptyRecord.cpp |
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| 769 | :info:build In file included from EmptyRecord.cpp:10: |
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| 770 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 771 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 772 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 773 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 774 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 775 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 776 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 777 | :info:build const char GZIP_ID2 = 139; |
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| 778 | :info:build ~~~~~~~~ ^~~ |
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| 779 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 780 | :info:build const char OS_UNKNOWN = 255; |
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| 781 | :info:build ~~~~~~~~~~ ^~~ |
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| 782 | :info:build 2 warnings generated. |
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| 783 | :info:build * compiling Bed3Interval.cpp |
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| 784 | :info:build In file included from Bed3Interval.cpp:2: |
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| 785 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 786 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 787 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 788 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 789 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 790 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 791 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 792 | :info:build const char GZIP_ID2 = 139; |
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| 793 | :info:build ~~~~~~~~ ^~~ |
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| 794 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 795 | :info:build const char OS_UNKNOWN = 255; |
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| 796 | :info:build ~~~~~~~~~~ ^~~ |
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| 797 | :info:build 2 warnings generated. |
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| 798 | :info:build * compiling Bed4Interval.cpp |
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| 799 | :info:build In file included from Bed4Interval.cpp:2: |
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| 800 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 801 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 802 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 803 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 804 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 805 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 806 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 807 | :info:build const char GZIP_ID2 = 139; |
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| 808 | :info:build ~~~~~~~~ ^~~ |
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| 809 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 810 | :info:build const char OS_UNKNOWN = 255; |
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| 811 | :info:build ~~~~~~~~~~ ^~~ |
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| 812 | :info:build 2 warnings generated. |
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| 813 | :info:build * compiling BedGraphInterval.cpp |
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| 814 | :info:build In file included from BedGraphInterval.cpp:2: |
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| 815 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 816 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 817 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 818 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 819 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 820 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 821 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 822 | :info:build const char GZIP_ID2 = 139; |
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| 823 | :info:build ~~~~~~~~ ^~~ |
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| 824 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 825 | :info:build const char OS_UNKNOWN = 255; |
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| 826 | :info:build ~~~~~~~~~~ ^~~ |
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| 827 | :info:build 2 warnings generated. |
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| 828 | :info:build * compiling Bed5Interval.cpp |
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| 829 | :info:build In file included from Bed5Interval.cpp:2: |
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| 830 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 831 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 832 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 833 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 834 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 835 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 836 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 837 | :info:build const char GZIP_ID2 = 139; |
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| 838 | :info:build ~~~~~~~~ ^~~ |
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| 839 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 840 | :info:build const char OS_UNKNOWN = 255; |
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| 841 | :info:build ~~~~~~~~~~ ^~~ |
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| 842 | :info:build 2 warnings generated. |
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| 843 | :info:build * compiling Bed6Interval.cpp |
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| 844 | :info:build In file included from Bed6Interval.cpp:2: |
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| 845 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 846 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 847 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 848 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 849 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 850 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 851 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 852 | :info:build const char GZIP_ID2 = 139; |
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| 853 | :info:build ~~~~~~~~ ^~~ |
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| 854 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 855 | :info:build const char OS_UNKNOWN = 255; |
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| 856 | :info:build ~~~~~~~~~~ ^~~ |
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| 857 | :info:build 2 warnings generated. |
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| 858 | :info:build * compiling PlusFields.cpp |
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| 859 | :info:build In file included from PlusFields.cpp:2: |
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| 860 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 861 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 862 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 863 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 864 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 865 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 866 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 867 | :info:build const char GZIP_ID2 = 139; |
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| 868 | :info:build ~~~~~~~~ ^~~ |
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| 869 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 870 | :info:build const char OS_UNKNOWN = 255; |
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| 871 | :info:build ~~~~~~~~~~ ^~~ |
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| 872 | :info:build 2 warnings generated. |
|---|
| 873 | :info:build * compiling BedPlusInterval.cpp |
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| 874 | :info:build In file included from BedPlusInterval.cpp:2: |
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| 875 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 876 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 877 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 878 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 879 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 880 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 881 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 882 | :info:build const char GZIP_ID2 = 139; |
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| 883 | :info:build ~~~~~~~~ ^~~ |
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| 884 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 885 | :info:build const char OS_UNKNOWN = 255; |
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| 886 | :info:build ~~~~~~~~~~ ^~~ |
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| 887 | :info:build 2 warnings generated. |
|---|
| 888 | :info:build * compiling Bed12Interval.cpp |
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| 889 | :info:build In file included from Bed12Interval.cpp:2: |
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| 890 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 891 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 892 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 893 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 894 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 895 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 896 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 897 | :info:build const char GZIP_ID2 = 139; |
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| 898 | :info:build ~~~~~~~~ ^~~ |
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| 899 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 900 | :info:build const char OS_UNKNOWN = 255; |
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| 901 | :info:build ~~~~~~~~~~ ^~~ |
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| 902 | :info:build 2 warnings generated. |
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| 903 | :info:build * compiling BamRecord.cpp |
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| 904 | :info:build In file included from BamRecord.cpp:8: |
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| 905 | :info:build In file included from ./BamRecord.h:14: |
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| 906 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 907 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 908 | :info:build const char GZIP_ID2 = 139; |
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| 909 | :info:build ~~~~~~~~ ^~~ |
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| 910 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 911 | :info:build const char OS_UNKNOWN = 255; |
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| 912 | :info:build ~~~~~~~~~~ ^~~ |
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| 913 | :info:build 2 warnings generated. |
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| 914 | :info:build * compiling GffRecord.cpp |
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| 915 | :info:build In file included from GffRecord.cpp:2: |
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| 916 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 917 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 918 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 919 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 920 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 921 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 922 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 923 | :info:build const char GZIP_ID2 = 139; |
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| 924 | :info:build ~~~~~~~~ ^~~ |
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| 925 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 926 | :info:build const char OS_UNKNOWN = 255; |
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| 927 | :info:build ~~~~~~~~~~ ^~~ |
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| 928 | :info:build 2 warnings generated. |
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| 929 | :info:build * compiling GffPlusRecord.cpp |
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| 930 | :info:build In file included from GffPlusRecord.cpp:2: |
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| 931 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 932 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 933 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 934 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 935 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 936 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 937 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 938 | :info:build const char GZIP_ID2 = 139; |
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| 939 | :info:build ~~~~~~~~ ^~~ |
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| 940 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 941 | :info:build const char OS_UNKNOWN = 255; |
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| 942 | :info:build ~~~~~~~~~~ ^~~ |
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| 943 | :info:build 2 warnings generated. |
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| 944 | :info:build * compiling VcfRecord.cpp |
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| 945 | :info:build In file included from VcfRecord.cpp:9: |
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| 946 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 947 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 948 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 949 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 950 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 951 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 952 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 953 | :info:build const char GZIP_ID2 = 139; |
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| 954 | :info:build ~~~~~~~~ ^~~ |
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| 955 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 956 | :info:build const char OS_UNKNOWN = 255; |
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| 957 | :info:build ~~~~~~~~~~ ^~~ |
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| 958 | :info:build 2 warnings generated. |
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| 959 | :info:build * compiling NoPosPlusRecord.cpp |
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| 960 | :info:build In file included from NoPosPlusRecord.cpp:2: |
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| 961 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 962 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 963 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 964 | :info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 965 | :info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14: |
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| 966 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 967 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 968 | :info:build const char GZIP_ID2 = 139; |
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| 969 | :info:build ~~~~~~~~ ^~~ |
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| 970 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 971 | :info:build const char OS_UNKNOWN = 255; |
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| 972 | :info:build ~~~~~~~~~~ ^~~ |
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| 973 | :info:build 2 warnings generated. |
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| 974 | :info:build * compiling BlockMgr.cpp |
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| 975 | :info:build In file included from BlockMgr.cpp:9: |
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| 976 | :info:build In file included from ./RecordMgr.h:21: |
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| 977 | :info:build In file included from ./BamRecord.h:14: |
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| 978 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 979 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 980 | :info:build const char GZIP_ID2 = 139; |
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| 981 | :info:build ~~~~~~~~ ^~~ |
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| 982 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 983 | :info:build const char OS_UNKNOWN = 255; |
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| 984 | :info:build ~~~~~~~~~~ ^~~ |
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| 985 | :info:build 2 warnings generated. |
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| 986 | :info:build * compiling StrandQueue.cpp |
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| 987 | :info:build * compiling RecordMgr.cpp |
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| 988 | :info:build In file included from RecordMgr.cpp:1: |
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| 989 | :info:build In file included from ./RecordMgr.h:21: |
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| 990 | :info:build In file included from ./BamRecord.h:14: |
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| 991 | :info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 992 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 993 | :info:build const char GZIP_ID2 = 139; |
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| 994 | :info:build ~~~~~~~~ ^~~ |
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| 995 | :info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 996 | :info:build const char OS_UNKNOWN = 255; |
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| 997 | :info:build ~~~~~~~~~~ ^~~ |
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| 998 | :info:build 2 warnings generated. |
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| 999 | :info:build * compiling RecordList.cpp |
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| 1000 | :info:build * compiling RecordKeyList.cpp |
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| 1001 | :info:build * compiling RecordKeyVector.cpp |
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| 1002 | :info:build - Building in src/utils/FileRecordTools/FileReaders |
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| 1003 | :info:build make[1]: Nothing to be done for `all'. |
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| 1005 | :info:build make[1]: Nothing to be done for `all'. |
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| 1006 | :info:build - Building in src/utils/bedFile |
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| 1007 | :info:build * compiling bedFile.cpp |
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| 1008 | :info:build - Building in src/utils/BinTree |
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| 1009 | :info:build * compiling BinTree.cpp |
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| 1010 | :info:build In file included from BinTree.cpp:1: |
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| 1012 | :info:build In file included from ../../utils//Contexts/ContextIntersect.h:11: |
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| 1014 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1016 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1017 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1018 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1020 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1021 | :info:build const char GZIP_ID2 = 139; |
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| 1022 | :info:build ~~~~~~~~ ^~~ |
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| 1023 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1024 | :info:build const char OS_UNKNOWN = 255; |
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| 1025 | :info:build ~~~~~~~~~~ ^~~ |
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| 1026 | :info:build 2 warnings generated. |
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| 1027 | :info:build - Building in src/utils/version |
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| 1028 | :info:build * compiling version.cpp |
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| 1029 | :info:build - Building in src/utils/bedGraphFile |
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| 1030 | :info:build * compiling bedGraphFile.cpp |
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| 1031 | :info:build - Building in src/utils/chromsweep |
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| 1032 | :info:build * compiling chromsweep.cpp |
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| 1033 | :info:build - Building in src/utils/Contexts |
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| 1034 | :info:build * compiling ContextBase.cpp |
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| 1035 | :info:build In file included from ContextBase.cpp:8: |
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| 1036 | :info:build In file included from ./ContextBase.h:23: |
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| 1037 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1038 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1039 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1040 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1041 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1042 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1043 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1044 | :info:build const char GZIP_ID2 = 139; |
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| 1045 | :info:build ~~~~~~~~ ^~~ |
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| 1046 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1047 | :info:build const char OS_UNKNOWN = 255; |
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| 1048 | :info:build ~~~~~~~~~~ ^~~ |
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| 1049 | :info:build 2 warnings generated. |
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| 1050 | :info:build * compiling ContextIntersect.cpp |
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| 1051 | :info:build In file included from ContextIntersect.cpp:8: |
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| 1052 | :info:build In file included from ./ContextIntersect.h:11: |
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| 1053 | :info:build In file included from ./ContextBase.h:23: |
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| 1054 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1056 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1057 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1058 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1059 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1060 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1061 | :info:build const char GZIP_ID2 = 139; |
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| 1062 | :info:build ~~~~~~~~ ^~~ |
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| 1063 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1064 | :info:build const char OS_UNKNOWN = 255; |
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| 1065 | :info:build ~~~~~~~~~~ ^~~ |
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| 1066 | :info:build 2 warnings generated. |
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| 1067 | :info:build * compiling ContextFisher.cpp |
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| 1068 | :info:build In file included from ContextFisher.cpp:6: |
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| 1069 | :info:build In file included from ./ContextFisher.h:11: |
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| 1070 | :info:build In file included from ./ContextJaccard.h:11: |
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| 1071 | :info:build In file included from ./ContextIntersect.h:11: |
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| 1073 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1074 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1075 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1076 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1077 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1078 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1079 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1080 | :info:build const char GZIP_ID2 = 139; |
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| 1081 | :info:build ~~~~~~~~ ^~~ |
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| 1082 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1083 | :info:build const char OS_UNKNOWN = 255; |
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| 1084 | :info:build ~~~~~~~~~~ ^~~ |
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| 1085 | :info:build 2 warnings generated. |
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| 1086 | :info:build * compiling ContextMap.cpp |
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| 1087 | :info:build In file included from ContextMap.cpp:8: |
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| 1088 | :info:build In file included from ./ContextMap.h:11: |
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| 1089 | :info:build In file included from ./ContextIntersect.h:11: |
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| 1090 | :info:build In file included from ./ContextBase.h:23: |
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| 1091 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1092 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1093 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1094 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1095 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1096 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1097 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1098 | :info:build const char GZIP_ID2 = 139; |
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| 1099 | :info:build ~~~~~~~~ ^~~ |
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| 1100 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1101 | :info:build const char OS_UNKNOWN = 255; |
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| 1102 | :info:build ~~~~~~~~~~ ^~~ |
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| 1103 | :info:build 2 warnings generated. |
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| 1104 | :info:build * compiling ContextSample.cpp |
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| 1105 | :info:build In file included from ContextSample.cpp:7: |
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| 1106 | :info:build In file included from ./ContextSample.h:11: |
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| 1107 | :info:build In file included from ./ContextBase.h:23: |
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| 1108 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1109 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1110 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1111 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1112 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1113 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1114 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1115 | :info:build const char GZIP_ID2 = 139; |
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| 1116 | :info:build ~~~~~~~~ ^~~ |
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| 1117 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1118 | :info:build const char OS_UNKNOWN = 255; |
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| 1119 | :info:build ~~~~~~~~~~ ^~~ |
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| 1120 | :info:build 2 warnings generated. |
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| 1121 | :info:build * compiling ContextSpacing.cpp |
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| 1122 | :info:build In file included from ContextSpacing.cpp:7: |
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| 1123 | :info:build In file included from ./ContextSpacing.h:11: |
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| 1124 | :info:build In file included from ./ContextBase.h:23: |
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| 1125 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1126 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1127 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1128 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1129 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1130 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1131 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 1132 | :info:build const char GZIP_ID2 = 139; |
|---|
| 1133 | :info:build ~~~~~~~~ ^~~ |
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| 1134 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1135 | :info:build const char OS_UNKNOWN = 255; |
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| 1136 | :info:build ~~~~~~~~~~ ^~~ |
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| 1137 | :info:build 2 warnings generated. |
|---|
| 1138 | :info:build * compiling ContextMerge.cpp |
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| 1139 | :info:build In file included from ContextMerge.cpp:9: |
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| 1140 | :info:build In file included from ./ContextMerge.h:11: |
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| 1141 | :info:build In file included from ./ContextBase.h:23: |
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| 1142 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1143 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1144 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1145 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1146 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1147 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1148 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1149 | :info:build const char GZIP_ID2 = 139; |
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| 1150 | :info:build ~~~~~~~~ ^~~ |
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| 1151 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1152 | :info:build const char OS_UNKNOWN = 255; |
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| 1153 | :info:build ~~~~~~~~~~ ^~~ |
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| 1154 | :info:build 2 warnings generated. |
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| 1155 | :info:build * compiling ContextJaccard.cpp |
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| 1156 | :info:build In file included from ContextJaccard.cpp:8: |
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| 1157 | :info:build In file included from ./ContextJaccard.h:11: |
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| 1158 | :info:build In file included from ./ContextIntersect.h:11: |
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| 1159 | :info:build In file included from ./ContextBase.h:23: |
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| 1160 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1161 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1162 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1163 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1164 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1165 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1166 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1167 | :info:build const char GZIP_ID2 = 139; |
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| 1168 | :info:build ~~~~~~~~ ^~~ |
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| 1169 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1170 | :info:build const char OS_UNKNOWN = 255; |
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| 1171 | :info:build ~~~~~~~~~~ ^~~ |
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| 1172 | :info:build 2 warnings generated. |
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| 1173 | :info:build * compiling ContextClosest.cpp |
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| 1174 | :info:build In file included from ContextClosest.cpp:8: |
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| 1175 | :info:build In file included from ./ContextClosest.h:12: |
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| 1176 | :info:build In file included from ./ContextIntersect.h:11: |
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| 1177 | :info:build In file included from ./ContextBase.h:23: |
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| 1178 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1179 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1180 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1181 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1182 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1183 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1184 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1185 | :info:build const char GZIP_ID2 = 139; |
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| 1186 | :info:build ~~~~~~~~ ^~~ |
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| 1187 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1188 | :info:build const char OS_UNKNOWN = 255; |
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| 1189 | :info:build ~~~~~~~~~~ ^~~ |
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| 1190 | :info:build 2 warnings generated. |
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| 1191 | :info:build * compiling ContextSubtract.cpp |
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| 1192 | :info:build In file included from ContextSubtract.cpp:8: |
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| 1193 | :info:build In file included from ./ContextSubtract.h:12: |
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| 1198 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1199 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1200 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1201 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1202 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1203 | :info:build const char GZIP_ID2 = 139; |
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| 1204 | :info:build ~~~~~~~~ ^~~ |
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| 1205 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1206 | :info:build const char OS_UNKNOWN = 255; |
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| 1207 | :info:build ~~~~~~~~~~ ^~~ |
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| 1208 | :info:build 2 warnings generated. |
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| 1209 | :info:build * compiling ContextCoverage.cpp |
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| 1210 | :info:build In file included from ContextCoverage.cpp:8: |
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| 1211 | :info:build In file included from ./ContextCoverage.h:12: |
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| 1217 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1218 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1219 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1220 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1221 | :info:build const char GZIP_ID2 = 139; |
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| 1222 | :info:build ~~~~~~~~ ^~~ |
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| 1223 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1224 | :info:build const char OS_UNKNOWN = 255; |
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| 1225 | :info:build ~~~~~~~~~~ ^~~ |
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| 1226 | :info:build 2 warnings generated. |
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| 1227 | :info:build * compiling ContextComplement.cpp |
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| 1228 | :info:build In file included from ContextComplement.cpp:8: |
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| 1229 | :info:build In file included from ./ContextComplement.h:12: |
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| 1235 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1236 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1237 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1238 | :info:build const char GZIP_ID2 = 139; |
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| 1239 | :info:build ~~~~~~~~ ^~~ |
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| 1240 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1241 | :info:build const char OS_UNKNOWN = 255; |
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| 1242 | :info:build ~~~~~~~~~~ ^~~ |
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| 1243 | :info:build 2 warnings generated. |
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| 1244 | :info:build * compiling ContextGroupBy.cpp |
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| 1245 | :info:build In file included from ContextGroupBy.cpp:9: |
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| 1246 | :info:build In file included from ./ContextGroupBy.h:11: |
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| 1247 | :info:build In file included from ./ContextBase.h:23: |
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| 1248 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1249 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1250 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1251 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1252 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1253 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1254 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1255 | :info:build const char GZIP_ID2 = 139; |
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| 1256 | :info:build ~~~~~~~~ ^~~ |
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| 1257 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1258 | :info:build const char OS_UNKNOWN = 255; |
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| 1259 | :info:build ~~~~~~~~~~ ^~~ |
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| 1260 | :info:build 2 warnings generated. |
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| 1261 | :info:build - Building in src/utils/general |
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| 1262 | :info:build * compiling QuickString.cpp |
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| 1263 | :info:build * compiling ParseTools.cpp |
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| 1264 | :info:build * compiling PushBackStreamBuf.cpp |
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| 1265 | :info:build * compiling CompressionTools.cpp |
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| 1266 | :info:build * compiling Tokenizer.cpp |
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| 1267 | :info:build * compiling CommonHelp.cpp |
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| 1268 | :info:build - Building in src/utils/gzstream |
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| 1269 | :info:build /usr/bin/clang++ -O2 -Wall -D_FILE_OFFSET_BITS=64 -fPIC -stdlib=libc++ -arch x86_64 -c -o ../../../obj//gzstream.o gzstream.C -I. |
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| 1270 | :info:build - Building in src/utils/fileType |
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| 1271 | :info:build * compiling fileType.cpp |
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| 1272 | :info:build * compiling FileRecordTypeChecker.cpp |
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| 1273 | :info:build In file included from FileRecordTypeChecker.cpp:3: |
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| 1274 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1275 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1276 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1277 | :info:build const char GZIP_ID2 = 139; |
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| 1278 | :info:build ~~~~~~~~ ^~~ |
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| 1279 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1280 | :info:build const char OS_UNKNOWN = 255; |
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| 1281 | :info:build ~~~~~~~~~~ ^~~ |
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| 1282 | :info:build 2 warnings generated. |
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| 1283 | :info:build - Building in src/utils/bedFilePE |
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| 1284 | :info:build * compiling bedFilePE.cpp |
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| 1285 | :info:build - Building in src/utils/KeyListOps |
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| 1286 | :info:build * compiling KeyListOps.cpp |
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| 1287 | :info:build In file included from KeyListOps.cpp:8: |
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| 1288 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1289 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1290 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1291 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1292 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1293 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1294 | :info:build const char GZIP_ID2 = 139; |
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| 1295 | :info:build ~~~~~~~~ ^~~ |
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| 1296 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1297 | :info:build const char OS_UNKNOWN = 255; |
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| 1298 | :info:build ~~~~~~~~~~ ^~~ |
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| 1299 | :info:build 2 warnings generated. |
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| 1300 | :info:build * compiling KeyListOpsMethods.cpp |
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| 1301 | :info:build - Building in src/utils/NewChromsweep |
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| 1302 | :info:build * compiling NewChromsweep.cpp |
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| 1303 | :info:build In file included from NewChromsweep.cpp:14: |
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| 1304 | :info:build In file included from ../../utils//Contexts/ContextIntersect.h:11: |
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| 1305 | :info:build In file included from ../../utils//Contexts/ContextBase.h:23: |
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| 1306 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1308 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1309 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1310 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1311 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1312 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1313 | :info:build const char GZIP_ID2 = 139; |
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| 1314 | :info:build ~~~~~~~~ ^~~ |
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| 1315 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1316 | :info:build const char OS_UNKNOWN = 255; |
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| 1317 | :info:build ~~~~~~~~~~ ^~~ |
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| 1318 | :info:build 2 warnings generated. |
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| 1319 | :info:build * compiling CloseSweep.cpp |
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| 1320 | :info:build In file included from CloseSweep.cpp:8: |
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| 1321 | :info:build In file included from ./CloseSweep.h:15: |
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| 1322 | :info:build In file included from ../../utils//Contexts/ContextClosest.h:12: |
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| 1323 | :info:build In file included from ../../utils//Contexts/ContextIntersect.h:11: |
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| 1324 | :info:build In file included from ../../utils//Contexts/ContextBase.h:23: |
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| 1325 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1326 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1327 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1328 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1329 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1330 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1331 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1332 | :info:build const char GZIP_ID2 = 139; |
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| 1333 | :info:build ~~~~~~~~ ^~~ |
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| 1334 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1335 | :info:build const char OS_UNKNOWN = 255; |
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| 1336 | :info:build ~~~~~~~~~~ ^~~ |
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| 1337 | :info:build 2 warnings generated. |
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| 1338 | :info:build - Building in src/utils/sequenceUtilities |
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| 1339 | :info:build * compiling sequenceUtils.cpp |
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| 1340 | :info:build - Building in src/utils/tabFile |
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| 1341 | :info:build * compiling tabFile.cpp |
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| 1342 | :info:build - Building in src/utils/BamTools |
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| 1343 | :info:build * compiling BamAlignment.cpp |
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| 1344 | :info:build In file included from src/api/BamAlignment.cpp:10: |
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| 1345 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1346 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1347 | :info:build const char GZIP_ID2 = 139; |
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| 1348 | :info:build ~~~~~~~~ ^~~ |
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| 1349 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1350 | :info:build const char OS_UNKNOWN = 255; |
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| 1351 | :info:build ~~~~~~~~~~ ^~~ |
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| 1352 | :info:build 2 warnings generated. |
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| 1353 | :info:build * compiling BamMultiReader.cpp |
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| 1354 | :info:build In file included from src/api/BamMultiReader.cpp:15: |
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| 1355 | :info:build In file included from src/api/BamMultiReader.h:14: |
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| 1356 | :info:build In file included from src/api/BamReader.h:14: |
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| 1357 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1358 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1359 | :info:build const char GZIP_ID2 = 139; |
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| 1360 | :info:build ~~~~~~~~ ^~~ |
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| 1361 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1362 | :info:build const char OS_UNKNOWN = 255; |
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| 1363 | :info:build ~~~~~~~~~~ ^~~ |
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| 1364 | :info:build 2 warnings generated. |
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| 1365 | :info:build * compiling BamReader.cpp |
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| 1366 | :info:build In file included from src/api/BamReader.cpp:10: |
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| 1367 | :info:build In file included from src/api/BamReader.h:14: |
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| 1368 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1369 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1370 | :info:build const char GZIP_ID2 = 139; |
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| 1371 | :info:build ~~~~~~~~ ^~~ |
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| 1372 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1373 | :info:build const char OS_UNKNOWN = 255; |
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| 1374 | :info:build ~~~~~~~~~~ ^~~ |
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| 1375 | :info:build 2 warnings generated. |
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| 1376 | :info:build * compiling BamWriter.cpp |
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| 1377 | :info:build In file included from src/api/BamWriter.cpp:10: |
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| 1378 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1379 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1380 | :info:build const char GZIP_ID2 = 139; |
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| 1381 | :info:build ~~~~~~~~ ^~~ |
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| 1382 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1383 | :info:build const char OS_UNKNOWN = 255; |
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| 1384 | :info:build ~~~~~~~~~~ ^~~ |
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| 1385 | :info:build 2 warnings generated. |
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| 1386 | :info:build * compiling SamHeader.cpp |
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| 1387 | :info:build * compiling SamProgram.cpp |
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| 1388 | :info:build * compiling SamProgramChain.cpp |
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| 1389 | :info:build * compiling SamReadGroup.cpp |
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| 1390 | :info:build * compiling SamReadGroupDictionary.cpp |
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| 1391 | :info:build * compiling SamSequence.cpp |
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| 1392 | :info:build * compiling SamSequenceDictionary.cpp |
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| 1393 | :info:build * compiling BamHeader_p.cpp |
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| 1394 | :info:build In file included from src/api/internal/bam/BamHeader_p.cpp:11: |
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| 1395 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1396 | :info:build const char GZIP_ID2 = 139; |
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| 1397 | :info:build ~~~~~~~~ ^~~ |
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| 1398 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1399 | :info:build const char OS_UNKNOWN = 255; |
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| 1400 | :info:build ~~~~~~~~~~ ^~~ |
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| 1401 | :info:build 2 warnings generated. |
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| 1402 | :info:build * compiling BamMultiReader_p.cpp |
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| 1403 | :info:build In file included from src/api/internal/bam/BamMultiReader_p.cpp:10: |
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| 1404 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1405 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1406 | :info:build const char GZIP_ID2 = 139; |
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| 1407 | :info:build ~~~~~~~~ ^~~ |
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| 1408 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1409 | :info:build const char OS_UNKNOWN = 255; |
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| 1410 | :info:build ~~~~~~~~~~ ^~~ |
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| 1411 | :info:build 2 warnings generated. |
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| 1412 | :info:build * compiling BamRandomAccessController_p.cpp |
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| 1413 | :info:build In file included from src/api/internal/bam/BamRandomAccessController_p.cpp:12: |
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| 1414 | :info:build In file included from src/api/internal/bam/BamReader_p.h:23: |
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| 1415 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1416 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 1417 | :info:build const char GZIP_ID2 = 139; |
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| 1418 | :info:build ~~~~~~~~ ^~~ |
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| 1419 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1420 | :info:build const char OS_UNKNOWN = 255; |
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| 1421 | :info:build ~~~~~~~~~~ ^~~ |
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| 1422 | :info:build 2 warnings generated. |
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| 1423 | :info:build * compiling BamReader_p.cpp |
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| 1424 | :info:build In file included from src/api/internal/bam/BamReader_p.cpp:10: |
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| 1425 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1426 | :info:build const char GZIP_ID2 = 139; |
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| 1427 | :info:build ~~~~~~~~ ^~~ |
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| 1428 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1429 | :info:build const char OS_UNKNOWN = 255; |
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| 1430 | :info:build ~~~~~~~~~~ ^~~ |
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| 1431 | :info:build 2 warnings generated. |
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| 1432 | :info:build * compiling BamWriter_p.cpp |
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| 1433 | :info:build In file included from src/api/internal/bam/BamWriter_p.cpp:10: |
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| 1434 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1435 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1436 | :info:build const char GZIP_ID2 = 139; |
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| 1437 | :info:build ~~~~~~~~ ^~~ |
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| 1438 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1439 | :info:build const char OS_UNKNOWN = 255; |
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| 1440 | :info:build ~~~~~~~~~~ ^~~ |
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| 1441 | :info:build 2 warnings generated. |
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| 1442 | :info:build * compiling BamIndexFactory_p.cpp |
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| 1443 | :info:build * compiling BamStandardIndex_p.cpp |
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| 1444 | :info:build In file included from src/api/internal/index/BamStandardIndex_p.cpp:10: |
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| 1445 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1446 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1447 | :info:build const char GZIP_ID2 = 139; |
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| 1448 | :info:build ~~~~~~~~ ^~~ |
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| 1449 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1450 | :info:build const char OS_UNKNOWN = 255; |
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| 1451 | :info:build ~~~~~~~~~~ ^~~ |
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| 1452 | :info:build 2 warnings generated. |
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| 1453 | :info:build * compiling BamToolsIndex_p.cpp |
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| 1454 | :info:build In file included from src/api/internal/index/BamToolsIndex_p.cpp:10: |
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| 1455 | :info:build In file included from src/api/BamAlignment.h:15: |
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| 1456 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1457 | :info:build const char GZIP_ID2 = 139; |
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| 1458 | :info:build ~~~~~~~~ ^~~ |
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| 1459 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1460 | :info:build const char OS_UNKNOWN = 255; |
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| 1461 | :info:build ~~~~~~~~~~ ^~~ |
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| 1462 | :info:build 2 warnings generated. |
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| 1463 | :info:build * compiling BamDeviceFactory_p.cpp |
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| 1464 | :info:build * compiling BamFile_p.cpp |
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| 1465 | :info:build * compiling BamFtp_p.cpp |
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| 1466 | :info:build * compiling BamHttp_p.cpp |
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| 1467 | :info:build * compiling BamPipe_p.cpp |
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| 1468 | :info:build * compiling BgzfStream_p.cpp |
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| 1469 | :info:build In file included from src/api/internal/io/BgzfStream_p.cpp:13: |
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| 1470 | :info:build src/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1471 | :info:build const char GZIP_ID2 = 139; |
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| 1472 | :info:build ~~~~~~~~ ^~~ |
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| 1473 | :info:build src/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1474 | :info:build const char OS_UNKNOWN = 255; |
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| 1475 | :info:build ~~~~~~~~~~ ^~~ |
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| 1476 | :info:build 2 warnings generated. |
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| 1477 | :info:build * compiling ByteArray_p.cpp |
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| 1478 | :info:build * compiling HostAddress_p.cpp |
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| 1479 | :info:build src/api/internal/io/HostAddress_p.cpp:266:33: warning: self-comparison always evaluates to false [-Wtautological-compare] |
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| 1480 | :info:build return m_ip4Address < m_ip4Address; |
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| 1481 | :info:build ^ |
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| 1482 | :info:build 1 warning generated. |
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| 1483 | :info:build * compiling HostInfo_p.cpp |
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| 1484 | :info:build * compiling HttpHeader_p.cpp |
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| 1485 | :info:build src/api/internal/io/HttpHeader_p.cpp:33:19: warning: unused variable 'TAB_CHAR' [-Wunused-const-variable] |
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| 1486 | :info:build static const char TAB_CHAR = '\t'; |
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| 1487 | :info:build ^ |
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| 1488 | :info:build 1 warning generated. |
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| 1489 | :info:build * compiling ILocalIODevice_p.cpp |
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| 1490 | :info:build * compiling RollingBuffer_p.cpp |
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| 1491 | :info:build * compiling TcpSocketEngine_p.cpp |
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| 1492 | :info:build * compiling TcpSocketEngine_unix_p.cpp |
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| 1493 | :info:build * compiling TcpSocket_p.cpp |
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| 1494 | :info:build * compiling SamFormatParser_p.cpp |
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| 1495 | :info:build * compiling SamFormatPrinter_p.cpp |
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| 1496 | :info:build * compiling SamHeaderValidator_p.cpp |
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| 1497 | :info:build * compiling BamException_p.cpp |
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| 1498 | :info:build * linking lib/libbamtools.a |
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| 1499 | :info:build ar cr lib/libbamtools.a src/api/BamAlignment.o src/api/BamMultiReader.o src/api/BamReader.o src/api/BamWriter.o src/api/SamHeader.o src/api/SamProgram.o src/api/SamProgramChain.o src/api/SamReadGroup.o src/api/SamReadGroupDictionary.o src/api/SamSequence.o src/api/SamSequenceDictionary.o src/api/internal/bam/BamHeader_p.o src/api/internal/bam/BamMultiReader_p.o src/api/internal/bam/BamRandomAccessController_p.o src/api/internal/bam/BamReader_p.o src/api/internal/bam/BamWriter_p.o src/api/internal/index/BamIndexFactory_p.o src/api/internal/index/BamStandardIndex_p.o src/api/internal/index/BamToolsIndex_p.o src/api/internal/io/BamDeviceFactory_p.o src/api/internal/io/BamFile_p.o src/api/internal/io/BamFtp_p.o src/api/internal/io/BamHttp_p.o src/api/internal/io/BamPipe_p.o src/api/internal/io/BgzfStream_p.o src/api/internal/io/ByteArray_p.o src/api/internal/io/HostAddress_p.o src/api/internal/io/HostInfo_p.o src/api/internal/io/HttpHeader_p.o src/api/internal/io/ILocalIODevice_p.o src/api/internal/io/RollingBuffer_p.o src/api/internal/io/TcpSocketEngine_p.o src/api/internal/io/TcpSocketEngine_unix_p.o src/api/internal/io/TcpSocket_p.o src/api/internal/sam/SamFormatParser_p.o src/api/internal/sam/SamFormatPrinter_p.o src/api/internal/sam/SamHeaderValidator_p.o src/api/internal/utils/BamException_p.o |
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| 1500 | :info:build ranlib lib/libbamtools.a |
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| 1501 | :info:build - Building in src/utils/BamTools-Ancillary |
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| 1502 | :info:build * compiling BamAncillary.cpp |
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| 1503 | :info:build clang: warning: argument unused during compilation: '-Lsrc/utils/BamTools//lib' [-Wunused-command-line-argument] |
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| 1504 | :info:build In file included from BamAncillary.cpp:12: |
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| 1505 | :info:build In file included from ./BamAncillary.h:14: |
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| 1506 | :info:build In file included from ..//BamTools/include/api/BamAlignment.h:15: |
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| 1507 | :info:build ..//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1508 | :info:build const char GZIP_ID2 = 139; |
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| 1509 | :info:build ~~~~~~~~ ^~~ |
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| 1510 | :info:build ..//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1511 | :info:build const char OS_UNKNOWN = 255; |
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| 1512 | :info:build ~~~~~~~~~~ ^~~ |
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| 1513 | :info:build 2 warnings generated. |
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| 1514 | :info:build * compiling BamAncillary.cpp |
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| 1515 | :info:build clang: warning: argument unused during compilation: '-Lsrc/utils/BamTools//lib' [-Wunused-command-line-argument] |
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| 1516 | :info:build In file included from BamAncillary.cpp:12: |
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| 1517 | :info:build In file included from ./BamAncillary.h:14: |
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| 1518 | :info:build In file included from ..//BamTools/include/api/BamAlignment.h:15: |
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| 1519 | :info:build ..//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1520 | :info:build const char GZIP_ID2 = 139; |
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| 1521 | :info:build ~~~~~~~~ ^~~ |
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| 1522 | :info:build ..//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1523 | :info:build const char OS_UNKNOWN = 255; |
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| 1524 | :info:build ~~~~~~~~~~ ^~~ |
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| 1525 | :info:build 2 warnings generated. |
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| 1526 | :info:build - Building in src/utils/BlockedIntervals |
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| 1527 | :info:build * compiling BlockedIntervals.cpp |
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| 1528 | :info:build clang: warning: argument unused during compilation: '-Lsrc/utils/BamTools//lib' [-Wunused-command-line-argument] |
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| 1529 | :info:build In file included from BlockedIntervals.cpp:12: |
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| 1530 | :info:build In file included from ./BlockedIntervals.h:14: |
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| 1531 | :info:build In file included from ..//BamTools/include/api/BamAlignment.h:15: |
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| 1532 | :info:build ..//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1533 | :info:build const char GZIP_ID2 = 139; |
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| 1534 | :info:build ~~~~~~~~ ^~~ |
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| 1535 | :info:build ..//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1536 | :info:build const char OS_UNKNOWN = 255; |
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| 1537 | :info:build ~~~~~~~~~~ ^~~ |
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| 1538 | :info:build 2 warnings generated. |
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| 1539 | :info:build - Building in src/utils/Fasta |
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| 1540 | :info:build * compiling Fasta.cpp |
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| 1541 | :info:build * compiling split.cpp |
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| 1542 | :info:build - Building in src/utils/VectorOps |
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| 1543 | :info:build * compiling VectorOps.cpp |
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| 1544 | :info:build - Building in src/utils/GenomeFile |
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| 1545 | :info:build * compiling GenomeFile.cpp |
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| 1546 | :info:build In file included from GenomeFile.cpp:13: |
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| 1547 | :info:build In file included from ./GenomeFile.h:23: |
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| 1548 | :info:build In file included from ..//BamTools/include/api/BamReader.h:14: |
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| 1549 | :info:build In file included from ..//BamTools/include/api/BamAlignment.h:15: |
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| 1550 | :info:build ..//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1551 | :info:build const char GZIP_ID2 = 139; |
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| 1552 | :info:build ~~~~~~~~ ^~~ |
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| 1553 | :info:build ..//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1554 | :info:build const char OS_UNKNOWN = 255; |
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| 1555 | :info:build ~~~~~~~~~~ ^~~ |
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| 1556 | :info:build 2 warnings generated. |
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| 1557 | :info:build * compiling NewGenomeFile.cpp |
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| 1558 | :info:build In file included from NewGenomeFile.cpp:12: |
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| 1559 | :info:build In file included from ./NewGenomeFile.h:20: |
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| 1560 | :info:build In file included from ..//BamTools/include/api/BamReader.h:14: |
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| 1561 | :info:build In file included from ..//BamTools/include/api/BamAlignment.h:15: |
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| 1562 | :info:build ..//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1563 | :info:build const char GZIP_ID2 = 139; |
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| 1564 | :info:build ~~~~~~~~ ^~~ |
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| 1565 | :info:build ..//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1566 | :info:build const char OS_UNKNOWN = 255; |
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| 1567 | :info:build ~~~~~~~~~~ ^~~ |
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| 1568 | :info:build 2 warnings generated. |
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| 1569 | :info:build - Building in src/utils/RecordOutputMgr |
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| 1570 | :info:build * compiling RecordOutputMgr.cpp |
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| 1571 | :info:build In file included from RecordOutputMgr.cpp:8: |
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| 1572 | :info:build In file included from ./RecordOutputMgr.h:11: |
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| 1573 | :info:build In file included from ../../utils//Contexts/ContextBase.h:23: |
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| 1574 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1575 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1576 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1577 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1578 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1579 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1580 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1581 | :info:build const char GZIP_ID2 = 139; |
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| 1582 | :info:build ~~~~~~~~ ^~~ |
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| 1583 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1584 | :info:build const char OS_UNKNOWN = 255; |
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| 1585 | :info:build ~~~~~~~~~~ ^~~ |
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| 1586 | :info:build 2 warnings generated. |
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| 1587 | :info:build - Building in src/utils/ToolBase |
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| 1588 | :info:build * compiling ToolBase.cpp |
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| 1589 | :info:build In file included from ToolBase.cpp:1: |
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| 1590 | :info:build In file included from ./ToolBase.h:12: |
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| 1591 | :info:build In file included from ../../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
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| 1592 | :info:build In file included from ../../utils//Contexts/ContextBase.h:23: |
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| 1593 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1594 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1595 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1596 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1597 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1598 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1599 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1600 | :info:build const char GZIP_ID2 = 139; |
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| 1601 | :info:build ~~~~~~~~ ^~~ |
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| 1602 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1603 | :info:build const char OS_UNKNOWN = 255; |
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| 1604 | :info:build ~~~~~~~~~~ ^~~ |
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| 1605 | :info:build 2 warnings generated. |
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| 1606 | :info:build - Building in src/utils/driver |
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| 1607 | :info:build * compiling BedtoolsDriver.cpp |
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| 1608 | :info:build In file included from BedtoolsDriver.cpp:1: |
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| 1609 | :info:build In file included from ./BedtoolsDriver.h:1: |
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| 1610 | :info:build In file included from ../../utils//Contexts/ContextBase.h:23: |
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| 1611 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1612 | :info:build In file included from ../../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1613 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1614 | :info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1615 | :info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14: |
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| 1616 | :info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1617 | :info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1618 | :info:build const char GZIP_ID2 = 139; |
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| 1619 | :info:build ~~~~~~~~ ^~~ |
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| 1620 | :info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1621 | :info:build const char OS_UNKNOWN = 255; |
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| 1622 | :info:build ~~~~~~~~~~ ^~~ |
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| 1623 | :info:build 2 warnings generated. |
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| 1624 | :info:build - Building in src/annotateBed |
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| 1625 | :info:build * compiling annotateMain.cpp |
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| 1626 | :info:build * compiling annotateBed.cpp |
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| 1627 | :info:build - Building in src/bamToBed |
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| 1628 | :info:build * compiling bamToBed.cpp |
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| 1629 | :info:build In file included from bamToBed.cpp:12: |
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| 1630 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1631 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1632 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 1633 | :info:build const char GZIP_ID2 = 139; |
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| 1634 | :info:build ~~~~~~~~ ^~~ |
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| 1635 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1636 | :info:build const char OS_UNKNOWN = 255; |
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| 1637 | :info:build ~~~~~~~~~~ ^~~ |
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| 1638 | :info:build 2 warnings generated. |
|---|
| 1639 | :info:build - Building in src/bamToFastq |
|---|
| 1640 | :info:build * compiling bamToFastqMain.cpp |
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| 1641 | :info:build In file included from bamToFastqMain.cpp:22: |
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| 1642 | :info:build In file included from ./bamToFastq.h:15: |
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| 1643 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1644 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1645 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 1646 | :info:build const char GZIP_ID2 = 139; |
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| 1647 | :info:build ~~~~~~~~ ^~~ |
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| 1648 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1649 | :info:build const char OS_UNKNOWN = 255; |
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| 1650 | :info:build ~~~~~~~~~~ ^~~ |
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| 1651 | :info:build 2 warnings generated. |
|---|
| 1652 | :info:build * compiling bamToFastq.cpp |
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| 1653 | :info:build In file included from bamToFastq.cpp:15: |
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| 1654 | :info:build In file included from ./bamToFastq.h:15: |
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| 1655 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1656 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1657 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1658 | :info:build const char GZIP_ID2 = 139; |
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| 1659 | :info:build ~~~~~~~~ ^~~ |
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| 1660 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1661 | :info:build const char OS_UNKNOWN = 255; |
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| 1662 | :info:build ~~~~~~~~~~ ^~~ |
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| 1663 | :info:build 2 warnings generated. |
|---|
| 1664 | :info:build - Building in src/bedToBam |
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| 1665 | :info:build * compiling bedToBam.cpp |
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| 1666 | :info:build In file included from bedToBam.cpp:14: |
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| 1667 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 1668 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1669 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1670 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1671 | :info:build const char GZIP_ID2 = 139; |
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| 1672 | :info:build ~~~~~~~~ ^~~ |
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| 1673 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1674 | :info:build const char OS_UNKNOWN = 255; |
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| 1675 | :info:build ~~~~~~~~~~ ^~~ |
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| 1676 | :info:build 2 warnings generated. |
|---|
| 1677 | :info:build - Building in src/bedpeToBam |
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| 1678 | :info:build * compiling bedpeToBam.cpp |
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| 1679 | :info:build In file included from bedpeToBam.cpp:14: |
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| 1680 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 1681 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1682 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1683 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1684 | :info:build const char GZIP_ID2 = 139; |
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| 1685 | :info:build ~~~~~~~~ ^~~ |
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| 1686 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1687 | :info:build const char OS_UNKNOWN = 255; |
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| 1688 | :info:build ~~~~~~~~~~ ^~~ |
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| 1689 | :info:build 2 warnings generated. |
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| 1690 | :info:build - Building in src/bedToIgv |
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| 1691 | :info:build * compiling bedToIgv.cpp |
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| 1692 | :info:build In file included from bedToIgv.cpp:14: |
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| 1693 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 1694 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1695 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1696 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1697 | :info:build const char GZIP_ID2 = 139; |
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| 1698 | :info:build ~~~~~~~~ ^~~ |
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| 1699 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1700 | :info:build const char OS_UNKNOWN = 255; |
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| 1701 | :info:build ~~~~~~~~~~ ^~~ |
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| 1702 | :info:build 2 warnings generated. |
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| 1703 | :info:build - Building in src/bed12ToBed6 |
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| 1704 | :info:build * compiling bed12ToBed6.cpp |
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| 1705 | :info:build In file included from bed12ToBed6.cpp:13: |
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| 1706 | :info:build In file included from ../utils//BlockedIntervals/BlockedIntervals.h:14: |
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| 1707 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1708 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1709 | :info:build const char GZIP_ID2 = 139; |
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| 1710 | :info:build ~~~~~~~~ ^~~ |
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| 1711 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1712 | :info:build const char OS_UNKNOWN = 255; |
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| 1713 | :info:build ~~~~~~~~~~ ^~~ |
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| 1714 | :info:build 2 warnings generated. |
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| 1715 | :info:build - Building in src/closestFile |
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| 1716 | :info:build * compiling closestHelp.cpp |
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| 1717 | :info:build * compiling closestFile.cpp |
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| 1718 | :info:build In file included from closestFile.cpp:8: |
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| 1719 | :info:build In file included from ./closestFile.h:11: |
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| 1720 | :info:build In file included from ../../src//intersectFile/intersectFile.h:15: |
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| 1721 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 1722 | :info:build In file included from ../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
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| 1723 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
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| 1724 | :info:build In file included from ../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1725 | :info:build In file included from ../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 1726 | :info:build In file included from ../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1727 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1728 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1729 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1730 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1731 | :info:build const char GZIP_ID2 = 139; |
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| 1732 | :info:build ~~~~~~~~ ^~~ |
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| 1733 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1734 | :info:build const char OS_UNKNOWN = 255; |
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| 1735 | :info:build ~~~~~~~~~~ ^~~ |
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| 1736 | :info:build 2 warnings generated. |
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| 1737 | :info:build - Building in src/clusterBed |
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| 1738 | :info:build * compiling clusterMain.cpp |
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| 1740 | :info:build - Building in src/complementFile |
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| 1741 | :info:build * compiling complementHelp.cpp |
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| 1743 | :info:build In file included from complementFile.cpp:1: |
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| 1745 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 1751 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1752 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1753 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1754 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1755 | :info:build const char GZIP_ID2 = 139; |
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| 1756 | :info:build ~~~~~~~~ ^~~ |
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| 1757 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1758 | :info:build const char OS_UNKNOWN = 255; |
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| 1759 | :info:build ~~~~~~~~~~ ^~~ |
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| 1760 | :info:build 2 warnings generated. |
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| 1761 | :info:build - Building in src/coverageFile |
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| 1762 | :info:build * compiling coverageHelp.cpp |
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| 1763 | :info:build * compiling coverageFile.cpp |
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| 1764 | :info:build In file included from coverageFile.cpp:8: |
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| 1773 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1774 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1775 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1776 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1777 | :info:build const char GZIP_ID2 = 139; |
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| 1778 | :info:build ~~~~~~~~ ^~~ |
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| 1779 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1780 | :info:build const char OS_UNKNOWN = 255; |
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| 1782 | :info:build 2 warnings generated. |
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| 1784 | :info:build * compiling expand.cpp |
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| 1785 | :info:build - Building in src/fastaFromBed |
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| 1786 | :info:build * compiling fastaFromBedMain.cpp |
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| 1787 | :info:build In file included from fastaFromBedMain.cpp:12: |
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| 1788 | :info:build In file included from ./fastaFromBed.h:16: |
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| 1789 | :info:build In file included from ../utils//BlockedIntervals/BlockedIntervals.h:14: |
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| 1790 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1791 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1792 | :info:build const char GZIP_ID2 = 139; |
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| 1793 | :info:build ~~~~~~~~ ^~~ |
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| 1794 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1796 | :info:build ~~~~~~~~~~ ^~~ |
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| 1797 | :info:build 2 warnings generated. |
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| 1798 | :info:build * compiling fastaFromBed.cpp |
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| 1799 | :info:build In file included from fastaFromBed.cpp:13: |
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| 1800 | :info:build In file included from ./fastaFromBed.h:16: |
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| 1801 | :info:build In file included from ../utils//BlockedIntervals/BlockedIntervals.h:14: |
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| 1803 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1804 | :info:build const char GZIP_ID2 = 139; |
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| 1805 | :info:build ~~~~~~~~ ^~~ |
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| 1806 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1807 | :info:build const char OS_UNKNOWN = 255; |
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| 1809 | :info:build 2 warnings generated. |
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| 1810 | :info:build - Building in src/flankBed |
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| 1811 | :info:build * compiling flankBedMain.cpp |
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| 1812 | :info:build In file included from flankBedMain.cpp:12: |
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| 1813 | :info:build In file included from ./flankBed.h:14: |
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| 1814 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 1815 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1817 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1818 | :info:build const char GZIP_ID2 = 139; |
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| 1819 | :info:build ~~~~~~~~ ^~~ |
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| 1820 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1821 | :info:build const char OS_UNKNOWN = 255; |
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| 1823 | :info:build 2 warnings generated. |
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| 1824 | :info:build * compiling flankBed.cpp |
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| 1825 | :info:build In file included from flankBed.cpp:13: |
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| 1826 | :info:build In file included from ./flankBed.h:14: |
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| 1827 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 1828 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1829 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1830 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1831 | :info:build const char GZIP_ID2 = 139; |
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| 1832 | :info:build ~~~~~~~~ ^~~ |
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| 1833 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1834 | :info:build const char OS_UNKNOWN = 255; |
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| 1836 | :info:build 2 warnings generated. |
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| 1837 | :info:build - Building in src/genomeCoverageBed |
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| 1838 | :info:build * compiling genomeCoverageMain.cpp |
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| 1839 | :info:build In file included from genomeCoverageMain.cpp:12: |
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| 1840 | :info:build In file included from ./genomeCoverageBed.h:13: |
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| 1841 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 1842 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1843 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1844 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1845 | :info:build const char GZIP_ID2 = 139; |
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| 1846 | :info:build ~~~~~~~~ ^~~ |
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| 1847 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1848 | :info:build const char OS_UNKNOWN = 255; |
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| 1849 | :info:build ~~~~~~~~~~ ^~~ |
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| 1850 | :info:build 2 warnings generated. |
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| 1851 | :info:build * compiling genomeCoverageBed.cpp |
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| 1852 | :info:build In file included from genomeCoverageBed.cpp:13: |
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| 1853 | :info:build In file included from ./genomeCoverageBed.h:13: |
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| 1854 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 1855 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1856 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1857 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1858 | :info:build const char GZIP_ID2 = 139; |
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| 1859 | :info:build ~~~~~~~~ ^~~ |
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| 1860 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1861 | :info:build const char OS_UNKNOWN = 255; |
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| 1863 | :info:build 2 warnings generated. |
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| 1864 | :info:build - Building in src/getOverlap |
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| 1865 | :info:build * compiling getOverlap.cpp |
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| 1866 | :info:build - Building in src/groupBy |
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| 1867 | :info:build * compiling groupBy.cpp |
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| 1868 | :info:build In file included from groupBy.cpp:7: |
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| 1869 | :info:build In file included from ./groupBy.h:10: |
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| 1870 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 1871 | :info:build In file included from ../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
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| 1877 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1878 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1879 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1880 | :info:build const char GZIP_ID2 = 139; |
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| 1881 | :info:build ~~~~~~~~ ^~~ |
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| 1882 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1883 | :info:build const char OS_UNKNOWN = 255; |
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| 1884 | :info:build ~~~~~~~~~~ ^~~ |
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| 1885 | :info:build 2 warnings generated. |
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| 1886 | :info:build * compiling groupByHelp.cpp |
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| 1887 | :info:build - Building in src/intersectFile |
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| 1888 | :info:build * compiling intersectHelp.cpp |
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| 1889 | :info:build * compiling intersectFile.cpp |
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| 1890 | :info:build In file included from intersectFile.cpp:13: |
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| 1891 | :info:build In file included from ./intersectFile.h:15: |
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| 1892 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 1899 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1900 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1901 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1902 | :info:build const char GZIP_ID2 = 139; |
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| 1903 | :info:build ~~~~~~~~ ^~~ |
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| 1904 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1907 | :info:build 2 warnings generated. |
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| 1908 | :info:build - Building in src/fisher |
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| 1909 | :info:build * compiling fisherHelp.cpp |
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| 1910 | :info:build * compiling fisher.cpp |
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| 1911 | :info:build In file included from fisher.cpp:8: |
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| 1912 | :info:build In file included from ./fisher.h:11: |
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| 1913 | :info:build In file included from ../../src//jaccard/jaccard.h:11: |
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| 1914 | :info:build In file included from ../utils//Contexts/ContextJaccard.h:11: |
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| 1915 | :info:build In file included from ../utils//Contexts/ContextIntersect.h:11: |
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| 1916 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
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| 1920 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1921 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1922 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1923 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1924 | :info:build const char GZIP_ID2 = 139; |
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| 1925 | :info:build ~~~~~~~~ ^~~ |
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| 1926 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1927 | :info:build const char OS_UNKNOWN = 255; |
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| 1928 | :info:build ~~~~~~~~~~ ^~~ |
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| 1929 | :info:build 2 warnings generated. |
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| 1930 | :info:build * compiling kfunc.cpp |
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| 1931 | :info:build - Building in src/jaccard |
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| 1932 | :info:build * compiling jaccardHelp.cpp |
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| 1933 | :info:build * compiling jaccard.cpp |
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| 1934 | :info:build In file included from jaccard.cpp:8: |
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| 1935 | :info:build In file included from ./jaccard.h:11: |
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| 1936 | :info:build In file included from ../utils//Contexts/ContextJaccard.h:11: |
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| 1937 | :info:build In file included from ../utils//Contexts/ContextIntersect.h:11: |
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| 1938 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
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| 1942 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1943 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1944 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1945 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1946 | :info:build const char GZIP_ID2 = 139; |
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| 1947 | :info:build ~~~~~~~~ ^~~ |
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| 1948 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1949 | :info:build const char OS_UNKNOWN = 255; |
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| 1950 | :info:build ~~~~~~~~~~ ^~~ |
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| 1951 | :info:build 2 warnings generated. |
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| 1952 | :info:build - Building in src/linksBed |
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| 1953 | :info:build * compiling linksMain.cpp |
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| 1954 | :info:build * compiling linksBed.cpp |
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| 1955 | :info:build - Building in src/maskFastaFromBed |
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| 1956 | :info:build * compiling maskFastaFromBedMain.cpp |
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| 1957 | :info:build * compiling maskFastaFromBed.cpp |
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| 1958 | :info:build - Building in src/mapFile |
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| 1959 | :info:build * compiling mapHelp.cpp |
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| 1960 | :info:build * compiling mapFile.cpp |
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| 1961 | :info:build In file included from mapFile.cpp:8: |
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| 1962 | :info:build In file included from ./mapFile.h:11: |
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| 1963 | :info:build In file included from ../../src//intersectFile/intersectFile.h:15: |
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| 1964 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 1965 | :info:build In file included from ../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
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| 1966 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
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| 1967 | :info:build In file included from ../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 1969 | :info:build In file included from ../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1970 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1971 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1972 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1973 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1974 | :info:build const char GZIP_ID2 = 139; |
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| 1975 | :info:build ~~~~~~~~ ^~~ |
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| 1976 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1977 | :info:build const char OS_UNKNOWN = 255; |
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| 1978 | :info:build ~~~~~~~~~~ ^~~ |
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| 1979 | :info:build 2 warnings generated. |
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| 1980 | :info:build - Building in src/mergeFile |
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| 1981 | :info:build * compiling mergeHelp.cpp |
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| 1982 | :info:build * compiling mergeFile.cpp |
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| 1983 | :info:build In file included from mergeFile.cpp:8: |
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| 1984 | :info:build In file included from ./mergeFile.h:11: |
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| 1985 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 1986 | :info:build In file included from ../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
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| 1987 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
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| 1990 | :info:build In file included from ../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 1991 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 1992 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 1993 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 1994 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 1995 | :info:build const char GZIP_ID2 = 139; |
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| 1996 | :info:build ~~~~~~~~ ^~~ |
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| 1997 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 1999 | :info:build ~~~~~~~~~~ ^~~ |
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| 2000 | :info:build 2 warnings generated. |
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| 2001 | :info:build - Building in src/multiBamCov |
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| 2002 | :info:build * compiling multiBamCovMain.cpp |
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| 2003 | :info:build In file included from multiBamCovMain.cpp:12: |
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| 2004 | :info:build In file included from ./multiBamCov.h:16: |
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| 2005 | :info:build In file included from ../utils//BamTools/include/api/BamMultiReader.h:14: |
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| 2006 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2007 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2008 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2009 | :info:build const char GZIP_ID2 = 139; |
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| 2010 | :info:build ~~~~~~~~ ^~~ |
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| 2011 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2012 | :info:build const char OS_UNKNOWN = 255; |
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| 2013 | :info:build ~~~~~~~~~~ ^~~ |
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| 2014 | :info:build 2 warnings generated. |
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| 2015 | :info:build * compiling multiBamCov.cpp |
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| 2016 | :info:build In file included from multiBamCov.cpp:13: |
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| 2017 | :info:build In file included from ./multiBamCov.h:16: |
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| 2018 | :info:build In file included from ../utils//BamTools/include/api/BamMultiReader.h:14: |
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| 2019 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2020 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2021 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2022 | :info:build const char GZIP_ID2 = 139; |
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| 2023 | :info:build ~~~~~~~~ ^~~ |
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| 2024 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2025 | :info:build const char OS_UNKNOWN = 255; |
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| 2026 | :info:build ~~~~~~~~~~ ^~~ |
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| 2027 | :info:build 2 warnings generated. |
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| 2028 | :info:build - Building in src/multiIntersectBed |
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| 2029 | :info:build * compiling multiIntersectBedMain.cpp |
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| 2030 | :info:build In file included from multiIntersectBedMain.cpp:22: |
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| 2031 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2032 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2033 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2034 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2035 | :info:build const char GZIP_ID2 = 139; |
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| 2036 | :info:build ~~~~~~~~ ^~~ |
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| 2037 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2038 | :info:build const char OS_UNKNOWN = 255; |
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| 2039 | :info:build ~~~~~~~~~~ ^~~ |
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| 2040 | :info:build 2 warnings generated. |
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| 2041 | :info:build * compiling multiIntersectBed.cpp |
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| 2042 | :info:build In file included from multiIntersectBed.cpp:20: |
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| 2043 | :info:build In file included from ./multiIntersectBed.h:20: |
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| 2044 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2045 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2046 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2047 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2048 | :info:build const char GZIP_ID2 = 139; |
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| 2049 | :info:build ~~~~~~~~ ^~~ |
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| 2050 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2051 | :info:build const char OS_UNKNOWN = 255; |
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| 2052 | :info:build ~~~~~~~~~~ ^~~ |
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| 2053 | :info:build 2 warnings generated. |
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| 2054 | :info:build - Building in src/nucBed |
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| 2055 | :info:build * compiling nucBedMain.cpp |
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| 2056 | :info:build * compiling nucBed.cpp |
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| 2057 | :info:build - Building in src/pairToBed |
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| 2058 | :info:build * compiling pairToBedMain.cpp |
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| 2059 | :info:build In file included from pairToBedMain.cpp:12: |
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| 2060 | :info:build In file included from ./pairToBed.h:15: |
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| 2061 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2062 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2063 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2064 | :info:build const char GZIP_ID2 = 139; |
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| 2065 | :info:build ~~~~~~~~ ^~~ |
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| 2066 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2067 | :info:build const char OS_UNKNOWN = 255; |
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| 2068 | :info:build ~~~~~~~~~~ ^~~ |
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| 2069 | :info:build 2 warnings generated. |
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| 2070 | :info:build * compiling pairToBed.cpp |
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| 2071 | :info:build In file included from pairToBed.cpp:13: |
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| 2072 | :info:build In file included from ./pairToBed.h:15: |
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| 2073 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2074 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2075 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2076 | :info:build const char GZIP_ID2 = 139; |
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| 2077 | :info:build ~~~~~~~~ ^~~ |
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| 2078 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2079 | :info:build const char OS_UNKNOWN = 255; |
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| 2080 | :info:build ~~~~~~~~~~ ^~~ |
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| 2081 | :info:build 2 warnings generated. |
|---|
| 2082 | :info:build - Building in src/pairToPair |
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| 2083 | :info:build * compiling pairToPairMain.cpp |
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| 2084 | :info:build * compiling pairToPair.cpp |
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| 2085 | :info:build - Building in src/randomBed |
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| 2086 | :info:build * compiling randomBedMain.cpp |
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| 2087 | :info:build In file included from randomBedMain.cpp:12: |
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| 2088 | :info:build In file included from ./randomBed.h:12: |
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| 2089 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2090 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2091 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2092 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2093 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2094 | :info:build ~~~~~~~~ ^~~ |
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| 2095 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2096 | :info:build const char OS_UNKNOWN = 255; |
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| 2097 | :info:build ~~~~~~~~~~ ^~~ |
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| 2098 | :info:build 2 warnings generated. |
|---|
| 2099 | :info:build * compiling randomBed.cpp |
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| 2100 | :info:build In file included from randomBed.cpp:12: |
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| 2101 | :info:build In file included from ./randomBed.h:12: |
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| 2102 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2103 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2104 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2105 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2106 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2107 | :info:build ~~~~~~~~ ^~~ |
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| 2108 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2109 | :info:build const char OS_UNKNOWN = 255; |
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| 2110 | :info:build ~~~~~~~~~~ ^~~ |
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| 2111 | :info:build 2 warnings generated. |
|---|
| 2112 | :info:build - Building in src/regressTest |
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| 2113 | :info:build compiling RegressTest.cpp |
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| 2114 | :info:build In file included from RegressTest.cpp:3: |
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| 2115 | :info:build In file included from ../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12: |
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| 2116 | :info:build In file included from ../utils//FileRecordTools/FileReaders/FileReader.h:10: |
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| 2117 | :info:build In file included from ../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 2118 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 2119 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2120 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2121 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2122 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2123 | :info:build ~~~~~~~~ ^~~ |
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| 2124 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2125 | :info:build const char OS_UNKNOWN = 255; |
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| 2126 | :info:build ~~~~~~~~~~ ^~~ |
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| 2127 | :info:build 2 warnings generated. |
|---|
| 2128 | :info:build compiling regressTestMain.cpp |
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| 2129 | :info:build - Building in src/reldist |
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| 2130 | :info:build * compiling reldistMain.cpp |
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| 2131 | :info:build In file included from reldistMain.cpp:12: |
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| 2132 | :info:build In file included from ./reldist.h:17: |
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| 2133 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2134 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2135 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2136 | :info:build const char GZIP_ID2 = 139; |
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| 2137 | :info:build ~~~~~~~~ ^~~ |
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| 2138 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2139 | :info:build const char OS_UNKNOWN = 255; |
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| 2140 | :info:build ~~~~~~~~~~ ^~~ |
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| 2141 | :info:build 2 warnings generated. |
|---|
| 2142 | :info:build * compiling reldist.cpp |
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| 2143 | :info:build In file included from reldist.cpp:13: |
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| 2144 | :info:build In file included from ./reldist.h:17: |
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| 2145 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2146 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2147 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2148 | :info:build const char GZIP_ID2 = 139; |
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| 2149 | :info:build ~~~~~~~~ ^~~ |
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| 2150 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2151 | :info:build const char OS_UNKNOWN = 255; |
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| 2152 | :info:build ~~~~~~~~~~ ^~~ |
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| 2153 | :info:build 2 warnings generated. |
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| 2154 | :info:build - Building in src/sampleFile |
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| 2155 | :info:build * compiling sampleHelp.cpp |
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| 2156 | :info:build * compiling sampleFile.cpp |
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| 2157 | :info:build In file included from sampleFile.cpp:1: |
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| 2158 | :info:build In file included from ./sampleFile.h:11: |
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| 2159 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 2160 | :info:build In file included from ../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
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| 2161 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
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| 2162 | :info:build In file included from ../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 2163 | :info:build In file included from ../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 2164 | :info:build In file included from ../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 2165 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
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| 2166 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2167 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2168 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2169 | :info:build const char GZIP_ID2 = 139; |
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| 2170 | :info:build ~~~~~~~~ ^~~ |
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| 2171 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2172 | :info:build const char OS_UNKNOWN = 255; |
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| 2173 | :info:build ~~~~~~~~~~ ^~~ |
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| 2174 | :info:build 2 warnings generated. |
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| 2175 | :info:build - Building in src/shiftBed |
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| 2176 | :info:build * compiling shiftBedMain.cpp |
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| 2177 | :info:build In file included from shiftBedMain.cpp:10: |
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| 2178 | :info:build In file included from ./shiftBed.h:12: |
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| 2179 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2180 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2181 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2182 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2183 | :info:build const char GZIP_ID2 = 139; |
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| 2184 | :info:build ~~~~~~~~ ^~~ |
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| 2185 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2186 | :info:build const char OS_UNKNOWN = 255; |
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| 2187 | :info:build ~~~~~~~~~~ ^~~ |
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| 2188 | :info:build 2 warnings generated. |
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| 2189 | :info:build * compiling shiftBed.cpp |
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| 2190 | :info:build In file included from shiftBed.cpp:11: |
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| 2191 | :info:build In file included from ./shiftBed.h:12: |
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| 2192 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2193 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2194 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2195 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2196 | :info:build const char GZIP_ID2 = 139; |
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| 2197 | :info:build ~~~~~~~~ ^~~ |
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| 2198 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2199 | :info:build const char OS_UNKNOWN = 255; |
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| 2200 | :info:build ~~~~~~~~~~ ^~~ |
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| 2201 | :info:build 2 warnings generated. |
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| 2202 | :info:build - Building in src/shuffleBed |
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| 2203 | :info:build * compiling shuffleBedMain.cpp |
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| 2204 | :info:build In file included from shuffleBedMain.cpp:12: |
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| 2205 | :info:build In file included from ./shuffleBed.h:14: |
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| 2206 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2207 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2208 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2209 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2210 | :info:build const char GZIP_ID2 = 139; |
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| 2211 | :info:build ~~~~~~~~ ^~~ |
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| 2212 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2213 | :info:build const char OS_UNKNOWN = 255; |
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| 2214 | :info:build ~~~~~~~~~~ ^~~ |
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| 2215 | :info:build 2 warnings generated. |
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| 2216 | :info:build * compiling shuffleBed.cpp |
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| 2217 | :info:build In file included from shuffleBed.cpp:13: |
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| 2218 | :info:build In file included from ./shuffleBed.h:14: |
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| 2219 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2220 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2221 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2222 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2223 | :info:build const char GZIP_ID2 = 139; |
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| 2224 | :info:build ~~~~~~~~ ^~~ |
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| 2225 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2226 | :info:build const char OS_UNKNOWN = 255; |
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| 2227 | :info:build ~~~~~~~~~~ ^~~ |
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| 2228 | :info:build 2 warnings generated. |
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| 2229 | :info:build - Building in src/slopBed |
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| 2230 | :info:build * compiling slopBedMain.cpp |
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| 2231 | :info:build In file included from slopBedMain.cpp:12: |
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| 2232 | :info:build In file included from ./slopBed.h:14: |
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| 2233 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2234 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
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| 2235 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2236 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2237 | :info:build const char GZIP_ID2 = 139; |
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| 2238 | :info:build ~~~~~~~~ ^~~ |
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| 2239 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2240 | :info:build const char OS_UNKNOWN = 255; |
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| 2241 | :info:build ~~~~~~~~~~ ^~~ |
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| 2242 | :info:build 2 warnings generated. |
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| 2243 | :info:build * compiling slopBed.cpp |
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| 2244 | :info:build In file included from slopBed.cpp:13: |
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| 2245 | :info:build In file included from ./slopBed.h:14: |
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| 2246 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
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| 2248 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
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| 2249 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
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| 2250 | :info:build const char GZIP_ID2 = 139; |
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| 2251 | :info:build ~~~~~~~~ ^~~ |
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| 2252 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
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| 2253 | :info:build const char OS_UNKNOWN = 255; |
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| 2255 | :info:build 2 warnings generated. |
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| 2256 | :info:build - Building in src/sortBed |
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| 2257 | :info:build * compiling sortMain.cpp |
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| 2258 | :info:build * compiling sortBed.cpp |
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| 2259 | :info:build - Building in src/spacingFile |
|---|
| 2260 | :info:build * compiling spacingHelp.cpp |
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| 2261 | :info:build * compiling spacingFile.cpp |
|---|
| 2262 | :info:build In file included from spacingFile.cpp:7: |
|---|
| 2263 | :info:build In file included from ./spacingFile.h:12: |
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| 2264 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
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| 2265 | :info:build In file included from ../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
|---|
| 2266 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
|---|
| 2267 | :info:build In file included from ../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
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| 2268 | :info:build In file included from ../utils//FileRecordTools/FileRecordMgr.h:17: |
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| 2269 | :info:build In file included from ../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
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| 2270 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
|---|
| 2271 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2272 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2273 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2274 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2275 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2276 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2277 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2278 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2279 | :info:build 2 warnings generated. |
|---|
| 2280 | :info:build - Building in src/split |
|---|
| 2281 | :info:build * compiling splitBed.cpp |
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| 2282 | :info:build * compiling splitBedMain.cpp |
|---|
| 2283 | :info:build - Building in src/subtractFile |
|---|
| 2284 | :info:build * compiling subtractHelp.cpp |
|---|
| 2285 | :info:build * compiling subtractFile.cpp |
|---|
| 2286 | :info:build In file included from subtractFile.cpp:1: |
|---|
| 2287 | :info:build In file included from ./subtractFile.h:12: |
|---|
| 2288 | :info:build In file included from ../../src//intersectFile/intersectFile.h:15: |
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| 2289 | :info:build In file included from ../utils//ToolBase/ToolBase.h:12: |
|---|
| 2290 | :info:build In file included from ../utils//RecordOutputMgr/RecordOutputMgr.h:11: |
|---|
| 2291 | :info:build In file included from ../utils//Contexts/ContextBase.h:23: |
|---|
| 2292 | :info:build In file included from ../utils//FileRecordTools/FileRecordMergeMgr.h:11: |
|---|
| 2293 | :info:build In file included from ../utils//FileRecordTools/FileRecordMgr.h:17: |
|---|
| 2294 | :info:build In file included from ../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
|---|
| 2295 | :info:build In file included from ../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14: |
|---|
| 2296 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2297 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2298 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2299 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2300 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2301 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2302 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2303 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2304 | :info:build 2 warnings generated. |
|---|
| 2305 | :info:build - Building in src/tagBam |
|---|
| 2306 | :info:build * compiling tagBamMain.cpp |
|---|
| 2307 | :info:build In file included from tagBamMain.cpp:12: |
|---|
| 2308 | :info:build In file included from ./tagBam.h:17: |
|---|
| 2309 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2310 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2311 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2312 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2313 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2314 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2315 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2316 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2317 | :info:build 2 warnings generated. |
|---|
| 2318 | :info:build * compiling tagBam.cpp |
|---|
| 2319 | :info:build In file included from tagBam.cpp:13: |
|---|
| 2320 | :info:build In file included from ./tagBam.h:17: |
|---|
| 2321 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2322 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2323 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2324 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2325 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2326 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2327 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2328 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2329 | :info:build 2 warnings generated. |
|---|
| 2330 | :info:build - Building in src/unionBedGraphs |
|---|
| 2331 | :info:build * compiling unionBedGraphsMain.cpp |
|---|
| 2332 | :info:build In file included from unionBedGraphsMain.cpp:22: |
|---|
| 2333 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
|---|
| 2334 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2335 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2336 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2337 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2338 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2339 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2340 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2341 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2342 | :info:build 2 warnings generated. |
|---|
| 2343 | :info:build * compiling unionBedGraphs.cpp |
|---|
| 2344 | :info:build In file included from unionBedGraphs.cpp:20: |
|---|
| 2345 | :info:build In file included from ./unionBedGraphs.h:19: |
|---|
| 2346 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
|---|
| 2347 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2348 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2349 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2350 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2351 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2352 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2353 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2354 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2355 | :info:build 2 warnings generated. |
|---|
| 2356 | :info:build - Building in src/windowBed |
|---|
| 2357 | :info:build * compiling windowMain.cpp |
|---|
| 2358 | :info:build In file included from windowMain.cpp:12: |
|---|
| 2359 | :info:build In file included from ./windowBed.h:15: |
|---|
| 2360 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2361 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2362 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2363 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2364 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2365 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2366 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2367 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2368 | :info:build 2 warnings generated. |
|---|
| 2369 | :info:build * compiling windowBed.cpp |
|---|
| 2370 | :info:build In file included from windowBed.cpp:13: |
|---|
| 2371 | :info:build In file included from ./windowBed.h:15: |
|---|
| 2372 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2373 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2374 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2375 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2376 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2377 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2378 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2379 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2380 | :info:build 2 warnings generated. |
|---|
| 2381 | :info:build - Building in src/windowMaker |
|---|
| 2382 | :info:build * compiling windowMakerMain.cpp |
|---|
| 2383 | :info:build In file included from windowMakerMain.cpp:12: |
|---|
| 2384 | :info:build In file included from ./windowMaker.h:12: |
|---|
| 2385 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
|---|
| 2386 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2387 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2388 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2389 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2390 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2391 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2392 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2393 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2394 | :info:build 2 warnings generated. |
|---|
| 2395 | :info:build * compiling windowMaker.cpp |
|---|
| 2396 | :info:build In file included from windowMaker.cpp:12: |
|---|
| 2397 | :info:build In file included from ./windowMaker.h:12: |
|---|
| 2398 | :info:build In file included from ../utils//GenomeFile/GenomeFile.h:23: |
|---|
| 2399 | :info:build In file included from ../utils//BamTools/include/api/BamReader.h:14: |
|---|
| 2400 | :info:build In file included from ../utils//BamTools/include/api/BamAlignment.h:15: |
|---|
| 2401 | :info:build ../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2402 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2403 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2404 | :info:build ../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2405 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2406 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2407 | :info:build 2 warnings generated. |
|---|
| 2408 | :info:build - Building main bedtools binary. |
|---|
| 2409 | :info:build In file included from src/bedtools.cpp:21: |
|---|
| 2410 | :info:build In file included from src/utils/driver/BedtoolsDriver.h:1: |
|---|
| 2411 | :info:build In file included from src/utils/Contexts/ContextBase.h:23: |
|---|
| 2412 | :info:build In file included from src/utils/FileRecordTools/FileRecordMergeMgr.h:11: |
|---|
| 2413 | :info:build In file included from src/utils/FileRecordTools/FileRecordMgr.h:17: |
|---|
| 2414 | :info:build In file included from src/utils/FileRecordTools/FileReaders/BufferedStreamMgr.h:14: |
|---|
| 2415 | :info:build In file included from src/utils/FileRecordTools/FileReaders/InputStreamMgr.h:14: |
|---|
| 2416 | :info:build In file included from src/utils/BamTools/include/api/BamReader.h:14: |
|---|
| 2417 | :info:build In file included from src/utils/BamTools/include/api/BamAlignment.h:15: |
|---|
| 2418 | :info:build src/utils/BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion] |
|---|
| 2419 | :info:build const char GZIP_ID2 = 139; |
|---|
| 2420 | :info:build ~~~~~~~~ ^~~ |
|---|
| 2421 | :info:build src/utils/BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion] |
|---|
| 2422 | :info:build const char OS_UNKNOWN = 255; |
|---|
| 2423 | :info:build ~~~~~~~~~~ ^~~ |
|---|
| 2424 | :info:build 2 warnings generated. |
|---|
| 2425 | :info:build done. |
|---|
| 2426 | :info:build - Creating executables for old CLI. |
|---|
| 2427 | :info:build done. |
|---|
| 2428 | :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0' |
|---|
| 2429 | :debug:build Executing proc-post-org.macports.build-build-0 |
|---|
| 2430 | :debug:build system -W /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0/docs: /usr/bin/make SPHINXBUILD=/opt/local/bin/sphinx-build-2.7 html man |
|---|
| 2431 | :info:build /opt/local/bin/sphinx-build-2.7 -b html -d _build/doctrees . _build/html |
|---|
| 2432 | :info:build Running Sphinx v1.6.3 |
|---|
| 2433 | :info:build making output directory... |
|---|
| 2434 | :info:build WARNING: sphinx.ext.pngmath has been deprecated. Please use sphinx.ext.imgmath instead. |
|---|
| 2435 | :info:build WARNING: extension 'matplotlib.sphinxext.plot_directive' returned an unsupported object from its setup() function; it should return None or a metadata dictionary |
|---|
| 2436 | :info:build Exception occurred: |
|---|
| 2437 | :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/sphinx/registry.py", line 225, in load_extension |
|---|
| 2438 | :info:build app.extensions[extname] = Extension(extname, mod, **metadata) |
|---|
| 2439 | :info:build TypeError: 'Mock' object is not iterable |
|---|
| 2440 | :info:build The full traceback has been saved in /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/.tmp/sphinx-err-Hw8wb2.log, if you want to report the issue to the developers. |
|---|
| 2441 | :info:build Please also report this if it was a user error, so that a better error message can be provided next time. |
|---|
| 2442 | :info:build A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks! |
|---|
| 2443 | :info:build make: *** [html] Error 1 |
|---|
| 2444 | :info:build Command failed: /usr/bin/make SPHINXBUILD=/opt/local/bin/sphinx-build-2.7 html man |
|---|
| 2445 | :info:build Exit code: 2 |
|---|
| 2446 | :error:build Failed to build bedtools: command execution failed |
|---|
| 2447 | :debug:build Error code: NONE |
|---|
| 2448 | :debug:build Backtrace: command execution failed |
|---|
| 2449 | :debug:build while executing |
|---|
| 2450 | :debug:build "$post $targetname" |
|---|
| 2451 | :error:build See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/main.log for details. |
|---|
