Ticket #57111: main.log

File main.log, 35.4 KB (added by yi-fan-wang, 6 years ago)
Line 
1version:1
2:debug:sysinfo macOS 10.12 (darwin/16.7.0) arch i386
3:debug:sysinfo MacPorts 2.5.3
4:debug:sysinfo Xcode 8.2.1
5:debug:sysinfo SDK 10.12
6:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.12
7:msg:clean --->  Computing dependencies for hdf5:info:clean .:debug:clean hdf5 has no conflicts
8:debug:clean Searching for dependency: gcc7
9:debug:clean Found Dependency: receipt exists for gcc7
10:debug:clean Searching for dependency: zlib
11:debug:clean Found Dependency: receipt exists for zlib
12:debug:clean Searching for dependency: libgcc
13:debug:clean Found Dependency: receipt exists for libgcc
14:debug:clean Searching for dependency: libgcc7
15:debug:clean Found Dependency: receipt exists for libgcc7
16:debug:main Executing org.macports.main (hdf5)
17:debug:main dropping privileges: euid changed to 502, egid changed to 501.
18:debug:archivefetch archivefetch phase started at Sat Sep  8 21:26:50 HKT 2018
19:msg:archivefetch --->  Fetching archive for hdf5
20:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
21:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-1
22:debug:archivefetch mpi.enforce_variant list:
23:debug:archivefetch Executing org.macports.archivefetch (hdf5)
24:debug:archivefetch euid/egid changed to: 0/0
25:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
26:debug:archivefetch euid/egid changed to: 502/501
27:info:archivefetch --->  hdf5-1.10.2_0+cxx+fortran+gfortran+hl.darwin_16.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
28:msg:archivefetch --->  Attempting to fetch hdf5-1.10.2_0+cxx+fortran+gfortran+hl.darwin_16.x86_64.tbz2 from https://pek.cn.packages.macports.org/macports/packages/hdf5
29:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
30:msg:archivefetch --->  Attempting to fetch hdf5-1.10.2_0+cxx+fortran+gfortran+hl.darwin_16.x86_64.tbz2 from http://kmq.jp.packages.macports.org/hdf5
31:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
32:msg:archivefetch --->  Attempting to fetch hdf5-1.10.2_0+cxx+fortran+gfortran+hl.darwin_16.x86_64.tbz2 from http://jog.id.packages.macports.org/macports/packages/hdf5
33:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
34:debug:archivefetch Privilege de-escalation not attempted as not running as root.
35:debug:fetch fetch phase started at Sat Sep  8 21:26:51 HKT 2018
36:notice:fetch --->  Fetching distfiles for hdf5
37:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
38:debug:fetch Executing proc-pre-org.macports.fetch-fetch-1
39:debug:fetch mpi.enforce_variant list:
40:debug:fetch Executing org.macports.fetch (hdf5)
41:info:fetch --->  hdf5-1.10.2.tar.bz2 does not exist in /opt/local/var/macports/distfiles/hdf5
42:notice:fetch --->  Attempting to fetch hdf5-1.10.2.tar.bz2 from https://pek.cn.distfiles.macports.org/macports/distfiles/hdf5
43:debug:fetch Privilege de-escalation not attempted as not running as root.
44:debug:checksum checksum phase started at Sat Sep  8 21:27:10 HKT 2018
45:notice:checksum --->  Verifying checksums for hdf5
46:debug:checksum Executing org.macports.checksum (hdf5)
47:info:checksum --->  Checksumming hdf5-1.10.2.tar.bz2
48:debug:checksum Calculated (rmd160) is 1df1af071878997f04655212fa67360990861f5a
49:debug:checksum Correct (rmd160) checksum for hdf5-1.10.2.tar.bz2
50:debug:checksum Calculated (sha256) is 1cad5b7bfdf128dfc53cd16fba48f6e7ae4e93c75c371d9ec8dfc4df0c1fcb71
51:debug:checksum Correct (sha256) checksum for hdf5-1.10.2.tar.bz2
52:debug:checksum Calculated (size) is 8609163
53:debug:checksum Correct (size) checksum for hdf5-1.10.2.tar.bz2
54:debug:checksum Privilege de-escalation not attempted as not running as root.
55:debug:extract extract phase started at Sat Sep  8 21:27:10 HKT 2018
56:notice:extract --->  Extracting hdf5
57:debug:extract setting option extract.cmd to /usr/bin/bzip2
58:debug:extract Executing org.macports.extract (hdf5)
59:info:extract --->  Extracting hdf5-1.10.2.tar.bz2
60:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/hdf5/hdf5-1.10.2.tar.bz2'
61:debug:extract Environment:
62:debug:extract CC_PRINT_OPTIONS='YES'
63:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/.CC_PRINT_OPTIONS'
64:debug:extract CPATH='/opt/local/include'
65:debug:extract LIBRARY_PATH='/opt/local/lib'
66:debug:extract MACOSX_DEPLOYMENT_TARGET='10.12'
67:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/hdf5/hdf5-1.10.2.tar.bz2' | /usr/bin/tar -xf -
68:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work" && /usr/bin/bzip2 -dc '/opt/local/var/macports/distfiles/hdf5/hdf5-1.10.2.tar.bz2' | /usr/bin/tar -xf -
69:debug:extract euid/egid changed to: 0/0
70:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work to macports
71:debug:extract euid/egid changed to: 502/501
72:debug:extract Privilege de-escalation not attempted as not running as root.
73:debug:patch patch phase started at Sat Sep  8 21:27:15 HKT 2018
74:debug:patch Executing org.macports.patch (hdf5)
75:notice:patch --->  Applying patches to hdf5
76:info:patch --->  Applying patch-tools-src-misc-h5cc.in.diff
77:debug:patch Environment:
78:debug:patch CC_PRINT_OPTIONS='YES'
79:debug:patch CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/.CC_PRINT_OPTIONS'
80:debug:patch CPATH='/opt/local/include'
81:debug:patch LIBRARY_PATH='/opt/local/lib'
82:debug:patch MACOSX_DEPLOYMENT_TARGET='10.12'
83:info:patch Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5/files/patch-tools-src-misc-h5cc.in.diff'
84:debug:patch system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/hdf5/files/patch-tools-src-misc-h5cc.in.diff'
85:info:patch patching file tools/src/misc/h5cc.in
86:debug:patch Privilege de-escalation not attempted as not running as root.
87:debug:configure configure phase started at Sat Sep  8 21:27:15 HKT 2018
88:notice:configure --->  Configuring hdf5
89:debug:configure Preferred compilers: clang macports-clang-5.0 macports-clang-4.0 macports-clang-3.9
90:debug:configure Using compiler 'Xcode Clang'
91:debug:configure Executing proc-pre-org.macports.configure-configure-0
92:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: zlib libgcc libgcc7 gcc7
93:debug:configure Executing proc-pre-org.macports.configure-configure-1
94:debug:configure compilers.enforce_c list:
95:debug:configure compilers.enforce_fortran list:
96:debug:configure compilers.enforce_some_fortran list:
97:debug:configure Executing proc-pre-org.macports.configure-configure-2
98:debug:configure Executing org.macports.configure (hdf5)
99:debug:configure Environment:
100:debug:configure CC='/usr/bin/clang'
101:debug:configure CC_PRINT_OPTIONS='YES'
102:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/.CC_PRINT_OPTIONS'
103:debug:configure CFLAGS='-pipe -Os -arch x86_64'
104:debug:configure CPATH='/opt/local/include'
105:debug:configure CPPFLAGS='-I/opt/local/include'
106:debug:configure CXX='/usr/bin/clang++'
107:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
108:debug:configure F77='/opt/local/bin/gfortran-mp-7'
109:debug:configure F90='/opt/local/bin/gfortran-mp-7'
110:debug:configure F90FLAGS='-pipe -Os'
111:debug:configure FC='/opt/local/bin/gfortran-mp-7'
112:debug:configure FCFLAGS='-pipe -Os'
113:debug:configure FFLAGS='-pipe -Os'
114:debug:configure INSTALL='/usr/bin/install -c'
115:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
116:debug:configure LIBRARY_PATH='/opt/local/lib'
117:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
118:debug:configure OBJC='/usr/bin/clang'
119:debug:configure OBJCFLAGS='-pipe -Os -arch x86_64'
120:debug:configure OBJCXX='/usr/bin/clang++'
121:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
122:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
123:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
124:info:configure configure: WARNING: unrecognized options: --enable-fortran2003
125:info:configure checking for a BSD-compatible install... /usr/bin/install -c
126:info:configure checking whether build environment is sane... yes
127:info:configure checking for a thread-safe mkdir -p... bin/install-sh -c -d
128:info:configure checking for gawk... gawk
129:info:configure checking whether make sets $(MAKE)... yes
130:info:configure checking whether make supports nested variables... yes
131:info:configure checking whether make supports nested variables... (cached) yes
132:info:configure checking whether to enable maintainer-specific portions of Makefiles... no
133:info:configure checking build system type... x86_64-apple-darwin16.7.0
134:info:configure checking host system type... x86_64-apple-darwin16.7.0
135:info:configure checking shell variables initial values... done
136:info:configure checking if basename works... yes
137:info:configure checking if xargs works... yes
138:info:configure checking for cached host... none
139:info:configure checking for config x86_64-apple-darwin16.7.0... no
140:info:configure checking for config x86_64-apple-darwin16.7.0... no
141:info:configure checking for config apple-darwin16.7.0... no
142:info:configure checking for config apple-darwin16.7.0... no
143:info:configure checking for config x86_64-darwin16.7.0... no
144:info:configure checking for config x86_64-darwin16.7.0... no
145:info:configure checking for config x86_64-apple... no
146:info:configure checking for config darwin16.7.0... no
147:info:configure checking for config darwin16.7.0... no
148:info:configure checking for config apple... found
149:info:configure No match to get cc_version_info for /usr/bin/clang
150:info:configure compiler '/opt/local/bin/gfortran-mp-7' is GNU gfortran-7.3.0
151:info:configure checking for config ./config/site-specific/host-macbook... no
152:info:configure checking build mode... production
153:info:configure checking for gcc... /usr/bin/clang
154:info:configure checking whether the C compiler works... yes
155:info:configure checking for C compiler default output file name... a.out
156:info:configure checking for suffix of executables...
157:info:configure checking whether we are cross compiling... no
158:info:configure checking for suffix of object files... o
159:info:configure checking whether we are using the GNU C compiler... yes
160:info:configure checking whether /usr/bin/clang accepts -g... yes
161:info:configure checking for /usr/bin/clang option to accept ISO C89... none needed
162:info:configure checking whether /usr/bin/clang understands -c and -o together... yes
163:info:configure checking for style of include used by make... GNU
164:info:configure checking dependency style of /usr/bin/clang... gcc3
165:info:configure checking if unsupported combinations of configure options are allowed... no
166:info:configure checking how to run the C preprocessor... /usr/bin/clang -E
167:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
168:info:configure checking for egrep... /usr/bin/grep -E
169:info:configure checking for ANSI C header files... yes
170:info:configure checking for sys/types.h... yes
171:info:configure checking for sys/stat.h... yes
172:info:configure checking for stdlib.h... yes
173:info:configure checking for string.h... yes
174:info:configure checking for memory.h... yes
175:info:configure checking for strings.h... yes
176:info:configure checking for inttypes.h... yes
177:info:configure checking for stdint.h... yes
178:info:configure checking for unistd.h... yes
179:info:configure checking for off_t... yes
180:info:configure checking for size_t... yes
181:info:configure checking for ssize_t... yes
182:info:configure checking for ptrdiff_t... yes
183:info:configure checking whether byte ordering is bigendian... no
184:info:configure checking size of char... 1
185:info:configure checking size of short... 2
186:info:configure checking size of int... 4
187:info:configure checking size of unsigned... 4
188:info:configure checking size of long... 8
189:info:configure checking size of long long... 8
190:info:configure checking size of __int64... 0
191:info:configure checking size of float... 4
192:info:configure checking size of double... 8
193:info:configure checking size of long double... 16
194:info:configure checking size of __float128... 0
195:info:configure checking size of _Quad... 0
196:info:configure checking quadmath.h usability... no
197:info:configure checking quadmath.h presence... no
198:info:configure checking for quadmath.h... no
199:info:configure checking maximum decimal precision for C... 21
200:info:configure checking if Fortran interface enabled... yes
201:info:configure checking whether we are using the GNU Fortran compiler... no
202:info:configure checking whether /opt/local/bin/gfortran-mp-7 accepts -g... no
203:info:configure checking for Fortran flag to compile .f90 files... unknown
204:info:configure configure: error: Fortran could not compile .f90 files
205:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
206:info:configure Exit code: 1
207:error:configure Failed to configure hdf5, consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2/config.log
208:error:configure Failed to configure hdf5: configure failure: command execution failed
209:debug:configure Error code: NONE
210:debug:configure Backtrace: configure failure: command execution failed
211:debug:configure     while executing
212:debug:configure "$procedure $targetname"
213:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/main.log for details.
214version:1
215:debug:sysinfo macOS 10.12 (darwin/16.7.0) arch i386
216:debug:sysinfo MacPorts 2.5.3
217:debug:sysinfo Xcode 8.2.1
218:debug:sysinfo SDK 10.12
219:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.12
220:msg:main --->  Computing dependencies for hdf5:info:main .:debug:main hdf5 has no conflicts
221:debug:main Searching for dependency: gcc7
222:debug:main Found Dependency: receipt exists for gcc7
223:debug:main Searching for dependency: zlib
224:debug:main Found Dependency: receipt exists for zlib
225:debug:main Searching for dependency: libgcc
226:debug:main Found Dependency: receipt exists for libgcc
227:debug:main Searching for dependency: libgcc7
228:debug:main Found Dependency: receipt exists for libgcc7
229:debug:main Executing org.macports.main (hdf5)
230:debug:main dropping privileges: euid changed to 502, egid changed to 501.
231:debug:main Skipping completed org.macports.archivefetch (hdf5)
232:debug:main Privilege de-escalation not attempted as not running as root.
233:debug:main Skipping completed org.macports.fetch (hdf5)
234:debug:main Privilege de-escalation not attempted as not running as root.
235:debug:main Skipping completed org.macports.checksum (hdf5)
236:debug:main Privilege de-escalation not attempted as not running as root.
237:debug:main Skipping completed org.macports.extract (hdf5)
238:debug:main Privilege de-escalation not attempted as not running as root.
239:debug:main Skipping completed org.macports.patch (hdf5)
240:debug:main Privilege de-escalation not attempted as not running as root.
241:debug:configure configure phase started at Sun Sep  9 01:03:45 HKT 2018
242:notice:configure --->  Configuring hdf5
243:debug:configure Preferred compilers: clang macports-clang-5.0 macports-clang-4.0 macports-clang-3.9
244:debug:configure Using compiler 'Xcode Clang'
245:debug:configure Executing proc-pre-org.macports.configure-configure-0
246:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: zlib libgcc libgcc7 gcc7
247:debug:configure Executing proc-pre-org.macports.configure-configure-1
248:debug:configure compilers.enforce_c list:
249:debug:configure compilers.enforce_fortran list:
250:debug:configure compilers.enforce_some_fortran list:
251:debug:configure Executing proc-pre-org.macports.configure-configure-2
252:debug:configure Executing org.macports.configure (hdf5)
253:debug:configure Environment:
254:debug:configure CC='/usr/bin/clang'
255:debug:configure CC_PRINT_OPTIONS='YES'
256:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/.CC_PRINT_OPTIONS'
257:debug:configure CFLAGS='-pipe -Os -arch x86_64'
258:debug:configure CPATH='/opt/local/include'
259:debug:configure CPPFLAGS='-I/opt/local/include'
260:debug:configure CXX='/usr/bin/clang++'
261:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
262:debug:configure F77='/opt/local/bin/gfortran-mp-7'
263:debug:configure F90='/opt/local/bin/gfortran-mp-7'
264:debug:configure F90FLAGS='-pipe -Os'
265:debug:configure FC='/opt/local/bin/gfortran-mp-7'
266:debug:configure FCFLAGS='-pipe -Os'
267:debug:configure FFLAGS='-pipe -Os'
268:debug:configure INSTALL='/usr/bin/install -c'
269:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
270:debug:configure LIBRARY_PATH='/opt/local/lib'
271:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
272:debug:configure OBJC='/usr/bin/clang'
273:debug:configure OBJCFLAGS='-pipe -Os -arch x86_64'
274:debug:configure OBJCXX='/usr/bin/clang++'
275:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
276:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
277:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
278:info:configure configure: WARNING: unrecognized options: --enable-fortran2003
279:info:configure checking for a BSD-compatible install... /usr/bin/install -c
280:info:configure checking whether build environment is sane... yes
281:info:configure checking for a thread-safe mkdir -p... bin/install-sh -c -d
282:info:configure checking for gawk... gawk
283:info:configure checking whether make sets $(MAKE)... yes
284:info:configure checking whether make supports nested variables... yes
285:info:configure checking whether make supports nested variables... (cached) yes
286:info:configure checking whether to enable maintainer-specific portions of Makefiles... no
287:info:configure checking build system type... x86_64-apple-darwin16.7.0
288:info:configure checking host system type... x86_64-apple-darwin16.7.0
289:info:configure checking shell variables initial values... done
290:info:configure checking if basename works... yes
291:info:configure checking if xargs works... yes
292:info:configure checking for cached host... none
293:info:configure checking for config x86_64-apple-darwin16.7.0... no
294:info:configure checking for config x86_64-apple-darwin16.7.0... no
295:info:configure checking for config apple-darwin16.7.0... no
296:info:configure checking for config apple-darwin16.7.0... no
297:info:configure checking for config x86_64-darwin16.7.0... no
298:info:configure checking for config x86_64-darwin16.7.0... no
299:info:configure checking for config x86_64-apple... no
300:info:configure checking for config darwin16.7.0... no
301:info:configure checking for config darwin16.7.0... no
302:info:configure checking for config apple... found
303:info:configure No match to get cc_version_info for /usr/bin/clang
304:info:configure compiler '/opt/local/bin/gfortran-mp-7' is GNU gfortran-7.3.0
305:info:configure checking for config ./config/site-specific/host-macbook... no
306:info:configure checking build mode... production
307:info:configure checking for gcc... /usr/bin/clang
308:info:configure checking whether the C compiler works... yes
309:info:configure checking for C compiler default output file name... a.out
310:info:configure checking for suffix of executables...
311:info:configure checking whether we are cross compiling... no
312:info:configure checking for suffix of object files... o
313:info:configure checking whether we are using the GNU C compiler... yes
314:info:configure checking whether /usr/bin/clang accepts -g... yes
315:info:configure checking for /usr/bin/clang option to accept ISO C89... none needed
316:info:configure checking whether /usr/bin/clang understands -c and -o together... yes
317:info:configure checking for style of include used by make... GNU
318:info:configure checking dependency style of /usr/bin/clang... gcc3
319:info:configure checking if unsupported combinations of configure options are allowed... no
320:info:configure checking how to run the C preprocessor... /usr/bin/clang -E
321:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
322:info:configure checking for egrep... /usr/bin/grep -E
323:info:configure checking for ANSI C header files... yes
324:info:configure checking for sys/types.h... yes
325:info:configure checking for sys/stat.h... yes
326:info:configure checking for stdlib.h... yes
327:info:configure checking for string.h... yes
328:info:configure checking for memory.h... yes
329:info:configure checking for strings.h... yes
330:info:configure checking for inttypes.h... yes
331:info:configure checking for stdint.h... yes
332:info:configure checking for unistd.h... yes
333:info:configure checking for off_t... yes
334:info:configure checking for size_t... yes
335:info:configure checking for ssize_t... yes
336:info:configure checking for ptrdiff_t... yes
337:info:configure checking whether byte ordering is bigendian... no
338:info:configure checking size of char... 1
339:info:configure checking size of short... 2
340:info:configure checking size of int... 4
341:info:configure checking size of unsigned... 4
342:info:configure checking size of long... 8
343:info:configure checking size of long long... 8
344:info:configure checking size of __int64... 0
345:info:configure checking size of float... 4
346:info:configure checking size of double... 8
347:info:configure checking size of long double... 16
348:info:configure checking size of __float128... 0
349:info:configure checking size of _Quad... 0
350:info:configure checking quadmath.h usability... no
351:info:configure checking quadmath.h presence... no
352:info:configure checking for quadmath.h... no
353:info:configure checking maximum decimal precision for C... 21
354:info:configure checking if Fortran interface enabled... yes
355:info:configure checking whether we are using the GNU Fortran compiler... no
356:info:configure checking whether /opt/local/bin/gfortran-mp-7 accepts -g... no
357:info:configure checking for Fortran flag to compile .f90 files... unknown
358:info:configure configure: error: Fortran could not compile .f90 files
359:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
360:info:configure Exit code: 1
361:error:configure Failed to configure hdf5, consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2/config.log
362:error:configure Failed to configure hdf5: configure failure: command execution failed
363:debug:configure Error code: NONE
364:debug:configure Backtrace: configure failure: command execution failed
365:debug:configure     while executing
366:debug:configure "$procedure $targetname"
367:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/main.log for details.
368version:1
369:debug:sysinfo macOS 10.12 (darwin/16.7.0) arch i386
370:debug:sysinfo MacPorts 2.5.3
371:debug:sysinfo Xcode 8.2.1
372:debug:sysinfo SDK 10.12
373:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 10.12
374:msg:main --->  Computing dependencies for hdf5:info:main .:debug:main hdf5 has no conflicts
375:debug:main Searching for dependency: gcc7
376:debug:main Found Dependency: receipt exists for gcc7
377:debug:main Searching for dependency: zlib
378:debug:main Found Dependency: receipt exists for zlib
379:debug:main Searching for dependency: libgcc
380:debug:main Found Dependency: receipt exists for libgcc
381:debug:main Searching for dependency: libgcc7
382:debug:main Found Dependency: receipt exists for libgcc7
383:debug:main Executing org.macports.main (hdf5)
384:debug:main dropping privileges: euid changed to 502, egid changed to 501.
385:debug:main Skipping completed org.macports.archivefetch (hdf5)
386:debug:main Privilege de-escalation not attempted as not running as root.
387:debug:main Skipping completed org.macports.fetch (hdf5)
388:debug:main Privilege de-escalation not attempted as not running as root.
389:debug:main Skipping completed org.macports.checksum (hdf5)
390:debug:main Privilege de-escalation not attempted as not running as root.
391:debug:main Skipping completed org.macports.extract (hdf5)
392:debug:main Privilege de-escalation not attempted as not running as root.
393:debug:main Skipping completed org.macports.patch (hdf5)
394:debug:main Privilege de-escalation not attempted as not running as root.
395:debug:configure configure phase started at Sun Sep  9 01:05:07 HKT 2018
396:notice:configure --->  Configuring hdf5
397:debug:configure Preferred compilers: clang macports-clang-5.0 macports-clang-4.0 macports-clang-3.9
398:debug:configure Using compiler 'Xcode Clang'
399:debug:configure Executing proc-pre-org.macports.configure-configure-0
400:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: zlib libgcc libgcc7 gcc7
401:debug:configure Executing proc-pre-org.macports.configure-configure-1
402:debug:configure compilers.enforce_c list:
403:debug:configure compilers.enforce_fortran list:
404:debug:configure compilers.enforce_some_fortran list:
405:debug:configure Executing proc-pre-org.macports.configure-configure-2
406:debug:configure Executing org.macports.configure (hdf5)
407:debug:configure Environment:
408:debug:configure CC='/usr/bin/clang'
409:debug:configure CC_PRINT_OPTIONS='YES'
410:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/.CC_PRINT_OPTIONS'
411:debug:configure CFLAGS='-pipe -Os -arch x86_64'
412:debug:configure CPATH='/opt/local/include'
413:debug:configure CPPFLAGS='-I/opt/local/include'
414:debug:configure CXX='/usr/bin/clang++'
415:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
416:debug:configure F77='/opt/local/bin/gfortran-mp-7'
417:debug:configure F90='/opt/local/bin/gfortran-mp-7'
418:debug:configure F90FLAGS='-pipe -Os'
419:debug:configure FC='/opt/local/bin/gfortran-mp-7'
420:debug:configure FCFLAGS='-pipe -Os'
421:debug:configure FFLAGS='-pipe -Os'
422:debug:configure INSTALL='/usr/bin/install -c'
423:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names'
424:debug:configure LIBRARY_PATH='/opt/local/lib'
425:debug:configure MACOSX_DEPLOYMENT_TARGET='10.12'
426:debug:configure OBJC='/usr/bin/clang'
427:debug:configure OBJCFLAGS='-pipe -Os -arch x86_64'
428:debug:configure OBJCXX='/usr/bin/clang++'
429:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64'
430:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
431:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
432:info:configure configure: WARNING: unrecognized options: --enable-fortran2003
433:info:configure checking for a BSD-compatible install... /usr/bin/install -c
434:info:configure checking whether build environment is sane... yes
435:info:configure checking for a thread-safe mkdir -p... bin/install-sh -c -d
436:info:configure checking for gawk... gawk
437:info:configure checking whether make sets $(MAKE)... yes
438:info:configure checking whether make supports nested variables... yes
439:info:configure checking whether make supports nested variables... (cached) yes
440:info:configure checking whether to enable maintainer-specific portions of Makefiles... no
441:info:configure checking build system type... x86_64-apple-darwin16.7.0
442:info:configure checking host system type... x86_64-apple-darwin16.7.0
443:info:configure checking shell variables initial values... done
444:info:configure checking if basename works... yes
445:info:configure checking if xargs works... yes
446:info:configure checking for cached host... none
447:info:configure checking for config x86_64-apple-darwin16.7.0... no
448:info:configure checking for config x86_64-apple-darwin16.7.0... no
449:info:configure checking for config apple-darwin16.7.0... no
450:info:configure checking for config apple-darwin16.7.0... no
451:info:configure checking for config x86_64-darwin16.7.0... no
452:info:configure checking for config x86_64-darwin16.7.0... no
453:info:configure checking for config x86_64-apple... no
454:info:configure checking for config darwin16.7.0... no
455:info:configure checking for config darwin16.7.0... no
456:info:configure checking for config apple... found
457:info:configure No match to get cc_version_info for /usr/bin/clang
458:info:configure compiler '/opt/local/bin/gfortran-mp-7' is GNU gfortran-7.3.0
459:info:configure checking for config ./config/site-specific/host-macbook... no
460:info:configure checking build mode... production
461:info:configure checking for gcc... /usr/bin/clang
462:info:configure checking whether the C compiler works... yes
463:info:configure checking for C compiler default output file name... a.out
464:info:configure checking for suffix of executables...
465:info:configure checking whether we are cross compiling... no
466:info:configure checking for suffix of object files... o
467:info:configure checking whether we are using the GNU C compiler... yes
468:info:configure checking whether /usr/bin/clang accepts -g... yes
469:info:configure checking for /usr/bin/clang option to accept ISO C89... none needed
470:info:configure checking whether /usr/bin/clang understands -c and -o together... yes
471:info:configure checking for style of include used by make... GNU
472:info:configure checking dependency style of /usr/bin/clang... gcc3
473:info:configure checking if unsupported combinations of configure options are allowed... no
474:info:configure checking how to run the C preprocessor... /usr/bin/clang -E
475:info:configure checking for grep that handles long lines and -e... /usr/bin/grep
476:info:configure checking for egrep... /usr/bin/grep -E
477:info:configure checking for ANSI C header files... yes
478:info:configure checking for sys/types.h... yes
479:info:configure checking for sys/stat.h... yes
480:info:configure checking for stdlib.h... yes
481:info:configure checking for string.h... yes
482:info:configure checking for memory.h... yes
483:info:configure checking for strings.h... yes
484:info:configure checking for inttypes.h... yes
485:info:configure checking for stdint.h... yes
486:info:configure checking for unistd.h... yes
487:info:configure checking for off_t... yes
488:info:configure checking for size_t... yes
489:info:configure checking for ssize_t... yes
490:info:configure checking for ptrdiff_t... yes
491:info:configure checking whether byte ordering is bigendian... no
492:info:configure checking size of char... 1
493:info:configure checking size of short... 2
494:info:configure checking size of int... 4
495:info:configure checking size of unsigned... 4
496:info:configure checking size of long... 8
497:info:configure checking size of long long... 8
498:info:configure checking size of __int64... 0
499:info:configure checking size of float... 4
500:info:configure checking size of double... 8
501:info:configure checking size of long double... 16
502:info:configure checking size of __float128... 0
503:info:configure checking size of _Quad... 0
504:info:configure checking quadmath.h usability... no
505:info:configure checking quadmath.h presence... no
506:info:configure checking for quadmath.h... no
507:info:configure checking maximum decimal precision for C... 21
508:info:configure checking if Fortran interface enabled... yes
509:info:configure checking whether we are using the GNU Fortran compiler... no
510:info:configure checking whether /opt/local/bin/gfortran-mp-7 accepts -g... no
511:info:configure checking for Fortran flag to compile .f90 files... unknown
512:info:configure configure: error: Fortran could not compile .f90 files
513:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2" && ./configure --prefix=/opt/local --with-zlib=yes --enable-build-mode=production --enable-shared --enable-static --disable-parallel --disable-threadsafe --with-default-plugindir=/opt/local/lib/hdf5 --enable-hl --enable-cxx --enable-fortran --enable-fortran2003
514:info:configure Exit code: 1
515:error:configure Failed to configure hdf5, consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/work/hdf5-1.10.2/config.log
516:error:configure Failed to configure hdf5: configure failure: command execution failed
517:debug:configure Error code: NONE
518:debug:configure Backtrace: configure failure: command execution failed
519:debug:configure     while executing
520:debug:configure "$procedure $targetname"
521:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_science_hdf5/hdf5/main.log for details.