Ticket #54896: main.log

version:1
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-sphinx 1.6.3_0 exists in the ports tree
:debug:main py27-sphinx 1.6.3_0  is the latest installed
:debug:main py27-sphinx 1.6.3_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-sphinx
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-sphinx 1.6.3_0 >= py27-sphinx 1.6.3_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-docutils 0.14_0 exists in the ports tree
:debug:main py27-docutils 0.14_0  is the latest installed
:debug:main py27-docutils 0.14_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-docutils
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-docutils 0.14_0 >= py27-docutils 0.14_0
:debug:main epoch: in tree: 2 installed: 2
:debug:main python27 2.7.14_0 exists in the ports tree
:debug:main python27 2.7.14_0  is the latest installed
:debug:main python27 2.7.14_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/lang/python27
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! python27 2.7.14_0 >= python27 2.7.14_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main bzip2 1.0.6_0 exists in the ports tree
:debug:main bzip2 1.0.6_0  is the latest installed
:debug:main bzip2 1.0.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/bzip2
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main db48 4.8.30_4 exists in the ports tree
:debug:main db48 4.8.30_4  is the latest installed
:debug:main db48 4.8.30_4  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/databases/db48
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! db48 4.8.30_4 >= db48 4.8.30_4
:debug:main epoch: in tree: 0 installed: 0
:debug:main expat 2.2.4_0 exists in the ports tree
:debug:main expat 2.2.4_0  is the latest installed
:debug:main expat 2.2.4_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/expat
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! expat 2.2.4_0 >= expat 2.2.4_0
:debug:main epoch: in tree: 2 installed: 2
:debug:main gettext 0.19.8.1_0 exists in the ports tree
:debug:main gettext 0.19.8.1_0  is the latest installed
:debug:main gettext 0.19.8.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/gettext
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Sourcing PortGroup compiler_blacklist_versions 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main compiler clang 900.0.37 not blacklisted because it doesn't match {clang < 211.10.1}
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! gettext 0.19.8.1_0 >= gettext 0.19.8.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main libiconv 1.15_0 exists in the ports tree
:debug:main libiconv 1.15_0  is the latest installed
:debug:main libiconv 1.15_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/textproc/libiconv
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! libiconv 1.15_0 >= libiconv 1.15_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main ncurses 6.0-20170916_0 exists in the ports tree
:debug:main ncurses 6.0-20170916_0  is the latest installed
:debug:main ncurses 6.0-20170916_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/ncurses
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! ncurses 6.0-20170916_0 >= ncurses 6.0-20170916_0
:debug:main epoch: in tree: 20090923 installed: 20090923
:debug:main libedit 20170329-3.1_1 exists in the ports tree
:debug:main libedit 20170329-3.1_1  is the latest installed
:debug:main libedit 20170329-3.1_1  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/libedit
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! libedit 20170329-3.1_1 >= libedit 20170329-3.1_1
:debug:main epoch: in tree: 0 installed: 0
:debug:main libffi 3.2.1_0 exists in the ports tree
:debug:main libffi 3.2.1_0  is the latest installed
:debug:main libffi 3.2.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/libffi
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! libffi 3.2.1_0 >= libffi 3.2.1_0
:debug:main epoch: in tree: 1 installed: 1
:debug:main openssl 1.0.2l_0 exists in the ports tree
:debug:main openssl 1.0.2l_0  is the latest installed
:debug:main openssl 1.0.2l_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/devel/openssl
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Sourcing PortGroup muniversal 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! openssl 1.0.2l_0 >= openssl 1.0.2l_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main zlib 1.2.11_0 exists in the ports tree
:debug:main zlib 1.2.11_0  is the latest installed
:debug:main zlib 1.2.11_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/archivers/zlib
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Sourcing PortGroup xcodeversion 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! zlib 1.2.11_0 >= zlib 1.2.11_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main sqlite3 3.20.1_0 exists in the ports tree
:debug:main sqlite3 3.20.1_0  is the latest installed
:debug:main sqlite3 3.20.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/databases/sqlite3
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! sqlite3 3.20.1_0 >= sqlite3 3.20.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main python_select 0.3_7 exists in the ports tree
:debug:main python_select 0.3_7  is the latest installed
:debug:main python_select 0.3_7  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/python_select
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! python_select 0.3_7 >= python_select 0.3_7
:debug:main epoch: in tree: 0 installed: 0
:debug:main python2_select 0.0_2 exists in the ports tree
:debug:main python2_select 0.0_2  is the latest installed
:debug:main python2_select 0.0_2  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/sysutils/python2_select
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! python2_select 0.0_2 >= python2_select 0.0_2
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-roman 2.0.0_0 exists in the ports tree
:debug:main py27-roman 2.0.0_0  is the latest installed
:debug:main py27-roman 2.0.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-roman
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-roman 2.0.0_0 >= py27-roman 2.0.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-setuptools 36.5.0_0 exists in the ports tree
:debug:main py27-setuptools 36.5.0_0  is the latest installed
:debug:main py27-setuptools 36.5.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-setuptools
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-setuptools 36.5.0_0 >= py27-setuptools 36.5.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-alabaster 0.7.6_0 exists in the ports tree
:debug:main py27-alabaster 0.7.6_0  is the latest installed
:debug:main py27-alabaster 0.7.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-alabaster
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-alabaster 0.7.6_0 >= py27-alabaster 0.7.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-babel 2.5.1_0 exists in the ports tree
:debug:main py27-babel 2.5.1_0  is the latest installed
:debug:main py27-babel 2.5.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-babel
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-babel 2.5.1_0 >= py27-babel 2.5.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-tz 2017.2_0 exists in the ports tree
:debug:main py27-tz 2017.2_0  is the latest installed
:debug:main py27-tz 2017.2_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-tz
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-tz 2017.2_0 >= py27-tz 2017.2_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-imagesize 0.7.1_0 exists in the ports tree
:debug:main py27-imagesize 0.7.1_0  is the latest installed
:debug:main py27-imagesize 0.7.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-imagesize
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-imagesize 0.7.1_0 >= py27-imagesize 0.7.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-jinja2 2.9.6_0 exists in the ports tree
:debug:main py27-jinja2 2.9.6_0  is the latest installed
:debug:main py27-jinja2 2.9.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-jinja2
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-jinja2 2.9.6_0 >= py27-jinja2 2.9.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-markupsafe 0.23_0 exists in the ports tree
:debug:main py27-markupsafe 0.23_0  is the latest installed
:debug:main py27-markupsafe 0.23_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-markupsafe
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-markupsafe 0.23_0 >= py27-markupsafe 0.23_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-pygments 2.2.0_0 exists in the ports tree
:debug:main py27-pygments 2.2.0_0  is the latest installed
:debug:main py27-pygments 2.2.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-pygments
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-pygments 2.2.0_0 >= py27-pygments 2.2.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-requests 2.18.4_0 exists in the ports tree
:debug:main py27-requests 2.18.4_0  is the latest installed
:debug:main py27-requests 2.18.4_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-requests
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-requests 2.18.4_0 >= py27-requests 2.18.4_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-chardet 3.0.2_0 exists in the ports tree
:debug:main py27-chardet 3.0.2_0  is the latest installed
:debug:main py27-chardet 3.0.2_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-chardet
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main Sourcing PortGroup github 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/github-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-chardet 3.0.2_0 >= py27-chardet 3.0.2_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-idna 2.6_0 exists in the ports tree
:debug:main py27-idna 2.6_0  is the latest installed
:debug:main py27-idna 2.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-idna
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-idna 2.6_0 >= py27-idna 2.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-urllib3 1.22_0 exists in the ports tree
:debug:main py27-urllib3 1.22_0  is the latest installed
:debug:main py27-urllib3 1.22_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-urllib3
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-urllib3 1.22_0 >= py27-urllib3 1.22_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-certifi 2017.07.27_0 exists in the ports tree
:debug:main py27-certifi 2017.07.27_0  is the latest installed
:debug:main py27-certifi 2017.07.27_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-certifi
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-certifi 2017.07.27_0 >= py27-certifi 2017.07.27_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-six 1.10.0_0 exists in the ports tree
:debug:main py27-six 1.10.0_0  is the latest installed
:debug:main py27-six 1.10.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-six
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-six 1.10.0_0 >= py27-six 1.10.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-snowballstemmer 1.2.0_0 exists in the ports tree
:debug:main py27-snowballstemmer 1.2.0_0  is the latest installed
:debug:main py27-snowballstemmer 1.2.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-snowballstemmer
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-snowballstemmer 1.2.0_0 >= py27-snowballstemmer 1.2.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-sphinxcontrib-websupport 1.0.1_0 exists in the ports tree
:debug:main py27-sphinxcontrib-websupport 1.0.1_0  is the latest installed
:debug:main py27-sphinxcontrib-websupport 1.0.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-sphinxcontrib-websupport
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-sphinxcontrib-websupport 1.0.1_0 >= py27-sphinxcontrib-websupport 1.0.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main sphinx_select 0.1_0 exists in the ports tree
:debug:main sphinx_select 0.1_0  is the latest installed
:debug:main sphinx_select 0.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/sphinx_select
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Sourcing PortGroup select 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! sphinx_select 0.1_0 >= sphinx_select 0.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main py27-typing 3.6.1_0 exists in the ports tree
:debug:main py27-typing 3.6.1_0  is the latest installed
:debug:main py27-typing 3.6.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/python/py-typing
:debug:main OS darwin/16.7.0 (Mac OS X 10.12) arch i386
:debug:main Re-registering default for build.cmd
:debug:main Re-registering default for destroot.cmd
:debug:main Re-registering default for destroot.destdir
:debug:main Sourcing PortGroup python 1.0 from /opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/_resources/port1.0/group/python-1.0.tcl
:debug:main only one arch supported, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! py27-typing 3.6.1_0 >= py27-typing 3.6.1_0
:msg:main --->  Computing dependencies for bedtools:info:main .:debug:main bedtools has no conflicts
:debug:main Searching for dependency: py27-sphinx
:debug:main Found Dependency: receipt exists for py27-sphinx
:debug:main Searching for dependency: zlib
:debug:main Found Dependency: receipt exists for zlib
:debug:main Executing org.macports.main (bedtools)
:debug:main dropping privileges: euid changed to 502, egid changed to 501.
:debug:archivefetch archivefetch phase started at Mon Sep 25 13:33:04 CEST 2017
:msg:archivefetch --->  Fetching archive for bedtools
:debug:archivefetch Executing org.macports.archivefetch (bedtools)
:debug:archivefetch euid/egid changed to: 0/0
:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
:debug:archivefetch euid/egid changed to: 502/501
:info:archivefetch --->  bedtools-2.26.0_0.darwin_16.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
:msg:archivefetch --->  Attempting to fetch bedtools-2.26.0_0.darwin_16.x86_64.tbz2 from https://packages.macports.org/bedtools
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
:msg:archivefetch --->  Attempting to fetch bedtools-2.26.0_0.darwin_16.x86_64.tbz2 from http://lil.fr.packages.macports.org/bedtools
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
:msg:archivefetch --->  Attempting to fetch bedtools-2.26.0_0.darwin_16.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/bedtools
:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
:debug:archivefetch Privilege de-escalation not attempted as not running as root.
:debug:fetch fetch phase started at Mon Sep 25 13:33:04 CEST 2017
:notice:fetch --->  Fetching distfiles for bedtools
:debug:fetch Executing org.macports.fetch (bedtools)
:debug:fetch Privilege de-escalation not attempted as not running as root.
:debug:checksum checksum phase started at Mon Sep 25 13:33:04 CEST 2017
:notice:checksum --->  Verifying checksums for bedtools
:debug:checksum Executing org.macports.checksum (bedtools)
:info:checksum --->  Checksumming bedtools2-2.26.0.tar.gz
:debug:checksum Calculated (rmd160) is 880f6c0711f500f24a5f0161ef209c739c3cc735
:debug:checksum Correct (rmd160) checksum for bedtools2-2.26.0.tar.gz
:debug:checksum Calculated (sha256) is ed9e9305ed88838125de53abee0b65ef5decbd75beeeb3adb0cb656b87a965b2
:debug:checksum Correct (sha256) checksum for bedtools2-2.26.0.tar.gz
:debug:checksum Privilege de-escalation not attempted as not running as root.
:debug:extract extract phase started at Mon Sep 25 13:33:04 CEST 2017
:notice:extract --->  Extracting bedtools
:debug:extract Executing org.macports.extract (bedtools)
:info:extract --->  Extracting bedtools2-2.26.0.tar.gz
:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/bedtools/bedtools2-2.26.0.tar.gz'
:debug:extract Environment: 
:debug:extract CC_PRINT_OPTIONS='YES'
:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/.CC_PRINT_OPTIONS'
:debug:extract CPATH='/opt/local/include'
:debug:extract LIBRARY_PATH='/opt/local/lib'
:debug:extract MACOSX_DEPLOYMENT_TARGET='10.12'
:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/bedtools/bedtools2-2.26.0.tar.gz' | /usr/bin/tar -xf - 
:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/bedtools/bedtools2-2.26.0.tar.gz' | /usr/bin/tar -xf - 
:debug:extract euid/egid changed to: 0/0
:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work to macports
:debug:extract euid/egid changed to: 502/501
:debug:extract Executing proc-post-org.macports.extract-extract-0
:debug:extract Privilege de-escalation not attempted as not running as root.
:debug:patch patch phase started at Mon Sep 25 13:33:05 CEST 2017
:debug:patch Executing org.macports.patch (bedtools)
:notice:patch --->  Applying patches to bedtools
:info:patch --->  Applying patch-docs-conf.py.diff
:debug:patch Environment: 
:debug:patch CC_PRINT_OPTIONS='YES'
:debug:patch CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/.CC_PRINT_OPTIONS'
:debug:patch CPATH='/opt/local/include'
:debug:patch LIBRARY_PATH='/opt/local/lib'
:debug:patch MACOSX_DEPLOYMENT_TARGET='10.12'
:info:patch Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/bedtools/files/patch-docs-conf.py.diff'
:debug:patch system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/bedtools/files/patch-docs-conf.py.diff'
:info:patch patching file docs/conf.py
:debug:patch Privilege de-escalation not attempted as not running as root.
:debug:configure configure phase started at Mon Sep 25 13:33:05 CEST 2017
:notice:configure --->  Configuring bedtools
:debug:configure Preferred compilers: clang macports-clang-3.9 macports-clang-3.8 macports-clang-3.7
:debug:configure Using compiler 'Xcode Clang'
:debug:configure Executing org.macports.configure (bedtools)
:debug:configure Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Mon Sep 25 13:33:05 CEST 2017
:notice:build --->  Building bedtools
:debug:build Executing org.macports.build (bedtools)
:debug:build port disallows a parallel build
:debug:build Environment: 
:debug:build CC_PRINT_OPTIONS='YES'
:debug:build CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/.CC_PRINT_OPTIONS'
:debug:build CPATH='/opt/local/include'
:debug:build LIBRARY_PATH='/opt/local/lib'
:debug:build MACOSX_DEPLOYMENT_TARGET='10.12'
:info:build Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0" && /usr/bin/make -w all CXX=/usr/bin/clang++ CXXFLAGS="-O2 -Wall -D_FILE_OFFSET_BITS=64 -fPIC -stdlib=libc++ -arch x86_64" 
:debug:build system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0" && /usr/bin/make -w all CXX=/usr/bin/clang++ CXXFLAGS="-O2 -Wall -D_FILE_OFFSET_BITS=64 -fPIC -stdlib=libc++ -arch x86_64" 
:info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0'
:info:build Building BEDTools:
:info:build =========================================================
:info:build DETECTED_VERSION = v2.26.0
:info:build CURRENT_VERSION  = 
:info:build Updating version file.
:info:build  * Creating BamTools API
:info:build - Building in src/utils/FileRecordTools
:info:build   * compiling FileRecordMgr.cpp
:info:build In file included from FileRecordMgr.cpp:2:
:info:build In file included from ./FileRecordMgr.h:17:
:info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling FileRecordMergeMgr.cpp
:info:build In file included from FileRecordMergeMgr.cpp:9:
:info:build In file included from ./FileRecordMergeMgr.h:11:
:info:build In file included from ./FileRecordMgr.h:17:
:info:build In file included from ../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build - Building in FileReaders
:info:build   * compiling FileReader.cpp
:info:build In file included from FileReader.cpp:3:
:info:build In file included from ./FileReader.h:10:
:info:build In file included from ./BufferedStreamMgr.h:14:
:info:build In file included from ./InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling SingleLineDelimTextFileReader.cpp
:info:build In file included from SingleLineDelimTextFileReader.cpp:1:
:info:build In file included from ./SingleLineDelimTextFileReader.h:12:
:info:build In file included from ./FileReader.h:10:
:info:build In file included from ./BufferedStreamMgr.h:14:
:info:build In file included from ./InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling BamFileReader.cpp
:info:build In file included from BamFileReader.cpp:1:
:info:build In file included from ./BamFileReader.h:11:
:info:build In file included from ./FileReader.h:10:
:info:build In file included from ./BufferedStreamMgr.h:14:
:info:build In file included from ./InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling BufferedStreamMgr.cpp
:info:build In file included from BufferedStreamMgr.cpp:8:
:info:build In file included from ./BufferedStreamMgr.h:14:
:info:build In file included from ./InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling InputStreamMgr.cpp
:info:build In file included from InputStreamMgr.cpp:8:
:info:build In file included from ./InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build - Building in Records
:info:build   * compiling Record.cpp
:info:build   * compiling EmptyRecord.cpp
:info:build In file included from EmptyRecord.cpp:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling Bed3Interval.cpp
:info:build In file included from Bed3Interval.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling Bed4Interval.cpp
:info:build In file included from Bed4Interval.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling BedGraphInterval.cpp
:info:build In file included from BedGraphInterval.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling Bed5Interval.cpp
:info:build In file included from Bed5Interval.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling Bed6Interval.cpp
:info:build In file included from Bed6Interval.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling PlusFields.cpp
:info:build In file included from PlusFields.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling BedPlusInterval.cpp
:info:build In file included from BedPlusInterval.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling Bed12Interval.cpp
:info:build In file included from Bed12Interval.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling BamRecord.cpp
:info:build In file included from BamRecord.cpp:8:
:info:build In file included from ./BamRecord.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling GffRecord.cpp
:info:build In file included from GffRecord.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling GffPlusRecord.cpp
:info:build In file included from GffPlusRecord.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling VcfRecord.cpp
:info:build In file included from VcfRecord.cpp:9:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling NoPosPlusRecord.cpp
:info:build In file included from NoPosPlusRecord.cpp:2:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/SingleLineDelimTextFileReader.h:12:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/FileReader.h:10:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/BufferedStreamMgr.h:14:
:info:build In file included from ../../../utils//FileRecordTools/FileReaders/InputStreamMgr.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamReader.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling BlockMgr.cpp
:info:build In file included from BlockMgr.cpp:9:
:info:build In file included from ./RecordMgr.h:21:
:info:build In file included from ./BamRecord.h:14:
:info:build In file included from ../../../utils//BamTools/include/api/BamAlignment.h:15:
:info:build ../../../utils//BamTools/include/api/BamConstants.h:129:25: warning: implicit conversion from 'int' to 'const char' changes value from 139 to -117 [-Wconstant-conversion]
:info:build const char GZIP_ID2   = 139;
:info:build            ~~~~~~~~     ^~~
:info:build ../../../utils//BamTools/include/api/BamConstants.h:132:25: warning: implicit conversion from 'int' to 'const char' changes value from 255 to -1 [-Wconstant-conversion]
:info:build const char OS_UNKNOWN = 255;
:info:build            ~~~~~~~~~~   ^~~
:info:build 2 warnings generated.
:info:build   * compiling StrandQueue.cpp
:info:build In file included from StrandQueue.cpp:8:
:info:build In file included from ./StrandQueue.h:11:
:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/queue:405:5: error: static_assert failed ""
:info:build     static_assert((is_same<_Tp, value_type>::value), "" );
:info:build     ^             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
:info:build /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/include/c++/v1/__config:729:36: note: expanded from macro 'static_assert'
:info:build #   define static_assert(__b, __m) _Static_assert(__b, __m)
:info:build                                    ^              ~~~
:info:build StrandQueue.cpp:13:26: note: in instantiation of template class 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>' requested here
:info:build                 queueType *queue = new queueType();
:info:build                                        ^
:info:build StrandQueue.cpp:32:47: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build         return const_cast<Record *>(_queues[minIdx]->top());
:info:build                                     ~~~~~~~~~~~~~~~  ^
:info:build StrandQueue.cpp:38:19: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build         _queues[minIdx]->pop();
:info:build         ~~~~~~~~~~~~~~~  ^
:info:build StrandQueue.cpp:45:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 if (_queues[0]->empty()) return NULL;
:info:build                     ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:46:24: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 record = _queues[0]->top();
:info:build                          ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:49:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 if (_queues[1]->empty()) return NULL;
:info:build                     ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:51:24: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 record = _queues[1]->top();
:info:build                          ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:54:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 if (_queues[0]->empty()) return NULL;
:info:build                     ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:55:24: error: no member named 'top' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 record = _queues[2]->top();
:info:build                          ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:66:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 if (_queues[0]->empty()) return;
:info:build                     ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:67:15: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 _queues[0]->pop();
:info:build                 ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:70:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 if (_queues[1]->empty()) return;
:info:build                     ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:71:15: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 _queues[1]->pop();
:info:build                 ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:74:19: error: no member named 'empty' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 if (_queues[2]->empty()) return;
:info:build                     ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:75:15: error: no member named 'pop' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 _queues[2]->pop();
:info:build                 ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:85:15: error: no member named 'push' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 _queues[0]->push(record);
:info:build                 ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:88:15: error: no member named 'push' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 _queues[1]->push(record);
:info:build                 ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:91:15: error: no member named 'push' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 _queues[2]->push(record);
:info:build                 ~~~~~~~~~~  ^
:info:build StrandQueue.cpp:101:26: error: no member named 'size' in 'std::__1::priority_queue<Record *, std::__1::vector<const Record *, std::__1::allocator<const Record *> >, RecordPtrSortDescFunctor>'
:info:build                 sumSize += _queues[i]->size();
:info:build                            ~~~~~~~~~~  ^
:info:build fatal error: too many errors emitted, stopping now [-ferror-limit=]
:info:build 20 errors generated.
:info:build make[2]: *** [../../../../obj//StrandQueue.o] Error 1
:info:build make[1]: *** [Records] Error 2
:info:build make: *** [src/utils/FileRecordTools] Error 2
:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0'
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/work/bedtools2-2.26.0" && /usr/bin/make -w all CXX=/usr/bin/clang++ CXXFLAGS="-O2 -Wall -D_FILE_OFFSET_BITS=64 -fPIC -stdlib=libc++ -arch x86_64" 
:info:build Exit code: 2
:error:build Failed to build bedtools: command execution failed
:debug:build Error code: CHILDSTATUS 1438 2
:debug:build Backtrace: command execution failed
:debug:build     while executing
:debug:build "system {*}$notty {*}$nice $fullcmdstring"
:debug:build     invoked from within
:debug:build "command_exec build"
:debug:build     (procedure "portbuild::build_main" line 8)
:debug:build     invoked from within
:debug:build "$procedure $targetname"
:error:build See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_bedtools/bedtools/main.log for details.