Ticket #62513: Failed_to_build_ncbi_tools_main.log

File Failed_to_build_ncbi_tools_main.log, 200.6 KB (added by seanhemmingsen, 4 years ago)
Line 
1version:1
2:debug:sysinfo macOS 11.2 (darwin/20.3.0) arch arm
3:debug:sysinfo MacPorts 2.6.4
4:debug:sysinfo Xcode none
5:debug:sysinfo SDK 11.2
6:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 11.2
7:debug:main ncbi_tools has no conflicts
8:debug:main Executing org.macports.main (ncbi_tools)
9:debug:main dropping privileges: euid changed to 504, egid changed to 501.
10:debug:archivefetch archivefetch phase started at Sun Mar 21 20:06:39 CST 2021
11:msg:archivefetch --->  Fetching archive for ncbi_tools
12:debug:archivefetch Executing org.macports.archivefetch (ncbi_tools)
13:debug:archivefetch euid/egid changed to: 0/0
14:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
15:debug:archivefetch euid/egid changed to: 504/501
16:info:archivefetch --->  ncbi_tools-20080302_0.darwin_20.arm64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
17:msg:archivefetch --->  Attempting to fetch ncbi_tools-20080302_0.darwin_20.arm64.tbz2 from https://ywg.ca.packages.macports.org/mirror/macports/packages/ncbi_tools
18:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
19:msg:archivefetch --->  Attempting to fetch ncbi_tools-20080302_0.darwin_20.arm64.tbz2 from https://mse.uk.packages.macports.org/ncbi_tools
20:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
21:msg:archivefetch --->  Attempting to fetch ncbi_tools-20080302_0.darwin_20.arm64.tbz2 from https://cph.dk.packages.macports.org/ncbi_tools
22:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
23:debug:archivefetch Privilege de-escalation not attempted as not running as root.
24:debug:fetch fetch phase started at Sun Mar 21 20:06:44 CST 2021
25:notice:fetch --->  Fetching distfiles for ncbi_tools
26:debug:fetch Executing org.macports.fetch (ncbi_tools)
27:debug:fetch Privilege de-escalation not attempted as not running as root.
28:debug:checksum checksum phase started at Sun Mar 21 20:06:44 CST 2021
29:notice:checksum --->  Verifying checksums for ncbi_tools
30:debug:checksum Executing org.macports.checksum (ncbi_tools)
31:info:checksum --->  Checksumming ncbi.tar.gz
32:debug:checksum Calculated (md5) is f8de9d7264aed7de1d87d2185df2e07c
33:debug:checksum Correct (md5) checksum for ncbi.tar.gz
34:debug:checksum Privilege de-escalation not attempted as not running as root.
35:debug:extract extract phase started at Sun Mar 21 20:06:45 CST 2021
36:notice:extract --->  Extracting ncbi_tools
37:debug:extract Extracting to subdirectory worksrcdir
38:debug:extract Executing org.macports.extract (ncbi_tools)
39:info:extract --->  Extracting ncbi.tar.gz
40:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/ncbi_tools/20080302/ncbi.tar.gz'
41:debug:extract Environment:
42:debug:extract CC_PRINT_OPTIONS='YES'
43:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
44:debug:extract CPATH='/opt/local/include'
45:debug:extract DEVELOPER_DIR='/Library/Developer/CommandLineTools'
46:debug:extract LIBRARY_PATH='/opt/local/lib'
47:debug:extract MACOSX_DEPLOYMENT_TARGET='11.2'
48:debug:extract SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
49:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/ncbi_tools/20080302/ncbi.tar.gz' | /usr/bin/tar -xf -
50:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/ncbi_tools/20080302/ncbi.tar.gz' | /usr/bin/tar -xf -
51:debug:extract euid/egid changed to: 0/0
52:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302 to macports
53:debug:extract euid/egid changed to: 504/501
54:debug:extract Privilege de-escalation not attempted as not running as root.
55:debug:patch patch phase started at Sun Mar 21 20:06:45 CST 2021
56:debug:patch Executing org.macports.patch (ncbi_tools)
57:notice:patch --->  Applying patches to ncbi_tools
58:info:patch --->  Applying darwin.ncbi.mk.diff
59:debug:patch Environment:
60:debug:patch CC_PRINT_OPTIONS='YES'
61:debug:patch CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
62:debug:patch CPATH='/opt/local/include'
63:debug:patch DEVELOPER_DIR='/Library/Developer/CommandLineTools'
64:debug:patch LIBRARY_PATH='/opt/local/lib'
65:debug:patch MACOSX_DEPLOYMENT_TARGET='11.2'
66:debug:patch SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
67:info:patch Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/darwin.ncbi.mk.diff'
68:debug:patch system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/darwin.ncbi.mk.diff'
69:info:patch patching file ncbi/platform/darwin.ncbi.mk
70:info:patch --->  Applying c-toolkit-no-carbon.patch
71:debug:patch Environment:
72:debug:patch CC_PRINT_OPTIONS='YES'
73:debug:patch CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
74:debug:patch CPATH='/opt/local/include'
75:debug:patch DEVELOPER_DIR='/Library/Developer/CommandLineTools'
76:debug:patch LIBRARY_PATH='/opt/local/lib'
77:debug:patch MACOSX_DEPLOYMENT_TARGET='11.2'
78:debug:patch SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
79:info:patch Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/c-toolkit-no-carbon.patch'
80:debug:patch system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/macports/release/tarballs/ports/science/ncbi_tools/files/c-toolkit-no-carbon.patch'
81:info:patch patching file ncbi/corelib/ncbienv.c
82:info:patch Hunk #1 succeeded at 1932 (offset -6 lines).
83:info:patch Hunk #2 succeeded at 2047 (offset -6 lines).
84:info:patch Hunk #3 succeeded at 2240 (offset -4 lines).
85:info:patch Hunk #4 succeeded at 2419 (offset -5 lines).
86:info:patch patching file ncbi/corelib/ncbiwin.h
87:info:patch patching file ncbi/make/makedis.csh
88:info:patch Hunk #1 succeeded at 235 (offset -5 lines).
89:debug:patch Privilege de-escalation not attempted as not running as root.
90:debug:configure configure phase started at Sun Mar 21 20:06:45 CST 2021
91:notice:configure --->  Configuring ncbi_tools
92:debug:configure Preferred compilers: clang macports-clang-11
93:debug:configure Using compiler 'Xcode Clang'
94:debug:configure Executing org.macports.configure (ncbi_tools)
95:debug:configure Privilege de-escalation not attempted as not running as root.
96:debug:build build phase started at Sun Mar 21 20:06:45 CST 2021
97:notice:build --->  Building ncbi_tools
98:debug:build Executing org.macports.build (ncbi_tools)
99:debug:build port disallows a parallel build
100:debug:build Environment:
101:debug:build CC_PRINT_OPTIONS='YES'
102:debug:build CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/.CC_PRINT_OPTIONS'
103:debug:build CPATH='/opt/local/include'
104:debug:build DEVELOPER_DIR='/Library/Developer/CommandLineTools'
105:debug:build LIBRARY_PATH='/opt/local/lib'
106:debug:build MACOSX_DEPLOYMENT_TARGET='11.2'
107:debug:build SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk'
108:info:build Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && './ncbi/make/makedis.csh'
109:debug:build system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && './ncbi/make/makedis.csh'
110:info:build platform is darwin
111:info:build Darwin NRC-023669 20.3.0 Darwin Kernel Version 20.3.0: Thu Jan 21 00:06:51 PST 2021; root:xnu-7195.81.3~1/RELEASE_ARM64_T8101 arm64
112:info:build Disabling assert().
113:info:build BLAST version is 2.2.18
114:info:build make CFLAGS1="-DNDEBUG -O2 -c " LDFLAGS1="-framework CoreServices -O2" OTHERLIBS="-lc" SHELL="/bin/sh" LCL="dwn" RAN="ranlib" AR="ar" CC="cc -pipe" all
115:info:build chmod -R ug+rw,o+r . ../include
116:info:build ./ln-if-absent ../corelib/tsprintf.h ../include
117:info:build ./ln-if-absent ../corelib/gifgen.h ../include
118:info:build ./ln-if-absent ../corelib/ncbi*.h ../include
119:info:build ./ln-if-absent ../corelib/tree*.h ../include
120:info:build ./ln-if-absent ../corelib/regex.h ../include
121:info:build ./ln-if-absent ../corelib/matrix.h ../include
122:info:build ./ln-if-absent ../corelib/binary.h ../include
123:info:build ./ln-if-absent ../corelib/morefile/*.h ../include
124:info:build ./ln-if-absent ../corelib/morefile/*.c .
125:info:build ./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
126:info:build ./ln-if-absent ../corelib/ncbilcl.dwn ../include/ncbilcl.h
127:info:build ./ln-if-absent ../corelib/*.c .
128:info:build ./ln-if-absent ../corelib/core*.h .
129:info:build ./ln-if-absent ../asnlib/*.h .
130:info:build mv asn.h ../include
131:info:build ./ln-if-absent ../asnlib/*.c .
132:info:build ./ln-if-absent ../connect/*.c .
133:info:build ./ln-if-absent ../connect/ncbi_ansi_ext.h .
134:info:build ./ln-if-absent ../connect/ncbi_assert.h .
135:info:build ./ln-if-absent ../connect/ncbi_priv.h .
136:info:build ./ln-if-absent ../connect/ncbi_comm.h .
137:info:build ./ln-if-absent ../connect/ncbi_config.h .
138:info:build ./ln-if-absent ../connect/ncbi_lbsm.h .
139:info:build make: [copy] Error 1 (ignored)
140:info:build ./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
141:info:build make: [copy] Error 1 (ignored)
142:info:build ./ln-if-absent ../connect/ncbi_host_infop.h .
143:info:build ./ln-if-absent ../connect/ncbi_server_infop.h .
144:info:build ./ln-if-absent ../connect/ncbi_servicep.h .
145:info:build ./ln-if-absent ../connect/ncbi_dispd.h .
146:info:build ./ln-if-absent ../connect/ncbi_lbsmd.h .
147:info:build ./ln-if-absent ../connect/ncbi_local.h .
148:info:build ./ln-if-absent ../connect/ncbi_lb.h .
149:info:build ./ln-if-absent ../connect/*.h ../include
150:info:build mkdir ../include/connect
151:info:build chmod ug+rw,o+r ../include/connect
152:info:build rm ../include/ncbi_*.h ../include/connect_export.h
153:info:build cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
154:info:build ./ln-if-absent ../util/tables/*.c .
155:info:build mkdir -p ../include/util/tables
156:info:build cp -fp ../util/tables/*.h ../include/util/tables
157:info:build ./ln-if-absent ../util/creaders/*.c .
158:info:build mkdir -p ../include/util/creaders
159:info:build cp -fp ../util/creaders/*.h ../include/util/creaders
160:info:build ./ln-if-absent ../ctools/*.c .
161:info:build ./ln-if-absent ../ctools/*.h .
162:info:build mkdir ../include/ctools
163:info:build chmod ug+rw,o+r ../include/ctools
164:info:build cp -fp ../ctools/*.h ../include/ctools
165:info:build ./ln-if-absent ../object/*.c .
166:info:build ./ln-if-absent ../object/*.h ../include
167:info:build ./ln-if-absent ../access/*.c .
168:info:build ./ln-if-absent ../access/*.h ../include
169:info:build ./ln-if-absent ../asnstat/*.h ../include
170:info:build ./ln-if-absent ../api/*.h ../include
171:info:build ./ln-if-absent ../api/*.c .
172:info:build ./ln-if-absent ../cdromlib/*.h ../include
173:info:build ./ln-if-absent ../cdromlib/*.c .
174:info:build ./ln-if-absent ../vibrant/*.h ../include
175:info:build ./ln-if-absent ../vibrant/*.c .
176:info:build ./ln-if-absent ../desktop/*.h ../include
177:info:build ./ln-if-absent ../desktop/*.c .
178:info:build ./ln-if-absent ../biostruc/*.h ../include
179:info:build ./ln-if-absent ../biostruc/*.c .
180:info:build ./ln-if-absent ../biostruc/cdd/*.h ../include
181:info:build ./ln-if-absent ../biostruc/cdd/*.c .
182:info:build ./ln-if-absent ../biostruc/cn3d/*.h ../include
183:info:build ./ln-if-absent ../biostruc/cn3d/*.c .
184:info:build ./ln-if-absent ../tools/*.h ../include
185:info:build ./ln-if-absent ../tools/*.c .
186:info:build ./ln-if-absent ../cn3d/*.h ../include
187:info:build ./ln-if-absent ../cn3d/*.c .
188:info:build ./ln-if-absent ../gif/*.c .
189:info:build ./ln-if-absent ../gif/*.h ../include
190:info:build ./ln-if-absent ../ddv/*.h ../include
191:info:build ./ln-if-absent ../ddv/*.c .
192:info:build ./ln-if-absent ../regexp/*.c .
193:info:build ./ln-if-absent ../regexp/*.h ../include
194:info:build ./ln-if-absent ../internal/compr/*.c .
195:info:build set: No match.
196:info:build make: [copy] Error 1 (ignored)
197:info:build ./ln-if-absent ../internal/compr/*.h ../include
198:info:build set: No match.
199:info:build make: [copy] Error 1 (ignored)
200:info:build ./ln-if-absent ../internal/libindx/*.c .
201:info:build set: No match.
202:info:build make: [copy] Error 1 (ignored)
203:info:build ./ln-if-absent ../internal/libindx/*.h ../include
204:info:build set: No match.
205:info:build make: [copy] Error 1 (ignored)
206:info:build ./ln-if-absent ../internal/libpars/*.c .
207:info:build set: No match.
208:info:build make: [copy] Error 1 (ignored)
209:info:build ./ln-if-absent ../internal/libpars/*.h ../include
210:info:build set: No match.
211:info:build make: [copy] Error 1 (ignored)
212:info:build ./ln-if-absent ../internal/ideogram/*.c .
213:info:build set: No match.
214:info:build make: [copy] Error 1 (ignored)
215:info:build ./ln-if-absent ../internal/ideogram/*.dat .
216:info:build set: No match.
217:info:build make: [copy] Error 1 (ignored)
218:info:build ./ln-if-absent ../internal/ideogram/ideochr*.h ../include
219:info:build set: No match.
220:info:build make: [copy] Error 1 (ignored)
221:info:build ./ln-if-absent ../internal/ideogram/ideoorgs.h .
222:info:build make: [copy] Error 1 (ignored)
223:info:build ./ln-if-absent ../internal/ccap/*.c .
224:info:build set: No match.
225:info:build make: [copy] Error 1 (ignored)
226:info:build ./ln-if-absent ../internal/ccap/*.dat .
227:info:build set: No match.
228:info:build make: [copy] Error 1 (ignored)
229:info:build ./ln-if-absent ../internal/ccap/*.h ../include
230:info:build set: No match.
231:info:build make: [copy] Error 1 (ignored)
232:info:build ./ln-if-absent ncbidraw.c ncbidrwg.c
233:info:build ./ln-if-absent ncbithr.c ncbithrs.c
234:info:build ./ln-if-absent ../network/nsclilib/*.h ../include
235:info:build ./ln-if-absent ../network/blast3/client/*.h ../include
236:info:build ./ln-if-absent ../network/id1arch/*.h ../include
237:info:build ./ln-if-absent ../network/id2arch/*.h ../include
238:info:build mkdir -p ../include/algo/blast/core
239:info:build ./ln-if-absent ../algo/blast/core/*.c .
240:info:build ./ln-if-absent ../algo/blast/core/*.h .
241:info:build cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
242:info:build mkdir -p ../include/algo/blast/composition_adjustment
243:info:build ./ln-if-absent ../algo/blast/composition_adjustment/*.c .
244:info:build ./ln-if-absent ../algo/blast/composition_adjustment/*.h ../include
245:info:build cp -fp ../algo/blast/composition_adjustment/*.h \
246:info:build             ../include/algo/blast/composition_adjustment
247:info:build mkdir -p ../include/algo/blast/api
248:info:build ./ln-if-absent ../algo/blast/api/*.c .
249:info:build cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
250:info:build chmod -R ug+rw,o+r .
251:info:build echo Waiting...go
252:info:build Waiting...go
253:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbithr.c
254:info:build cp -p ncbithr.o ../lib
255:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbimain.c
256:info:build ncbimain.c:81:1: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
257:info:build main(int argc, char *argv[])
258:info:build ^
259:info:build 1 warning generated.
260:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbibs.c
261:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  wwwutils.c
262:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbierr.c
263:info:build ncbierr.c:952:31: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
264:info:build             strncat(path,file,sizeof(path));
265:info:build                               ^~~~~~~~~~~~
266:info:build ncbierr.c:952:31: note: change the argument to be the free space in the destination buffer minus the terminating null byte
267:info:build             strncat(path,file,sizeof(path));
268:info:build                               ^~~~~~~~~~~~
269:info:build                               sizeof(path) - strlen(path) - 1
270:info:build ncbierr.c:1377:13: warning: comparison of array 'info->logfile' not equal to a null pointer is always true [-Wtautological-pointer-compare]
271:info:build   if (info->logfile != NULL  &&  *info->logfile == '\0')
272:info:build       ~~~~~~^~~~~~~    ~~~~
273:info:build 2 warnings generated.
274:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbienv.c
275:info:build ncbienv.c:2008:11: warning: 'FSPathMakeRef' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
276:info:build     err = FSPathMakeRef ((unsigned char *) aPath, &contentsFRef, &isDirectory);
277:info:build           ^
278:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Files.h:4115:18: note: 'FSPathMakeRef' has been explicitly marked deprecated here
279:info:build extern OSStatus  FSPathMakeRef(const UInt8 *path, FSRef *ref, Boolean *isDirectory)        __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
280:info:build                  ^
281:info:build ncbienv.c:2455:10: warning: 'Gestalt' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
282:info:build     if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
283:info:build          ^
284:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:123:1: note: 'Gestalt' has been explicitly marked deprecated here
285:info:build Gestalt(
286:info:build ^
287:info:build ncbienv.c:2455:19: warning: 'gestaltSystemVersion' is deprecated: first deprecated in macOS 10.8 - Use NSProcessInfo's operatingSystemVersion property instead. [-Wdeprecated-declarations]
288:info:build     if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
289:info:build                   ^
290:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:2081:1: note: '' has been explicitly marked deprecated here
291:info:build enum {
292:info:build ^
293:info:build ncbienv.c:2474:10: warning: 'Gestalt' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
294:info:build     if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
295:info:build          ^
296:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:123:1: note: 'Gestalt' has been explicitly marked deprecated here
297:info:build Gestalt(
298:info:build ^
299:info:build ncbienv.c:2474:19: warning: 'gestaltSystemVersion' is deprecated: first deprecated in macOS 10.8 - Use NSProcessInfo's operatingSystemVersion property instead. [-Wdeprecated-declarations]
300:info:build     if ( Gestalt (gestaltSystemVersion, &sysVer) == noErr) {
301:info:build                   ^
302:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/Gestalt.h:2081:1: note: '' has been explicitly marked deprecated here
303:info:build enum {
304:info:build ^
305:info:build 5 warnings generated.
306:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbifile.c
307:info:build ncbifile.c:1374:16: warning: 'tempnam' is deprecated: This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of tempnam(3), it is highly recommended that you use mkstemp(3) instead. [-Wdeprecated-declarations]
308:info:build     filename = tempnam("/tmp", "ncbi.");
309:info:build                ^
310:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:302:1: note: 'tempnam' has been explicitly marked deprecated here
311:info:build __deprecated_msg("This function is provided for compatibility reasons only.  Due to security concerns inherent in the design of tempnam(3), it is highly recommended that you use mkstemp(3) instead.")
312:info:build ^
313:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/sys/cdefs.h:200:48: note: expanded from macro '__deprecated_msg'
314:info:build         #define __deprecated_msg(_msg) __attribute__((__deprecated__(_msg)))
315:info:build                                                       ^
316:info:build 1 warning generated.
317:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbiprop.c
318:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbimath.c
319:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbimem.c
320:info:build ncbimem.c:551:24: warning: 'NewHandle' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
321:info:build     hnd = (Nlm_Handle) NewHandle (size);
322:info:build                        ^
323:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:451:1: note: 'NewHandle' has been explicitly marked deprecated here
324:info:build NewHandle(Size byteCount)                                     __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
325:info:build ^
326:info:build ncbimem.c:623:5: warning: 'SetHandleSize' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
327:info:build     SetHandleSize ((Handle)hnd, (Size)size);
328:info:build     ^
329:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:1321:1: note: 'SetHandleSize' has been explicitly marked deprecated here
330:info:build SetHandleSize(
331:info:build ^
332:info:build ncbimem.c:625:9: warning: 'MemError' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
333:info:build     if (MemError() != noErr)
334:info:build         ^
335:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:330:1: note: 'MemError' has been explicitly marked deprecated here
336:info:build MemError(void)                                                __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
337:info:build ^
338:info:build ncbimem.c:663:9: warning: 'DisposeHandle' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
339:info:build         DisposeHandle ((Handle) hnd);
340:info:build         ^
341:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:1278:1: note: 'DisposeHandle' has been explicitly marked deprecated here
342:info:build DisposeHandle(Handle h)                                       __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
343:info:build ^
344:info:build ncbimem.c:704:5: warning: 'HLock' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
345:info:build     HLock ((Handle) hnd);
346:info:build     ^
347:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:725:1: note: 'HLock' has been explicitly marked deprecated here
348:info:build HLock(Handle h)                                               __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
349:info:build ^
350:info:build ncbimem.c:739:9: warning: 'HUnlock' is deprecated: first deprecated in macOS 10.8 [-Wdeprecated-declarations]
351:info:build         HUnlock ((Handle) hnd);
352:info:build         ^
353:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/System/Library/Frameworks/CoreServices.framework/Frameworks/CarbonCore.framework/Headers/MacMemory.h:791:1: note: 'HUnlock' has been explicitly marked deprecated here
354:info:build HUnlock(Handle h)                                             __OSX_AVAILABLE_BUT_DEPRECATED(__MAC_10_0, __MAC_10_8, __IPHONE_NA, __IPHONE_NA);
355:info:build ^
356:info:build 6 warnings generated.
357:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbimisc.c
358:info:build ncbimisc.c:1942:27: warning: 'memset' call operates on objects of type 'struct md5context_' while the size is based on a different type 'Nlm_MD5ContextPtr' (aka 'struct md5context_ *') [-Wsizeof-pointer-memaccess]
359:info:build     memset(ctx, 0, sizeof(ctx));        /* In case it's sensitive */
360:info:build            ~~~            ^~~
361:info:build ncbimisc.c:1942:27: note: did you mean to dereference the argument to 'sizeof' (and multiply it by the number of elements)?
362:info:build     memset(ctx, 0, sizeof(ctx));        /* In case it's sensitive */
363:info:build                           ^~~
364:info:build 1 warning generated.
365:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbimsg.c
366:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbistr.c
367:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbisgml.c
368:info:build ncbisgml.c:191:30: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
369:info:build     strncat(buf,"sgmlbb.ent",sizeof buf);
370:info:build                              ^~~~~~~~~~
371:info:build ncbisgml.c:191:30: note: change the argument to be the free space in the destination buffer minus the terminating null byte
372:info:build     strncat(buf,"sgmlbb.ent",sizeof buf);
373:info:build                              ^~~~~~~~~~
374:info:build                              sizeof(buf) - strlen(buf) - 1
375:info:build 1 warning generated.
376:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbitime.c
377:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbilang.c
378:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asnbufo.c
379:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asndebin.c
380:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asnenbin.c
381:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asngen.c
382:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asnio.c
383:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asnlex.c
384:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asnlext.c
385:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asnout.c
386:info:build asnout.c:160:15: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
387:info:build                 fprintf(fp, headerlines[i]);
388:info:build                             ^~~~~~~~~~~~~~
389:info:build asnout.c:160:15: note: treat the string as an argument to avoid this
390:info:build                 fprintf(fp, headerlines[i]);
391:info:build                             ^
392:info:build                             "%s",
393:info:build 1 warning generated.
394:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asnprint.c
395:info:build asnprint.c:198:7: warning: expression result unused [-Wunused-value]
396:info:build         for (currmod; currmod != NULL; currmod = currmod->next)
397:info:build              ^~~~~~~
398:info:build 1 warning generated.
399:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asntypes.c
400:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asngenob.c
401:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gifgen.c
402:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  togif.c
403:info:build cc -pipe -DNCBI_NOTHREADS_AVAIL -DNDEBUG -O2 -c  -I../include  ncbithrs.c
404:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DHAVE_STRING_H -DREGEX_MALLOC regex.c
405:info:build regex.c:1661:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
406:info:build                 else
407:info:build                 ^
408:info:build regex.c:1681:17: warning: add explicit braces to avoid dangling else [-Wdangling-else]
409:info:build                 else
410:info:build                 ^
411:info:build regex.c:3764:19: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
412:info:build                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
413:info:build                   ^
414:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
415:info:build     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
416:info:build     ^
417:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
418:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
419:info:build                                          ^
420:info:build regex.c:3764:19: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
421:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
422:info:build     PUSH_FAILURE_ITEM (highest_active_reg);                             \
423:info:build     ^
424:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
425:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
426:info:build                                          ^
427:info:build regex.c:3911:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
428:info:build           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
429:info:build           ^
430:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
431:info:build     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
432:info:build     ^
433:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
434:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
435:info:build                                          ^
436:info:build regex.c:3911:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
437:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
438:info:build     PUSH_FAILURE_ITEM (highest_active_reg);                             \
439:info:build     ^
440:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
441:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
442:info:build                                          ^
443:info:build regex.c:3964:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
444:info:build           PUSH_FAILURE_POINT (p + mcnt, d, -2);
445:info:build           ^
446:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
447:info:build     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
448:info:build     ^
449:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
450:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
451:info:build                                          ^
452:info:build regex.c:3964:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
453:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
454:info:build     PUSH_FAILURE_ITEM (highest_active_reg);                             \
455:info:build     ^
456:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
457:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
458:info:build                                          ^
459:info:build regex.c:4103:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
460:info:build           PUSH_FAILURE_POINT (0, 0, -2);
461:info:build           ^
462:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
463:info:build     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
464:info:build     ^
465:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
466:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
467:info:build                                          ^
468:info:build regex.c:4103:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
469:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
470:info:build     PUSH_FAILURE_ITEM (highest_active_reg);                             \
471:info:build     ^
472:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
473:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
474:info:build                                          ^
475:info:build regex.c:4116:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
476:info:build           PUSH_FAILURE_POINT (0, 0, -2);
477:info:build           ^
478:info:build regex.c:2417:5: note: expanded from macro 'PUSH_FAILURE_POINT'
479:info:build     PUSH_FAILURE_ITEM (lowest_active_reg);                              \
480:info:build     ^
481:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
482:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
483:info:build                                          ^
484:info:build regex.c:4116:11: warning: cast to 'fail_stack_elt_t' (aka 'const unsigned char *') from smaller integer type 'unsigned int' [-Wint-to-pointer-cast]
485:info:build regex.c:2420:5: note: expanded from macro 'PUSH_FAILURE_POINT'
486:info:build     PUSH_FAILURE_ITEM (highest_active_reg);                             \
487:info:build     ^
488:info:build regex.c:2338:42: note: expanded from macro 'PUSH_FAILURE_ITEM'
489:info:build   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
490:info:build                                          ^
491:info:build 12 warnings generated.
492:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  tsprintf.c
493:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbiargs.c
494:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  tree.c
495:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  matrix.c
496:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_socket.c
497:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_buffer.c
498:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_types.c
499:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_core.c
500:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_core_c.c
501:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_util.c
502:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_priv.c
503:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_ansi_ext.c
504:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_connection.c
505:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_connector.c
506:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_connutil.c
507:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_file_connector.c
508:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_heapmgr.c
509:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_http_connector.c
510:info:build ncbi_http_connector.c:1056:48: warning: adding 'int' to a string does not append to the string [-Wstring-plus-int]
511:info:build             if (strncasecmp(s++, "\nReferer: " + first, 10 - first) == 0)
512:info:build                                  ~~~~~~~~~~~~~~^~~~~~~
513:info:build ncbi_http_connector.c:1056:48: note: use array indexing to silence this warning
514:info:build             if (strncasecmp(s++, "\nReferer: " + first, 10 - first) == 0)
515:info:build                                                ^
516:info:build                                  &             [      ]
517:info:build 1 warning generated.
518:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_memory_connector.c
519:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_lbsmd_stub.c
520:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_host_info.c
521:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_server_info.c
522:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_service.c
523:info:build ncbi_service.c:629:22: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
524:info:build                      SERV_CLIENT_REVISION_MAJOR, SERV_CLIENT_REVISION_MINOR);
525:info:build                      ^~~~~~~~~~~~~~~~~~~~~~~~~~
526:info:build ../include/connect/ncbi_service.h:41:37: note: expanded from macro 'SERV_CLIENT_REVISION_MAJOR'
527:info:build #define SERV_CLIENT_REVISION_MAJOR  6
528:info:build                                     ^
529:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
530:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
531:info:build                                                        ^~~~~~~~~~~
532:info:build ncbi_service.c:619:61: note: format string is defined here
533:info:build     static const char client_revision[] = "Client-Revision: %hu.%hu\r\n";
534:info:build                                                             ^~~
535:info:build                                                             %d
536:info:build ncbi_service.c:629:50: warning: format specifies type 'unsigned short' but the argument has type 'int' [-Wformat]
537:info:build                      SERV_CLIENT_REVISION_MAJOR, SERV_CLIENT_REVISION_MINOR);
538:info:build                                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~
539:info:build ../include/connect/ncbi_service.h:42:37: note: expanded from macro 'SERV_CLIENT_REVISION_MINOR'
540:info:build #define SERV_CLIENT_REVISION_MINOR  240
541:info:build                                     ^~~
542:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
543:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
544:info:build                                                        ^~~~~~~~~~~
545:info:build ncbi_service.c:619:65: note: format string is defined here
546:info:build     static const char client_revision[] = "Client-Revision: %hu.%hu\r\n";
547:info:build                                                                 ^~~
548:info:build                                                                 %d
549:info:build 2 warnings generated.
550:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_service_connector.c
551:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_ftp_connector.c
552:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_dispd.c
553:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_lb.c
554:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_local.c
555:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_socket_connector.c
556:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urlquery.c
557:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  binary.c
558:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_sendmail.c
559:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn_connection.c
560:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  raw_scoremat.c
561:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  drwnflpt.c
562:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  drwnfspc.c
563:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  drwnmfls.c
564:info:build rm -f libncbi.a
565:info:build ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o asn_connection.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
566:info:build cp -p libncbi.a ../lib
567:info:build ranlib ../lib/libncbi.a
568:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objacces.c
569:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objalign.c
570:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objall.c
571:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objbibli.c
572:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objfeat.c
573:info:build objfeat.c:3784:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
574:info:build            || onp2->mgcode != onp2->mgcode
575:info:build                            ^
576:info:build 1 warning generated.
577:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objgen.c
578:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objloc.c
579:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmedli.c
580:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objpub.c
581:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objres.c
582:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objscoremat.c
583:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objseq.c
584:info:build objseq.c:1454:11: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqDataPtr' (aka 'struct SeqData *') [-Wnon-literal-null-conversion]
585:info:build                         return FALSE;
586:info:build                                ^~~~~
587:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
588:info:build #define FALSE ((Nlm_Boolean)0)
589:info:build               ^~~~~~~~~~~~~~~~
590:info:build objseq.c:1458:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqDataPtr' (aka 'struct SeqData *') [-Wnon-literal-null-conversion]
591:info:build                 return FALSE;
592:info:build                        ^~~~~
593:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
594:info:build #define FALSE ((Nlm_Boolean)0)
595:info:build               ^~~~~~~~~~~~~~~~
596:info:build 2 warnings generated.
597:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objblock.c
598:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objcode.c
599:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objsset.c
600:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objsub.c
601:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objprt.c
602:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objfdef.c
603:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objalignloc.c
604:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objtable.c
605:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objpubme.c
606:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmdrs.c
607:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objproj.c
608:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objgbseq.c
609:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objtseq.c
610:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objinsdseq.c
611:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmacro.c
612:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objent2.c
613:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ent2api.c
614:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pmfapi.c
615:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objtax3.c
616:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  tax3api.c
617:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objegkludge.c
618:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objentgene.c
619:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmla2.c
620:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mla2api.c
621:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  qblastapi.c
622:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  vecscnapi.c
623:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmim.c
624:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mimapi.c
625:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  cddapi.c
626:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  seqport.c
627:info:build seqport.c:5420:31: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_ByteStorePtr' (aka 'struct bytestore *') [-Wnon-literal-null-conversion]
628:info:build         ByteStorePtr    bysp1, bysp2 = '\0';
629:info:build                                        ^~~~
630:info:build 1 warning generated.
631:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sequtil.c
632:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  prtutil.c
633:info:build prtutil.c:1270:36: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
634:info:build                 for (wrd = str, space = 0; (*wrd == ' '); wrd++)
635:info:build                                             ~~~~~^~~~~~
636:info:build prtutil.c:1270:36: note: remove extraneous parentheses around the comparison to silence this warning
637:info:build                 for (wrd = str, space = 0; (*wrd == ' '); wrd++)
638:info:build                                            ~     ^     ~
639:info:build prtutil.c:1270:36: note: use '=' to turn this equality comparison into an assignment
640:info:build                 for (wrd = str, space = 0; (*wrd == ' '); wrd++)
641:info:build                                                  ^~
642:info:build                                                  =
643:info:build 1 warning generated.
644:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  simple.c
645:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  tofasta.c
646:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  tofile.c
647:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  tomedlin.c
648:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  valid.c
649:info:build valid.c:21310:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
650:info:build   } else if (gip2->right < gip2->right) {
651:info:build                          ^
652:info:build 1 warning generated.
653:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  alignmgr.c
654:info:build alignmgr.c:1589:19: warning: cast to 'Nlm_VoidPtr' (aka 'void *') from smaller integer type 'Nlm_Boolean' (aka 'unsigned char') [-Wint-to-void-pointer-cast]
655:info:build       sap->saip = (Pointer)AMAlignIndexFree(amaip);
656:info:build                   ^
657:info:build alignmgr.c:2270:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion]
658:info:build       return FALSE;
659:info:build              ^~~~~
660:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
661:info:build #define FALSE ((Nlm_Boolean)0)
662:info:build               ^~~~~~~~~~~~~~~~
663:info:build alignmgr.c:2273:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion]
664:info:build       return FALSE;
665:info:build              ^~~~~
666:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
667:info:build #define FALSE ((Nlm_Boolean)0)
668:info:build               ^~~~~~~~~~~~~~~~
669:info:build alignmgr.c:2276:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqAlignPtr' (aka 'struct seqalign *') [-Wnon-literal-null-conversion]
670:info:build       return FALSE;
671:info:build              ^~~~~
672:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
673:info:build #define FALSE ((Nlm_Boolean)0)
674:info:build               ^~~~~~~~~~~~~~~~
675:info:build alignmgr.c:6292:17: warning: expression which evaluates to zero treated as a null pointer constant of type 'AMmsmsPtr' (aka 'struct am_msms *') [-Wnon-literal-null-conversion]
676:info:build          return FALSE;
677:info:build                 ^~~~~
678:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
679:info:build #define FALSE ((Nlm_Boolean)0)
680:info:build               ^~~~~~~~~~~~~~~~
681:info:build 5 warnings generated.
682:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  aliparse.c
683:info:build aliparse.c:2092:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
684:info:build static s_IsExistingId (AlignFileDataPtr fileInfoPtr,
685:info:build ~~~~~~ ^
686:info:build aliparse.c:2533:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'AlignFileDataPtr' (aka 'AlignFileData *') [-Wnon-literal-null-conversion]
687:info:build     return FALSE;
688:info:build            ^~~~~
689:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
690:info:build #define FALSE ((Nlm_Boolean)0)
691:info:build               ^~~~~~~~~~~~~~~~
692:info:build aliparse.c:3161:15: warning: expression result unused [-Wunused-value]
693:info:build          for (d; d<spacer; d++)
694:info:build               ^
695:info:build 3 warnings generated.
696:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  aliread.c
697:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  alignval.c
698:info:build alignval.c:1197:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
699:info:build             else
700:info:build             ^
701:info:build 1 warning generated.
702:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sqnutil1.c
703:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sqnutil2.c
704:info:build sqnutil2.c:1436:30: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
705:info:build            offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
706:info:build                              ^
707:info:build sqnutil2.c:1436:30: note: use function 'labs' instead
708:info:build            offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
709:info:build                              ^~~
710:info:build                              labs
711:info:build sqnutil2.c:1436:47: warning: absolute value function 'abs' given an argument of type 'long' but has parameter of type 'int' which may cause truncation of value [-Wabsolute-value]
712:info:build            offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
713:info:build                                               ^
714:info:build sqnutil2.c:1436:47: note: use function 'labs' instead
715:info:build            offset =(Int4)abs(abs((long)strdb)-abs((long)strtmp));
716:info:build                                               ^~~
717:info:build                                               labs
718:info:build sqnutil2.c:3312:44: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
719:info:build   if (str == NULL || seqid == NULL) return FALSE;
720:info:build                                            ^~~~~
721:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
722:info:build #define FALSE ((Nlm_Boolean)0)
723:info:build               ^~~~~~~~~~~~~~~~
724:info:build sqnutil2.c:4432:48: warning: implicit conversion from 'int' to 'Nlm_Char' (aka 'char') changes value from 255 to -1 [-Wconstant-conversion]
725:info:build   if (res_name == NULL || sctp == NULL) return INVALID_RESIDUE;
726:info:build                                         ~~~~~~ ^~~~~~~~~~~~~~~
727:info:build ../include/sequtil.h:372:25: note: expanded from macro 'INVALID_RESIDUE'
728:info:build #define INVALID_RESIDUE 255
729:info:build                         ^~~
730:info:build sqnutil2.c:9351:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
731:info:build   } else if (gip2->right < gip2->right) {
732:info:build                          ^
733:info:build 5 warnings generated.
734:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sqnutil3.c
735:info:build sqnutil3.c:6232:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
736:info:build extern CharPtr discReportInconsistentLocusTagPrefixFmt = "%d features have locus tag prefix %s.";
737:info:build                ^
738:info:build sqnutil3.c:6233:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
739:info:build extern CharPtr discReportInconsistentProteinIDPrefixFmt = "%d sequences have protein ID prefix %s.";
740:info:build                ^
741:info:build sqnutil3.c:6234:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
742:info:build extern CharPtr discReportBadProteinIdFmt = "%d proteins have invalid IDs.";
743:info:build                ^
744:info:build sqnutil3.c:6517:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
745:info:build extern CharPtr discReportDuplicateLocusTagFmt = "%d genes have duplicate locus tags.";
746:info:build                ^
747:info:build sqnutil3.c:6518:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
748:info:build extern CharPtr discReportOneDuplicateLocusTagFmt = "%d genes have locus tag %s.";
749:info:build                ^
750:info:build sqnutil3.c:6519:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
751:info:build extern CharPtr discReportMissingLocusTags = "%d genes have no locus tags.";
752:info:build                ^
753:info:build sqnutil3.c:9657:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
754:info:build extern CharPtr discReportDuplicateProteinIDFmt = "%d coding regions have non-unique protein IDs";
755:info:build                ^
756:info:build sqnutil3.c:9658:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
757:info:build extern CharPtr discReportOneDuplicateProteinIDFmt = "%d coding regions have protein ID %s";
758:info:build                ^
759:info:build sqnutil3.c:9659:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
760:info:build extern CharPtr discReportMissingProteinIDFmt = "%d coding regions have missing protein IDs";
761:info:build                ^
762:info:build sqnutil3.c:9660:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
763:info:build extern CharPtr discReportDuplicateTranscriptIdFmt = "%d mRNAs have non-unique transcript IDs";
764:info:build                ^
765:info:build sqnutil3.c:9661:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
766:info:build extern CharPtr discReportOneDuplicateTranscriptIdFmt = "%d mRNAs have non-unique transcript ID %s";
767:info:build                ^
768:info:build sqnutil3.c:9662:16: warning: 'extern' variable has an initializer [-Wextern-initializer]
769:info:build extern CharPtr discReportMissingTranscriptIDFmt = "%d mRNAs have missing transcript IDs";
770:info:build                ^
771:info:build sqnutil3.c:10461:20: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
772:info:build       fprintf (fp, row_text);
773:info:build                    ^~~~~~~~
774:info:build sqnutil3.c:10461:20: note: treat the string as an argument to avoid this
775:info:build       fprintf (fp, row_text);
776:info:build                    ^
777:info:build                    "%s",
778:info:build 13 warnings generated.
779:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sqnutil4.c
780:info:build sqnutil4.c:5664:29: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
781:info:build       sprintf (description, gene_name);
782:info:build                             ^~~~~~~~~
783:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
784:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
785:info:build                                                        ^~~~~~~~~~~
786:info:build sqnutil4.c:5664:29: note: treat the string as an argument to avoid this
787:info:build       sprintf (description, gene_name);
788:info:build                             ^
789:info:build                             "%s",
790:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
791:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
792:info:build                                                        ^
793:info:build sqnutil4.c:6394:53: warning: expression which evaluates to zero treated as a null pointer constant of type 'DeflineFeatureRequestListPtr' (aka 'struct deflinefeaturerequestlist *') [-Wnon-literal-null-conversion]
794:info:build   expected_product_name = GetProductName (cds, bsp, FALSE);
795:info:build                                                     ^~~~~
796:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
797:info:build #define FALSE ((Nlm_Boolean)0)
798:info:build               ^~~~~~~~~~~~~~~~
799:info:build sqnutil4.c:9619:37: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
800:info:build         if (new_fcp == NULL) return FALSE;
801:info:build                                     ^~~~~
802:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
803:info:build #define FALSE ((Nlm_Boolean)0)
804:info:build               ^~~~~~~~~~~~~~~~
805:info:build sqnutil4.c:9621:33: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
806:info:build         if (vnp == NULL) return FALSE;
807:info:build                                 ^~~~~
808:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
809:info:build #define FALSE ((Nlm_Boolean)0)
810:info:build               ^~~~~~~~~~~~~~~~
811:info:build 4 warnings generated.
812:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  subutil.c
813:info:build subutil.c:772:38: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
814:info:build         if (delta_seq_entry == NULL) return FALSE;
815:info:build                                             ^~~~~
816:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
817:info:build #define FALSE ((Nlm_Boolean)0)
818:info:build               ^~~~~~~~~~~~~~~~
819:info:build subutil.c:773:45: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
820:info:build         if (IS_Bioseq_set(delta_seq_entry)) return FALSE;
821:info:build                                                    ^~~~~
822:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
823:info:build #define FALSE ((Nlm_Boolean)0)
824:info:build               ^~~~~~~~~~~~~~~~
825:info:build subutil.c:774:53: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
826:info:build         if (delta_seq_entry->data.ptrvalue == NULL) return FALSE;
827:info:build                                                            ^~~~~
828:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
829:info:build #define FALSE ((Nlm_Boolean)0)
830:info:build               ^~~~~~~~~~~~~~~~
831:info:build subutil.c:780:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqLitPtr' (aka 'struct seqlit *') [-Wnon-literal-null-conversion]
832:info:build                 return FALSE;
833:info:build                        ^~~~~
834:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
835:info:build #define FALSE ((Nlm_Boolean)0)
836:info:build               ^~~~~~~~~~~~~~~~
837:info:build subutil.c:3636:23: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
838:info:build                         if (AA_for_tRNA != '\0')
839:info:build                                            ^~~~
840:info:build                                            (void *)0
841:info:build subutil.c:4047:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqGraphPtr' (aka 'struct seqgraph *') [-Wnon-literal-null-conversion]
842:info:build                 return FALSE;
843:info:build                        ^~~~~
844:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
845:info:build #define FALSE ((Nlm_Boolean)0)
846:info:build               ^~~~~~~~~~~~~~~~
847:info:build 6 warnings generated.
848:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  edutil.c
849:info:build edutil.c:1958:45: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
850:info:build         if ((oldbsp == NULL) || (from < 0)) return FALSE;
851:info:build                                                    ^~~~~
852:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
853:info:build #define FALSE ((Nlm_Boolean)0)
854:info:build               ^~~~~~~~~~~~~~~~
855:info:build edutil.c:2099:47: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
856:info:build         if ((sourceid == NULL) || (from < 0)) return FALSE;
857:info:build                                                      ^~~~~
858:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
859:info:build #define FALSE ((Nlm_Boolean)0)
860:info:build               ^~~~~~~~~~~~~~~~
861:info:build edutil.c:6557:1: warning: '/*' within block comment [-Wcomment]
862:info:build /* This section of code deals with editing the sequence by inserting and removing characters.
863:info:build ^
864:info:build 3 warnings generated.
865:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2ff1.c
866:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2ff2.c
867:info:build asn2ff2.c:1350:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
868:info:build static ChoicePID(SeqIdPtr sid)
869:info:build ~~~~~~ ^
870:info:build 1 warning generated.
871:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2ff3.c
872:info:build asn2ff3.c:3728:24: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
873:info:build                         sprintf(buf, "%ld", sip->data.intvalue);
874:info:build                                       ~~~   ^~~~~~~~~~~~~~~~~~
875:info:build                                       %d
876:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
877:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
878:info:build                                                        ^~~~~~~~~~~
879:info:build asn2ff3.c:3771:25: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
880:info:build                                 sprintf(buf, "%ld", sip->data.intvalue);
881:info:build                                               ~~~   ^~~~~~~~~~~~~~~~~~
882:info:build                                               %d
883:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
884:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
885:info:build                                                        ^~~~~~~~~~~
886:info:build 2 warnings generated.
887:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2ff4.c
888:info:build asn2ff4.c:1126:5: warning: add explicit braces to avoid dangling else [-Wdangling-else]
889:info:build                         }else{
890:info:build                          ^
891:info:build asn2ff4.c:1347:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
892:info:build static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
893:info:build ~~~~~~ ^
894:info:build asn2ff4.c:2069:26: warning: comparison of array 'gbp->accession' equal to a null pointer is always false [-Wtautological-pointer-compare]
895:info:build         if (gbp == NULL || gbp->accession == NULL)
896:info:build                            ~~~~~^~~~~~~~~    ~~~~
897:info:build asn2ff4.c:2660:12: warning: address of array 'gbp->locus' will always evaluate to 'true' [-Wpointer-bool-conversion]
898:info:build                 if (gbp->locus) {
899:info:build                 ~~  ~~~~~^~~~~
900:info:build asn2ff4.c:2664:12: warning: address of array 'gbp->accession' will always evaluate to 'true' [-Wpointer-bool-conversion]
901:info:build                 if (gbp->accession) {
902:info:build                 ~~  ~~~~~^~~~~~~~~
903:info:build 5 warnings generated.
904:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2ff5.c
905:info:build asn2ff5.c:1683:5: warning: add explicit braces to avoid dangling else [-Wdangling-else]
906:info:build                                 else
907:info:build                                 ^
908:info:build asn2ff5.c:2124:12: warning: expression result unused [-Wunused-value]
909:info:build                         temp++; *ptr_in++;
910:info:build                                 ^~~~~~~~~
911:info:build asn2ff5.c:2128:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
912:info:build                 temp = '\0';
913:info:build                        ^~~~
914:info:build 3 warnings generated.
915:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2ff6.c
916:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2gnb1.c
917:info:build asn2gnb1.c:4215:22: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
918:info:build         fprintf (fp, ffhead);
919:info:build                      ^~~~~~
920:info:build asn2gnb1.c:4215:22: note: treat the string as an argument to avoid this
921:info:build         fprintf (fp, ffhead);
922:info:build                      ^
923:info:build                      "%s",
924:info:build asn2gnb1.c:4266:22: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
925:info:build         fprintf (fp, fftail);
926:info:build                      ^~~~~~
927:info:build asn2gnb1.c:4266:22: note: treat the string as an argument to avoid this
928:info:build         fprintf (fp, fftail);
929:info:build                      ^
930:info:build                      "%s",
931:info:build 2 warnings generated.
932:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2gnb2.c
933:info:build asn2gnb2.c:1574:18: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
934:info:build   while (accp != '\0'  &&  prevp != '\0') {
935:info:build                  ^~~~
936:info:build                  (void *)0
937:info:build asn2gnb2.c:1574:37: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
938:info:build   while (accp != '\0'  &&  prevp != '\0') {
939:info:build                                     ^~~~
940:info:build                                     (void *)0
941:info:build asn2gnb2.c:1599:41: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
942:info:build     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
943:info:build                                         ^~~~
944:info:build                                         (void *)0
945:info:build 3 warnings generated.
946:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2gnb3.c
947:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2gnb4.c
948:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2gnb5.c
949:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  asn2gnb6.c
950:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ftusrstr.c
951:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gbfeat.c
952:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gbftglob.c
953:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gbparint.c
954:info:build gbparint.c:2064:52: warning: for loop has empty body [-Wempty-body]
955:info:build                                         for (; IS_DIGIT(*current_col); current_col++) ;
956:info:build                                                                                       ^
957:info:build gbparint.c:2064:52: note: put the semicolon on a separate line to silence this warning
958:info:build gbparint.c:2129:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
959:info:build                                         }else{
960:info:build                                          ^
961:info:build gbparint.c:2450:52: warning: for loop has empty body [-Wempty-body]
962:info:build                                         for (; IS_DIGIT(*current_col); current_col++) ;
963:info:build                                                                                       ^
964:info:build gbparint.c:2450:52: note: put the semicolon on a separate line to silence this warning
965:info:build gbparint.c:2515:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
966:info:build                                         }else{
967:info:build                                          ^
968:info:build 4 warnings generated.
969:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  utilpars.c
970:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  utilpub.c
971:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ffprint.c
972:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  wprint.c
973:info:build wprint.c:781:17: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
974:info:build                                                         link_ff, (Int4) gi, itemID, entityID);
975:info:build                                                         ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
976:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
977:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
978:info:build                                                        ^~~~~~~~~~~
979:info:build wprint.c:825:24: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
980:info:build                                                                                                 link_muid, (Int4) muid);
981:info:build                                                                                                 ~~~~~~~~~~~^~~~~~~~~~~~
982:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
983:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
984:info:build                                                        ^~~~~~~~~~~
985:info:build 2 warnings generated.
986:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  satutil.c
987:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  seqmgr.c
988:info:build seqmgr.c:374:29: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqEntryPtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
989:info:build     if (smp == NULL) return FALSE;
990:info:build                             ^~~~~
991:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
992:info:build #define FALSE ((Nlm_Boolean)0)
993:info:build               ^~~~~~~~~~~~~~~~
994:info:build seqmgr.c:3692:28: warning: expression which evaluates to zero treated as a null pointer constant of type 'SeqEntryPtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
995:info:build   if (omdp == NULL) return FALSE;
996:info:build                            ^~~~~
997:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
998:info:build #define FALSE ((Nlm_Boolean)0)
999:info:build               ^~~~~~~~~~~~~~~~
1000:info:build seqmgr.c:5394:88: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1001:info:build           slp = SeqLocCopyRegion (sip, loc, bsp, 0, bsp->length - 1, Seq_strand_minus, FALSE);
1002:info:build                                                                                        ^~~~~
1003:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1004:info:build #define FALSE ((Nlm_Boolean)0)
1005:info:build               ^~~~~~~~~~~~~~~~
1006:info:build 3 warnings generated.
1007:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmgr.c
1008:info:build objmgr.c:1195:16: warning: result of comparison of constant 4294967295 with expression of type 'Nlm_Uint2' (aka 'unsigned short') is always true [-Wtautological-constant-out-of-range-compare]
1009:info:build         if (omp->hold < OBJMGR_MAX)
1010:info:build             ~~~~~~~~~ ^ ~~~~~~~~~~
1011:info:build objmgr.c:3184:4: warning: format specifies type 'unsigned int' but the argument has type 'unsigned long' [-Wformat]
1012:info:build                         (unsigned long)(omdp->touch));
1013:info:build                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
1014:info:build 2 warnings generated.
1015:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gather.c
1016:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  accmmdbs.c
1017:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  acccn3ds.c
1018:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  lsqfetch.c
1019:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  findrepl.c
1020:info:build findrepl.c:1836:16: warning: taking the absolute value of unsigned type 'unsigned long' has no effect [-Wabsolute-value]
1021:info:build     new_len += abs (StringLen (GetSpecialCharacterReplacement ((unsigned char)*cp)) - 1);
1022:info:build                ^
1023:info:build findrepl.c:1836:16: note: remove the call to 'abs' since unsigned values cannot be negative
1024:info:build     new_len += abs (StringLen (GetSpecialCharacterReplacement ((unsigned char)*cp)) - 1);
1025:info:build                ^~~~
1026:info:build 1 warning generated.
1027:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  codon.c
1028:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  jzcoll.c
1029:info:build jzcoll.c:1748:11: warning: comparison of array 'csop->features' equal to a null pointer is always false [-Wtautological-pointer-compare]
1030:info:build         if(csop->features == NULL && afp->all_feature == FALSE)
1031:info:build            ~~~~~~^~~~~~~~    ~~~~
1032:info:build 1 warning generated.
1033:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  jzmisc.c
1034:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  maputil.c
1035:info:build maputil.c:868:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1036:info:build                 return FALSE;
1037:info:build                        ^~~~~
1038:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1039:info:build #define FALSE ((Nlm_Boolean)0)
1040:info:build               ^~~~~~~~~~~~~~~~
1041:info:build 1 warning generated.
1042:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mconsist.c
1043:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  macroapi.c
1044:info:build macroapi.c:2159:51: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
1045:info:build   if (str == NULL || text_portion == NULL) return FALSE;
1046:info:build                                                   ^~~~~
1047:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1048:info:build #define FALSE ((Nlm_Boolean)0)
1049:info:build               ^~~~~~~~~~~~~~~~
1050:info:build macroapi.c:5362:77: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_CharPtr' (aka 'char *') [-Wnon-literal-null-conversion]
1051:info:build   if (data == NULL || field == NULL || field->data.ptrvalue == NULL) return FALSE;
1052:info:build                                                                             ^~~~~
1053:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1054:info:build #define FALSE ((Nlm_Boolean)0)
1055:info:build               ^~~~~~~~~~~~~~~~
1056:info:build macroapi.c:8158:25: warning: format specifies type 'char *' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
1057:info:build     sprintf (buf, "%s", dbtag->tag->id);
1058:info:build                    ~~   ^~~~~~~~~~~~~~
1059:info:build                    %d
1060:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1061:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1062:info:build                                                        ^~~~~~~~~~~
1063:info:build macroapi.c:9704:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1064:info:build     return FALSE;
1065:info:build            ^~~~~
1066:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1067:info:build #define FALSE ((Nlm_Boolean)0)
1068:info:build               ^~~~~~~~~~~~~~~~
1069:info:build macroapi.c:9710:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1070:info:build     return FALSE;
1071:info:build            ^~~~~
1072:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1073:info:build #define FALSE ((Nlm_Boolean)0)
1074:info:build               ^~~~~~~~~~~~~~~~
1075:info:build macroapi.c:10871:38: warning: self-comparison always evaluates to false [-Wtautological-compare]
1076:info:build       } else if (vnp2->data.ptrvalue < vnp2->data.ptrvalue) {
1077:info:build                                      ^
1078:info:build 6 warnings generated.
1079:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salpedit.c
1080:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salpstat.c
1081:info:build salpstat.c:1945:17: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1082:info:build   if((bsp1->mol == Seq_mol_aa))
1083:info:build       ~~~~~~~~~~^~~~~~~~~~~~~
1084:info:build salpstat.c:1945:17: note: remove extraneous parentheses around the comparison to silence this warning
1085:info:build   if((bsp1->mol == Seq_mol_aa))
1086:info:build      ~          ^            ~
1087:info:build salpstat.c:1945:17: note: use '=' to turn this equality comparison into an assignment
1088:info:build   if((bsp1->mol == Seq_mol_aa))
1089:info:build                 ^~
1090:info:build                 =
1091:info:build salpstat.c:1949:17: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
1092:info:build   if((bsp2->mol == Seq_mol_aa))
1093:info:build       ~~~~~~~~~~^~~~~~~~~~~~~
1094:info:build salpstat.c:1949:17: note: remove extraneous parentheses around the comparison to silence this warning
1095:info:build   if((bsp2->mol == Seq_mol_aa))
1096:info:build      ~          ^            ~
1097:info:build salpstat.c:1949:17: note: use '=' to turn this equality comparison into an assignment
1098:info:build   if((bsp2->mol == Seq_mol_aa))
1099:info:build                 ^~
1100:info:build                 =
1101:info:build 2 warnings generated.
1102:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salpacc.c
1103:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salprop.c
1104:info:build salprop.c:867:52: warning: address of array 'sesp->label' will always evaluate to 'true' [-Wpointer-bool-conversion]
1105:info:build                     if (af.protName==NULL && sesp->label)
1106:info:build                                           ~~ ~~~~~~^~~~~
1107:info:build 1 warning generated.
1108:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salsap.c
1109:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salstruc.c
1110:info:build salstruc.c:1080:21: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
1111:info:build      if (strptmp == '\0') break;
1112:info:build                     ^~~~
1113:info:build                     (void *)0
1114:info:build salstruc.c:1854:21: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1115:info:build      fprintf (fout, label);       
1116:info:build                     ^~~~~
1117:info:build salstruc.c:1854:21: note: treat the string as an argument to avoid this
1118:info:build      fprintf (fout, label);       
1119:info:build                     ^
1120:info:build                     "%s",
1121:info:build salstruc.c:2319:12: warning: comparison of array 'csop->features' equal to a null pointer is always false [-Wtautological-pointer-compare]
1122:info:build   if(csop->features == NULL)
1123:info:build      ~~~~~~^~~~~~~~    ~~~~
1124:info:build salstruc.c:2422:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1125:info:build       return FALSE;
1126:info:build              ^~~~~
1127:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1128:info:build #define FALSE ((Nlm_Boolean)0)
1129:info:build               ^~~~~~~~~~~~~~~~
1130:info:build salstruc.c:2424:14: warning: expression which evaluates to zero treated as a null pointer constant of type 'ValNodePtr' (aka 'struct valnode *') [-Wnon-literal-null-conversion]
1131:info:build       return FALSE;
1132:info:build              ^~~~~
1133:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1134:info:build #define FALSE ((Nlm_Boolean)0)
1135:info:build               ^~~~~~~~~~~~~~~~
1136:info:build 5 warnings generated.
1137:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salutil.c
1138:info:build salutil.c:2398:12: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1139:info:build            else if (!with_prot && feat->data == NULL)
1140:info:build            ^
1141:info:build 1 warning generated.
1142:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  udvseq.c
1143:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blocks.c
1144:info:build blocks.c:1375:32: warning: expression which evaluates to zero treated as a null pointer constant of type 'SegmentPtr' (aka 'struct _segment *') [-Wnon-literal-null-conversion]
1145:info:build    minus_head1 = minus_head2 = FALSE;
1146:info:build                                ^~~~~
1147:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1148:info:build #define FALSE ((Nlm_Boolean)0)
1149:info:build               ^~~~~~~~~~~~~~~~
1150:info:build 1 warning generated.
1151:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pgppop.c
1152:info:build pgppop.c:2997:16: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1153:info:build                                 fprintf(fp,szSeq);
1154:info:build                                            ^~~~~
1155:info:build pgppop.c:2997:16: note: treat the string as an argument to avoid this
1156:info:build                                 fprintf(fp,szSeq);
1157:info:build                                            ^
1158:info:build                                            "%s",
1159:info:build 1 warning generated.
1160:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  samutil.c
1161:info:build samutil.c:1794:13: warning: multiple unsequenced modifications to 'Index' [-Wunsequenced]
1162:info:build     Index = ++Index % DDE_STACK_SIZE;
1163:info:build           ~ ^
1164:info:build 1 warning generated.
1165:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ddvcolor.c
1166:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  viewmgr.c
1167:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ddvcreate.c
1168:info:build ddvcreate.c:493:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1169:info:build          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1170:info:build                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1171:info:build ddvcreate.c:493:22: note: place parentheses around the assignment to silence this warning
1172:info:build          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1173:info:build                      ^
1174:info:build                 (                                          )
1175:info:build ddvcreate.c:493:22: note: use '==' to turn this assignment into an equality comparison
1176:info:build          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1177:info:build                      ^
1178:info:build                      ==
1179:info:build ddvcreate.c:779:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1180:info:build          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1181:info:build                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1182:info:build ddvcreate.c:779:22: note: place parentheses around the assignment to silence this warning
1183:info:build          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1184:info:build                      ^
1185:info:build                 (                                          )
1186:info:build ddvcreate.c:779:22: note: use '==' to turn this assignment into an equality comparison
1187:info:build          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
1188:info:build                      ^
1189:info:build                      ==
1190:info:build 2 warnings generated.
1191:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  jsavlt.c
1192:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  needleman.c
1193:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  txalign.c
1194:info:build txalign.c:1769:179: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
1195:info:build                                           sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%ld\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%ld', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
1196:info:build                                                                                                                    ~~~                                                                                               ^~~~~~~~~~~~~~~~~~
1197:info:build                                                                                                                    %d
1198:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1199:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1200:info:build                                                        ^~~~~~~~~~~
1201:info:build txalign.c:1769:199: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
1202:info:build                                           sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%ld\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%ld', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
1203:info:build                                                                                                                                                                                 ~~~                                                      ^~~~~~~~~~~~~~~~
1204:info:build                                                                                                                                                                                 %d
1205:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1206:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1207:info:build                                                        ^~~~~~~~~~~
1208:info:build txalign.c:1770:27: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1209:info:build                                           sprintf(docbuf+pos,checkboxBuf);
1210:info:build                                                              ^~~~~~~~~~~
1211:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1212:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1213:info:build                                                        ^~~~~~~~~~~
1214:info:build txalign.c:1770:27: note: treat the string as an argument to avoid this
1215:info:build                                           sprintf(docbuf+pos,checkboxBuf);
1216:info:build                                                              ^
1217:info:build                                                              "%s",
1218:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1219:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1220:info:build                                                        ^
1221:info:build txalign.c:1776:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1222:info:build                                         sprintf(docbuf+pos, HTML_buffer);
1223:info:build                                                             ^~~~~~~~~~~
1224:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1225:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1226:info:build                                                        ^~~~~~~~~~~
1227:info:build txalign.c:1776:26: note: treat the string as an argument to avoid this
1228:info:build                                         sprintf(docbuf+pos, HTML_buffer);
1229:info:build                                                             ^
1230:info:build                                                             "%s",
1231:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1232:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1233:info:build                                                        ^
1234:info:build txalign.c:1793:65: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1235:info:build                                             sprintf(docbuf+pos, HTML_buffer);
1236:info:build                                                                 ^~~~~~~~~~~
1237:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1238:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1239:info:build                                                        ^~~~~~~~~~~
1240:info:build txalign.c:1793:65: note: treat the string as an argument to avoid this
1241:info:build                                             sprintf(docbuf+pos, HTML_buffer);
1242:info:build                                                                 ^
1243:info:build                                                                 "%s",
1244:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1245:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1246:info:build                                                        ^
1247:info:build txalign.c:1802:65: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1248:info:build                                             sprintf(docbuf+pos, HTML_buffer);
1249:info:build                                                                 ^~~~~~~~~~~
1250:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1251:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1252:info:build                                                        ^~~~~~~~~~~
1253:info:build txalign.c:1802:65: note: treat the string as an argument to avoid this
1254:info:build                                             sprintf(docbuf+pos, HTML_buffer);
1255:info:build                                                                 ^
1256:info:build                                                                 "%s",
1257:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1258:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1259:info:build                                                        ^
1260:info:build txalign.c:1818:152: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
1261:info:build                     sprintf(checkboxBuf, "<input type=\"checkbox\" name=\"getSeqMaster\" value=\"\" onClick=\"uncheckable('getSeqAlignment%ld', 'getSeqMaster')\">", query_number_glb);
1262:info:build                                                                                                                                           ~~~                        ^~~~~~~~~~~~~~~~
1263:info:build                                                                                                                                           %d
1264:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1265:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1266:info:build                                                        ^~~~~~~~~~~
1267:info:build txalign.c:1819:26: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1268:info:build                     sprintf(docbuf+pos,checkboxBuf);
1269:info:build                                        ^~~~~~~~~~~
1270:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1271:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1272:info:build                                                        ^~~~~~~~~~~
1273:info:build txalign.c:1819:26: note: treat the string as an argument to avoid this
1274:info:build                     sprintf(docbuf+pos,checkboxBuf);
1275:info:build                                        ^
1276:info:build                                        "%s",
1277:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1278:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1279:info:build                                                        ^
1280:info:build txalign.c:2743:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1281:info:build             if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
1282:info:build                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1283:info:build txalign.c:2743:21: note: place parentheses around the assignment to silence this warning
1284:info:build             if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
1285:info:build                     ^
1286:info:build                 (                                             )
1287:info:build txalign.c:2743:21: note: use '==' to turn this assignment into an equality comparison
1288:info:build             if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
1289:info:build                     ^
1290:info:build                     ==
1291:info:build txalign.c:5011:37: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1292:info:build                             if (bsp = BioseqLockById(bestid)) {
1293:info:build                                 ~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1294:info:build txalign.c:5011:37: note: place parentheses around the assignment to silence this warning
1295:info:build                             if (bsp = BioseqLockById(bestid)) {
1296:info:build                                     ^
1297:info:build                                 (                           )
1298:info:build txalign.c:5011:37: note: use '==' to turn this assignment into an equality comparison
1299:info:build                             if (bsp = BioseqLockById(bestid)) {
1300:info:build                                     ^
1301:info:build                                     ==
1302:info:build 10 warnings generated.
1303:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  fdlobj.c
1304:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  alignmgr2.c
1305:info:build alignmgr2.c:872:18: warning: expression result unused [-Wunused-value]
1306:info:build             for (j; j<dsp->numseg && next == -1; j++)
1307:info:build                  ^
1308:info:build alignmgr2.c:2964:18: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1309:info:build       if (ldelta = ABS(s->beg - beg)) {
1310:info:build           ~~~~~~~^~~~~~~~~~~~~~~~~~~
1311:info:build alignmgr2.c:2964:18: note: place parentheses around the assignment to silence this warning
1312:info:build       if (ldelta = ABS(s->beg - beg)) {
1313:info:build                  ^
1314:info:build           (                         )
1315:info:build alignmgr2.c:2964:18: note: use '==' to turn this assignment into an equality comparison
1316:info:build       if (ldelta = ABS(s->beg - beg)) {
1317:info:build                  ^
1318:info:build                  ==
1319:info:build alignmgr2.c:3201:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1320:info:build   while (a = AlnMgr2GetNextSeqPiece(a)) {
1321:info:build          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1322:info:build alignmgr2.c:3201:12: note: place parentheses around the assignment to silence this warning
1323:info:build   while (a = AlnMgr2GetNextSeqPiece(a)) {
1324:info:build            ^
1325:info:build          (                            )
1326:info:build alignmgr2.c:3201:12: note: use '==' to turn this assignment into an equality comparison
1327:info:build   while (a = AlnMgr2GetNextSeqPiece(a)) {
1328:info:build            ^
1329:info:build            ==
1330:info:build alignmgr2.c:3203:14: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1331:info:build     while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
1332:info:build            ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1333:info:build alignmgr2.c:3203:14: note: place parentheses around the assignment to silence this warning
1334:info:build     while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
1335:info:build              ^
1336:info:build            (                                      )
1337:info:build alignmgr2.c:3203:14: note: use '==' to turn this assignment into an equality comparison
1338:info:build     while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
1339:info:build              ^
1340:info:build              ==
1341:info:build alignmgr2.c:3213:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1342:info:build   while (A = AlnMgr2GetNextSeqPiece(A)) {
1343:info:build          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
1344:info:build alignmgr2.c:3213:12: note: place parentheses around the assignment to silence this warning
1345:info:build   while (A = AlnMgr2GetNextSeqPiece(A)) {
1346:info:build            ^
1347:info:build          (                            )
1348:info:build alignmgr2.c:3213:12: note: use '==' to turn this assignment into an equality comparison
1349:info:build   while (A = AlnMgr2GetNextSeqPiece(A)) {
1350:info:build            ^
1351:info:build            ==
1352:info:build alignmgr2.c:3217:16: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1353:info:build       while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
1354:info:build              ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1355:info:build alignmgr2.c:3217:16: note: place parentheses around the assignment to silence this warning
1356:info:build       while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
1357:info:build                ^
1358:info:build              (                                      )
1359:info:build alignmgr2.c:3217:16: note: use '==' to turn this assignment into an equality comparison
1360:info:build       while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
1361:info:build                ^
1362:info:build                ==
1363:info:build alignmgr2.c:5603:22: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1364:info:build          while (more = AlnMgr2GetNextAlnBit(sap, amp))
1365:info:build                 ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1366:info:build alignmgr2.c:5603:22: note: place parentheses around the assignment to silence this warning
1367:info:build          while (more = AlnMgr2GetNextAlnBit(sap, amp))
1368:info:build                      ^
1369:info:build                 (                                    )
1370:info:build alignmgr2.c:5603:22: note: use '==' to turn this assignment into an equality comparison
1371:info:build          while (more = AlnMgr2GetNextAlnBit(sap, amp))
1372:info:build                      ^
1373:info:build                      ==
1374:info:build alignmgr2.c:5616:29: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1375:info:build                fprintf(ofp, buf);
1376:info:build                             ^~~
1377:info:build alignmgr2.c:5616:29: note: treat the string as an argument to avoid this
1378:info:build                fprintf(ofp, buf);
1379:info:build                             ^
1380:info:build                             "%s",
1381:info:build alignmgr2.c:6154:17: warning: expression which evaluates to zero treated as a null pointer constant of type 'AMInterrInfoPtr' (aka 'struct am_interrinfo *') [-Wnon-literal-null-conversion]
1382:info:build          return FALSE;
1383:info:build                 ^~~~~
1384:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1385:info:build #define FALSE ((Nlm_Boolean)0)
1386:info:build               ^~~~~~~~~~~~~~~~
1387:info:build alignmgr2.c:6311:12: warning: expression result unused [-Wunused-value]
1388:info:build       for (i; i<interrupt->segnum; i++)
1389:info:build            ^
1390:info:build 10 warnings generated.
1391:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  alnread.c
1392:info:build alnread.c:717:36: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
1393:info:build             sprintf (eip->message, msg);
1394:info:build                                    ^~~
1395:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1396:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1397:info:build                                                        ^~~~~~~~~~~
1398:info:build alnread.c:717:36: note: treat the string as an argument to avoid this
1399:info:build             sprintf (eip->message, msg);
1400:info:build                                    ^
1401:info:build                                    "%s",
1402:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1403:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1404:info:build                                                        ^
1405:info:build 1 warning generated.
1406:info:build rm -f libncbiobj.a
1407:info:build ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o
1408:info:build cp -p libncbiobj.a ../lib
1409:info:build ranlib ../lib/libncbiobj.a
1410:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  cdentrez.c
1411:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  cdromlib.c
1412:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  cdnewlib.c
1413:info:build cdnewlib.c:1342:12: warning: cast to 'AsnIo *' (aka 'struct asnio *') from smaller integer type 'int' [-Wint-to-pointer-cast]
1414:info:build                                 return (AsnIo*) CatastrophicFailure(1);
1415:info:build                                        ^
1416:info:build cdnewlib.c:1937:10: warning: cast to 'long *' from smaller integer type 'int' [-Wint-to-pointer-cast]
1417:info:build                 return (long*)CatastrophicFailure(1);
1418:info:build                        ^
1419:info:build cdnewlib.c:1945:10: warning: cast to 'long *' from smaller integer type 'int' [-Wint-to-pointer-cast]
1420:info:build                 return (long*)CatastrophicFailure(1);
1421:info:build                        ^
1422:info:build cdnewlib.c:2117:10: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_Byte *' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1423:info:build                 return FALSE;
1424:info:build                        ^~~~~
1425:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1426:info:build #define FALSE ((Nlm_Boolean)0)
1427:info:build               ^~~~~~~~~~~~~~~~
1428:info:build cdnewlib.c:2679:48: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
1429:info:build                                 strncat(volname,cddev->volume->volume_name,sizeof volname);
1430:info:build                                                                            ^~~~~~~~~~~~~~
1431:info:build cdnewlib.c:2679:48: note: change the argument to be the free space in the destination buffer minus the terminating null byte
1432:info:build                                 strncat(volname,cddev->volume->volume_name,sizeof volname);
1433:info:build                                                                            ^~~~~~~~~~~~~~
1434:info:build                                                                            sizeof(volname) - strlen(volname) - 1
1435:info:build cdnewlib.c:2751:33: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
1436:info:build                 strncat(fpath,cddev->inf.root,sizeof fpath);
1437:info:build                                               ^~~~~~~~~~~~
1438:info:build cdnewlib.c:2751:33: note: change the argument to be the free space in the destination buffer minus the terminating null byte
1439:info:build                 strncat(fpath,cddev->inf.root,sizeof fpath);
1440:info:build                                               ^~~~~~~~~~~~
1441:info:build                                               sizeof(fpath) - strlen(fpath) - 1
1442:info:build cdnewlib.c:2769:36: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
1443:info:build                                         strncat(fpath,cddev->inf.root,sizeof fpath);
1444:info:build                                                                       ^~~~~~~~~~~~
1445:info:build cdnewlib.c:2769:36: note: change the argument to be the free space in the destination buffer minus the terminating null byte
1446:info:build                                         strncat(fpath,cddev->inf.root,sizeof fpath);
1447:info:build                                                                       ^~~~~~~~~~~~
1448:info:build                                                                       sizeof(fpath) - strlen(fpath) - 1
1449:info:build 7 warnings generated.
1450:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  casn.c
1451:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  cdconfig.c
1452:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objentr.c
1453:info:build rm -f libncbicdr.a
1454:info:build ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
1455:info:build cp -p libncbicdr.a ../lib
1456:info:build ranlib ../lib/libncbicdr.a
1457:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  accentr.c
1458:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  accutils.c
1459:info:build rm -f libncbiacc.a
1460:info:build ar cru libncbiacc.a accentr.o accutils.o
1461:info:build cp -p libncbiacc.a ../lib
1462:info:build ranlib ../lib/libncbiacc.a
1463:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  corematx.c
1464:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  dvncode.c
1465:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmmdb1.c
1466:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmmdb2.c
1467:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmmdb3.c
1468:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objcn3d.c
1469:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mmdbapi.c
1470:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mmdbapi1.c
1471:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mmdbapi2.c
1472:info:build mmdbapi2.c:1477:6: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1473:info:build      else
1474:info:build      ^
1475:info:build mmdbapi2.c:1497:17: warning: if statement has empty body [-Wempty-body]
1476:info:build     if (iCoord) ; /* later eh */
1477:info:build                 ^
1478:info:build mmdbapi2.c:1497:17: note: put the semicolon on a separate line to silence this warning
1479:info:build 2 warnings generated.
1480:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mmdbapi3.c
1481:info:build mmdbapi3.c:843:9: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1482:info:build         else if (org->taxname) sprintf(orgstring, "ORGANISM_SCIENTIFIC: %s",
1483:info:build         ^
1484:info:build 1 warning generated.
1485:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mmdbapi4.c
1486:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mmdbentr.c
1487:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  vastsubs.c
1488:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  prunebsc.c
1489:info:build prunebsc.c:559:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1490:info:build     if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
1491:info:build         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1492:info:build prunebsc.c:559:13: note: place parentheses around the assignment to silence this warning
1493:info:build     if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
1494:info:build             ^
1495:info:build         (                                                              )
1496:info:build prunebsc.c:559:13: note: use '==' to turn this assignment into an equality comparison
1497:info:build     if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
1498:info:build             ^
1499:info:build             ==
1500:info:build prunebsc.c:574:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1501:info:build     if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
1502:info:build         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1503:info:build prunebsc.c:574:13: note: place parentheses around the assignment to silence this warning
1504:info:build     if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
1505:info:build             ^
1506:info:build         (                                                        )
1507:info:build prunebsc.c:574:13: note: use '==' to turn this assignment into an equality comparison
1508:info:build     if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
1509:info:build             ^
1510:info:build             ==
1511:info:build prunebsc.c:663:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1512:info:build     if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
1513:info:build         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1514:info:build prunebsc.c:663:13: note: place parentheses around the assignment to silence this warning
1515:info:build     if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
1516:info:build             ^
1517:info:build         (                                                                      )
1518:info:build prunebsc.c:663:13: note: use '==' to turn this assignment into an equality comparison
1519:info:build     if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
1520:info:build             ^
1521:info:build             ==
1522:info:build 3 warnings generated.
1523:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objcdd.c
1524:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  cddutil.c
1525:info:build cddutil.c:1034:8: warning: address of function 'CddHasConsensus' will always evaluate to 'true' [-Wpointer-bool-conversion]
1526:info:build   if (!CddHasConsensus) return FALSE;
1527:info:build       ~^~~~~~~~~~~~~~~
1528:info:build cddutil.c:1034:8: note: prefix with the address-of operator to silence this warning
1529:info:build   if (!CddHasConsensus) return FALSE;
1530:info:build        ^
1531:info:build        &
1532:info:build cddutil.c:1291:24: warning: expression which evaluates to zero treated as a null pointer constant of type 'BioseqPtr' (aka 'struct bioseq *') [-Wnon-literal-null-conversion]
1533:info:build   if (from < 0) return FALSE;
1534:info:build                        ^~~~~
1535:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1536:info:build #define FALSE ((Nlm_Boolean)0)
1537:info:build               ^~~~~~~~~~~~~~~~
1538:info:build cddutil.c:4838:17: warning: comparison of array 'ckptFileName' not equal to a null pointer is always true [-Wtautological-pointer-compare]
1539:info:build     if (NULL != ckptFileName)
1540:info:build         ~~~~    ^~~~~~~~~~~~
1541:info:build cddutil.c:6267:1: warning: '/*' within block comment [-Wcomment]
1542:info:build /*---------------------------------------------------------------------------*/
1543:info:build ^
1544:info:build 4 warnings generated.
1545:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  cddposutil.c
1546:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  objmime.c
1547:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  strucapi.c
1548:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdalgs.c
1549:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdatd.c
1550:info:build thrdatd.c:1804:40: warning: data argument not used by format string [-Wformat-extra-args]
1551:info:build   fprintf(pFile, "for each thread:\n", ttb->n);
1552:info:build                  ~~~~~~~~~~~~~~~~~~~~  ^
1553:info:build 1 warning generated.
1554:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdbwfi.c
1555:info:build thrdbwfi.c:114:1: warning: non-void function does not return a value [-Wreturn-type]
1556:info:build }
1557:info:build ^
1558:info:build 1 warning generated.
1559:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdcpal.c
1560:info:build thrdcpal.c:210:1: warning: non-void function does not return a value [-Wreturn-type]
1561:info:build }
1562:info:build ^
1563:info:build 1 warning generated.
1564:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdcpll.c
1565:info:build thrdcpll.c:229:1: warning: non-void function does not return a value [-Wreturn-type]
1566:info:build }
1567:info:build ^
1568:info:build 1 warning generated.
1569:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdcprl.c
1570:info:build thrdcprl.c:261:1: warning: non-void function does not return a value [-Wreturn-type]
1571:info:build }
1572:info:build ^
1573:info:build 1 warning generated.
1574:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdcxei.c
1575:info:build thrdcxei.c:205:1: warning: non-void function does not return a value [-Wreturn-type]
1576:info:build }
1577:info:build ^
1578:info:build 1 warning generated.
1579:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrddgri.c
1580:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdrsmp.c
1581:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdsal0.c
1582:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdsalr.c
1583:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdsalu.c
1584:info:build thrdsalu.c:83:1: warning: non-void function does not return a value [-Wreturn-type]
1585:info:build }
1586:info:build ^
1587:info:build 1 warning generated.
1588:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdsgoi.c
1589:info:build thrdsgoi.c:123:1: warning: non-void function does not return a value [-Wreturn-type]
1590:info:build }
1591:info:build ^
1592:info:build 1 warning generated.
1593:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdslo0.c
1594:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdslor.c
1595:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdslou.c
1596:info:build thrdslou.c:114:1: warning: non-void function does not return a value [-Wreturn-type]
1597:info:build }
1598:info:build ^
1599:info:build 1 warning generated.
1600:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdspci.c
1601:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdspea.c
1602:info:build thrdspea.c:189:1: warning: non-void function does not return a value [-Wreturn-type]
1603:info:build }
1604:info:build ^
1605:info:build 1 warning generated.
1606:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdspel.c
1607:info:build thrdspel.c:188:1: warning: non-void function does not return a value [-Wreturn-type]
1608:info:build }
1609:info:build ^
1610:info:build 1 warning generated.
1611:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdspni.c
1612:info:build thrdspni.c:238:1: warning: non-void function does not return a value [-Wreturn-type]
1613:info:build }
1614:info:build ^
1615:info:build 1 warning generated.
1616:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdttb0.c
1617:info:build thrdttb0.c:75:1: warning: non-void function does not return a value [-Wreturn-type]
1618:info:build }
1619:info:build ^
1620:info:build 1 warning generated.
1621:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdttbi.c
1622:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  thrdzsc.c
1623:info:build thrdzsc.c:369:1: warning: non-void function does not return a value [-Wreturn-type]
1624:info:build }
1625:info:build ^
1626:info:build 1 warning generated.
1627:info:build rm -f libncbimmdb.a
1628:info:build ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o  thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
1629:info:build cp -p libncbimmdb.a ../lib
1630:info:build ranlib ../lib/libncbimmdb.a
1631:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  csim.c
1632:info:build csim.c:1363:3: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1633:info:build                 else
1634:info:build                 ^
1635:info:build 1 warning generated.
1636:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  db_slist.c
1637:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  dust.c
1638:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_dust.c
1639:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  falign.c
1640:info:build falign.c:668:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1641:info:build                 if (df = cdiag_prev[l]) {
1642:info:build                     ~~~^~~~~~~~~~~~~~~
1643:info:build falign.c:668:10: note: place parentheses around the assignment to silence this warning
1644:info:build                 if (df = cdiag_prev[l]) {
1645:info:build                        ^
1646:info:build                     (                 )
1647:info:build falign.c:668:10: note: use '==' to turn this assignment into an equality comparison
1648:info:build                 if (df = cdiag_prev[l]) {
1649:info:build                        ^
1650:info:build                        ==
1651:info:build falign.c:710:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1652:info:build                 if (df = diag_prev[len1+len2-1-pos]) {
1653:info:build                     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
1654:info:build falign.c:710:10: note: place parentheses around the assignment to silence this warning
1655:info:build                 if (df = diag_prev[len1+len2-1-pos]) {
1656:info:build                        ^
1657:info:build                     (                              )
1658:info:build falign.c:710:10: note: use '==' to turn this assignment into an equality comparison
1659:info:build                 if (df = diag_prev[len1+len2-1-pos]) {
1660:info:build                        ^
1661:info:build                        ==
1662:info:build falign.c:719:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1663:info:build                 if (df=diag_prev[l]) {
1664:info:build                     ~~^~~~~~~~~~~~~
1665:info:build falign.c:719:9: note: place parentheses around the assignment to silence this warning
1666:info:build                 if (df=diag_prev[l]) {
1667:info:build                       ^
1668:info:build                     (              )
1669:info:build falign.c:719:9: note: use '==' to turn this assignment into an equality comparison
1670:info:build                 if (df=diag_prev[l]) {
1671:info:build                       ^
1672:info:build                       ==
1673:info:build falign.c:881:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1674:info:build                 if (df = diag_prev[len1+se2-pos]) {
1675:info:build                     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~
1676:info:build falign.c:881:10: note: place parentheses around the assignment to silence this warning
1677:info:build                 if (df = diag_prev[len1+se2-pos]) {
1678:info:build                        ^
1679:info:build                     (                           )
1680:info:build falign.c:881:10: note: use '==' to turn this assignment into an equality comparison
1681:info:build                 if (df = diag_prev[len1+se2-pos]) {
1682:info:build                        ^
1683:info:build                        ==
1684:info:build falign.c:889:10: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1685:info:build                 if (df = diag_prev[len1+se2-pos]) {
1686:info:build                     ~~~^~~~~~~~~~~~~~~~~~~~~~~~~
1687:info:build falign.c:889:10: note: place parentheses around the assignment to silence this warning
1688:info:build                 if (df = diag_prev[len1+se2-pos]) {
1689:info:build                        ^
1690:info:build                     (                           )
1691:info:build falign.c:889:10: note: use '==' to turn this assignment into an equality comparison
1692:info:build                 if (df = diag_prev[len1+se2-pos]) {
1693:info:build                        ^
1694:info:build                        ==
1695:info:build falign.c:1547:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1696:info:build         if (pf = diag_prev[ocur_diag]) {
1697:info:build             ~~~^~~~~~~~~~~~~~~~~~~~~~
1698:info:build falign.c:1547:9: note: place parentheses around the assignment to silence this warning
1699:info:build         if (pf = diag_prev[ocur_diag]) {
1700:info:build                ^
1701:info:build             (                        )
1702:info:build falign.c:1547:9: note: use '==' to turn this assignment into an equality comparison
1703:info:build         if (pf = diag_prev[ocur_diag]) {
1704:info:build                ^
1705:info:build                ==
1706:info:build falign.c:1897:8: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1707:info:build         if (s = findS(f->bgf)) {
1708:info:build             ~~^~~~~~~~~~~~~~~
1709:info:build falign.c:1897:8: note: place parentheses around the assignment to silence this warning
1710:info:build         if (s = findS(f->bgf)) {
1711:info:build               ^
1712:info:build             (                )
1713:info:build falign.c:1897:8: note: use '==' to turn this assignment into an equality comparison
1714:info:build         if (s = findS(f->bgf)) {
1715:info:build               ^
1716:info:build               ==
1717:info:build falign.c:1958:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1718:info:build         if (pf = diag_prev[cur_diag]) {
1719:info:build             ~~~^~~~~~~~~~~~~~~~~~~~~
1720:info:build falign.c:1958:9: note: place parentheses around the assignment to silence this warning
1721:info:build         if (pf = diag_prev[cur_diag]) {
1722:info:build                ^
1723:info:build             (                       )
1724:info:build falign.c:1958:9: note: use '==' to turn this assignment into an equality comparison
1725:info:build         if (pf = diag_prev[cur_diag]) {
1726:info:build                ^
1727:info:build                ==
1728:info:build falign.c:1999:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1729:info:build         if (pf = cdiag_prev[cur_diag]) {
1730:info:build             ~~~^~~~~~~~~~~~~~~~~~~~~~
1731:info:build falign.c:1999:9: note: place parentheses around the assignment to silence this warning
1732:info:build         if (pf = cdiag_prev[cur_diag]) {
1733:info:build                ^
1734:info:build             (                        )
1735:info:build falign.c:1999:9: note: use '==' to turn this assignment into an equality comparison
1736:info:build         if (pf = cdiag_prev[cur_diag]) {
1737:info:build                ^
1738:info:build                ==
1739:info:build falign.c:2054:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1740:info:build         if (pf = cdiag_prev[cur_diag]) {
1741:info:build             ~~~^~~~~~~~~~~~~~~~~~~~~~
1742:info:build falign.c:2054:9: note: place parentheses around the assignment to silence this warning
1743:info:build         if (pf = cdiag_prev[cur_diag]) {
1744:info:build                ^
1745:info:build             (                        )
1746:info:build falign.c:2054:9: note: use '==' to turn this assignment into an equality comparison
1747:info:build         if (pf = cdiag_prev[cur_diag]) {
1748:info:build                ^
1749:info:build                ==
1750:info:build falign.c:2109:9: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1751:info:build         if (pf = cdiag_prev[cur_diag]) {
1752:info:build             ~~~^~~~~~~~~~~~~~~~~~~~~~
1753:info:build falign.c:2109:9: note: place parentheses around the assignment to silence this warning
1754:info:build         if (pf = cdiag_prev[cur_diag]) {
1755:info:build                ^
1756:info:build             (                        )
1757:info:build falign.c:2109:9: note: use '==' to turn this assignment into an equality comparison
1758:info:build         if (pf = cdiag_prev[cur_diag]) {
1759:info:build                ^
1760:info:build                ==
1761:info:build 11 warnings generated.
1762:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  g_any.c
1763:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sim2.c
1764:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sim3.c
1765:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sim4.c
1766:info:build sim4.c:630:12: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1767:info:build   while(i1 = sgp->Blist[i].next) {
1768:info:build         ~~~^~~~~~~~~~~~~~~~~~~~
1769:info:build sim4.c:630:12: note: place parentheses around the assignment to silence this warning
1770:info:build   while(i1 = sgp->Blist[i].next) {
1771:info:build            ^
1772:info:build         (                      )
1773:info:build sim4.c:630:12: note: use '==' to turn this assignment into an equality comparison
1774:info:build   while(i1 = sgp->Blist[i].next) {
1775:info:build            ^
1776:info:build            ==
1777:info:build sim4.c:1792:16: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1778:info:build              } else goto fin;
1779:info:build                ^
1780:info:build sim4.c:1836:27: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1781:info:build                         } else goto fin;
1782:info:build                           ^
1783:info:build sim4.c:1881:27: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1784:info:build                         } else goto fin;
1785:info:build                           ^
1786:info:build sim4.c:1989:22: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1787:info:build                    } else goto fin;
1788:info:build                      ^
1789:info:build sim4.c:2035:22: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1790:info:build                    } else goto fin;
1791:info:build                      ^
1792:info:build sim4.c:2080:22: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1793:info:build                    } else goto fin;
1794:info:build                      ^
1795:info:build 7 warnings generated.
1796:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  simutil.c
1797:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  slist.c
1798:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  sec.c
1799:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  tfuns.c
1800:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  toasn3.c
1801:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  toporg.c
1802:info:build toporg.c:4171:12: warning: logical not is only applied to the left hand side of this comparison [-Wlogical-not-parentheses]
1803:info:build         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
1804:info:build            ^                       ~~
1805:info:build toporg.c:4171:12: note: add parentheses after the '!' to evaluate the comparison first
1806:info:build         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
1807:info:build            ^
1808:info:build             (                                                 )
1809:info:build toporg.c:4171:12: note: add parentheses around left hand side expression to silence this warning
1810:info:build         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
1811:info:build            ^
1812:info:build            (                      )
1813:info:build 1 warning generated.
1814:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pobutil.c
1815:info:build pobutil.c:2380:27: warning: setting buffer to a 'sizeof' expression; did you mean to transpose the last two arguments? [-Wmemset-transposed-args]
1816:info:build         MemSet((Pointer) (&tmp), sizeof(ValNode), 0);
1817:info:build                                  ^
1818:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1819:info:build #define MemSet  Nlm_MemSet
1820:info:build                 ^
1821:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1822:info:build #define Nlm_MemSet  memset
1823:info:build                     ^
1824:info:build pobutil.c:2380:27: note: cast the second argument to 'int' to silence
1825:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1826:info:build #define MemSet  Nlm_MemSet
1827:info:build                 ^
1828:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1829:info:build #define Nlm_MemSet  memset
1830:info:build                     ^
1831:info:build pobutil.c:2381:26: warning: setting buffer to a 'sizeof' expression; did you mean to transpose the last two arguments? [-Wmemset-transposed-args]
1832:info:build         MemSet((Pointer) (&si), sizeof(SeqInt), 0);
1833:info:build                                 ^
1834:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1835:info:build #define MemSet  Nlm_MemSet
1836:info:build                 ^
1837:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1838:info:build #define Nlm_MemSet  memset
1839:info:build                     ^
1840:info:build pobutil.c:2381:26: note: cast the second argument to 'int' to silence
1841:info:build ../include/ncbimem.h:210:17: note: expanded from macro 'MemSet'
1842:info:build #define MemSet  Nlm_MemSet
1843:info:build                 ^
1844:info:build ../include/ncbimem.h:191:21: note: expanded from macro 'Nlm_MemSet'
1845:info:build #define Nlm_MemSet  memset
1846:info:build                     ^
1847:info:build 2 warnings generated.
1848:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  stsutil.c
1849:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  suggadj.c
1850:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  suggest.c
1851:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  suggslp.c
1852:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast.c
1853:info:build blast.c:3179:29: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1854:info:build         if (virtual_oidlist = rdfp_chain->oidlist) {
1855:info:build             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
1856:info:build blast.c:3179:29: note: place parentheses around the assignment to silence this warning
1857:info:build         if (virtual_oidlist = rdfp_chain->oidlist) {
1858:info:build                             ^
1859:info:build             (                                    )
1860:info:build blast.c:3179:29: note: use '==' to turn this assignment into an equality comparison
1861:info:build         if (virtual_oidlist = rdfp_chain->oidlist) {
1862:info:build                             ^
1863:info:build                             ==
1864:info:build blast.c:3210:29: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
1865:info:build         if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
1866:info:build             ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1867:info:build blast.c:3210:29: note: place parentheses around the assignment to silence this warning
1868:info:build         if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
1869:info:build                             ^
1870:info:build             (                                             )
1871:info:build blast.c:3210:29: note: use '==' to turn this assignment into an equality comparison
1872:info:build         if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
1873:info:build                             ^
1874:info:build                             ==
1875:info:build blast.c:10121:25: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1876:info:build                         else if( del_index < new_index )
1877:info:build                         ^
1878:info:build 3 warnings generated.
1879:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blastutl.c
1880:info:build blastutl.c:7542:12: warning: expression result unused [-Wunused-value]
1881:info:build stop_timer("after repeat filtering");
1882:info:build            ^~~~~~~~~~~~~~~~~~~~~~~~
1883:info:build blastutl.c:10270:12: warning: expression result unused [-Wunused-value]
1884:info:build stop_timer("after BlastGappedScoreInternal");
1885:info:build            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1886:info:build 2 warnings generated.
1887:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blastool.c
1888:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blastconcat.c
1889:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  splutil.c
1890:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gapxdrop.c
1891:info:build gapxdrop.c:866:4: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1892:info:build           else if ((t/10)%3 == 2) k = 3;
1893:info:build           ^
1894:info:build gapxdrop.c:869:4: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1895:info:build           else if ((t/30) == 2) k = 3;
1896:info:build           ^
1897:info:build 2 warnings generated.
1898:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bandalg0.c
1899:info:build bandalg0.c:277:4: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1900:info:build         } else {
1901:info:build           ^
1902:info:build 1 warning generated.
1903:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bandalg1.c
1904:info:build bandalg1.c:210:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1905:info:build       else data->CD[leftd - 1].DD = e;
1906:info:build       ^
1907:info:build 1 warning generated.
1908:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bandalg2.c
1909:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bandalg3.c
1910:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bandalg4.c
1911:info:build bandalg4.c:828:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1912:info:build       else if ((t/10)%3 == 2) k = 3;
1913:info:build       ^
1914:info:build bandalg4.c:831:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1915:info:build       else if ((t/30) == 2) k = 3;
1916:info:build       ^
1917:info:build 2 warnings generated.
1918:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bandalg5.c
1919:info:build bandalg5.c:294:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1920:info:build       else if ((t/10)%3 == 2) k = 3;
1921:info:build       ^
1922:info:build bandalg5.c:297:7: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1923:info:build       else if ((t/30) == 2) k = 3;
1924:info:build       ^
1925:info:build 2 warnings generated.
1926:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bandalgn.c
1927:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blastkar.c
1928:info:build blastkar.c:4936:10: warning: implicit conversion from 'double' to 'Nlm_Int2' (aka 'short') changes value from 0.5 to 0 [-Wliteral-conversion]
1929:info:build                 return 0.5;
1930:info:build                 ~~~~~~ ^~~
1931:info:build 1 warning generated.
1932:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  actutils.c
1933:info:build actutils.c:2822:84: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1934:info:build       slp = SeqLocCopyRegion (sip, sfp->location, bsp, 0, bsp->length - 1, strand, FALSE);
1935:info:build                                                                                    ^~~~~
1936:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1937:info:build #define FALSE ((Nlm_Boolean)0)
1938:info:build               ^~~~~~~~~~~~~~~~
1939:info:build actutils.c:2831:88: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1940:info:build                slp = SeqLocCopyRegion (sip, cbp->loc, bsp, 0, bsp->length - 1, strand, FALSE);
1941:info:build                                                                                        ^~~~~
1942:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1943:info:build #define FALSE ((Nlm_Boolean)0)
1944:info:build               ^~~~~~~~~~~~~~~~
1945:info:build actutils.c:2843:94: warning: expression which evaluates to zero treated as a null pointer constant of type 'Nlm_BoolPtr' (aka 'unsigned char *') [-Wnon-literal-null-conversion]
1946:info:build                slp = SeqLocCopyRegion (sip, trp->anticodon, bsp, 0, bsp->length - 1, strand, FALSE);
1947:info:build                                                                                              ^~~~~
1948:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
1949:info:build #define FALSE ((Nlm_Boolean)0)
1950:info:build               ^~~~~~~~~~~~~~~~
1951:info:build 3 warnings generated.
1952:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  posit.c
1953:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  lookup.c
1954:info:build lookup.c:1198:56: warning: for loop has empty body [-Wempty-body]
1955:info:build               index>0; index=mb_lt->next_pos[index], pcount++);
1956:info:build                                                               ^
1957:info:build lookup.c:1198:56: note: put the semicolon on a separate line to silence this warning
1958:info:build 1 warning generated.
1959:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  readdb.c
1960:info:build readdb.c:2462:13: warning: add explicit braces to avoid dangling else [-Wdangling-else]
1961:info:build             else
1962:info:build             ^
1963:info:build readdb.c:3079:37: warning: format specifies type 'long long *' but the argument has type 'Nlm_Int8 *' (aka 'long *') [-Wformat]
1964:info:build                 sscanf(ptr, "%lld", &(rdbap->len));
1965:info:build                              ~~~~   ^~~~~~~~~~~~~
1966:info:build                              %ld
1967:info:build readdb.c:6205:34: warning: 'memset' call operates on objects of type 'char' while the size is based on a different type 'Nlm_CharPtr' (aka 'char *') [-Wsizeof-pointer-memaccess]
1968:info:build     MemSet(defline, '\0', sizeof(defline));
1969:info:build            ~~~~~~~               ^~~~~~~
1970:info:build readdb.c:6205:34: note: did you mean to provide an explicit length?
1971:info:build     MemSet(defline, '\0', sizeof(defline));
1972:info:build                                  ^~~~~~~
1973:info:build readdb.c:7956:60: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
1974:info:build         sprintf(opts_tmp.base_name, "%s.%02ld", base_name, volume);
1975:info:build                                         ~~~~~              ^~~~~~
1976:info:build                                         %02d
1977:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
1978:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
1979:info:build                                                        ^~~~~~~~~~~
1980:info:build readdb.c:9641:26: warning: address of array 'srp->div' will always evaluate to 'true' [-Wpointer-bool-conversion]
1981:info:build                     srp->div ? srp->div : "N/A", (long) SequenceLen,
1982:info:build                     ~~~~~^~~ ~
1983:info:build readdb.c:9690:45: warning: address of array 'pc->div' will always evaluate to 'true' [-Wpointer-bool-conversion]
1984:info:build                     (long) direc.owner, pc->div ? pc->div : "N/A",
1985:info:build                                         ~~~~^~~ ~
1986:info:build readdb.c:11517:64: warning: format specifies type 'char *' but the argument has type 'int' [-Wformat]
1987:info:build                 "(read %d fields instead of the expected %d)", total+1,
1988:info:build                                                                ^~~~~~~
1989:info:build readdb.c:11518:17: warning: format specifies type 'int' but the argument has type 'Nlm_CharPtr' (aka 'char *') [-Wformat]
1990:info:build                 difilename, readstat, kNumFieldsDiFile);
1991:info:build                 ^~~~~~~~~~
1992:info:build 8 warnings generated.
1993:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbisam.c
1994:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbisort.c
1995:info:build ncbisort.c:692:12: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
1996:info:build   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
1997:info:build   ~~~~~~~~ ^
1998:info:build ncbisort.c:692:30: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
1999:info:build   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
2000:info:build   ~~~~~~~~                   ^
2001:info:build 2 warnings generated.
2002:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salign.c
2003:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  salptool.c
2004:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkutil.c
2005:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkpcc.c
2006:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkptpf.c
2007:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkepi.c
2008:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkfltr.c
2009:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkdust.c
2010:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urksigu.c
2011:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  seg.c
2012:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkbias.c
2013:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urkcnsrt.c
2014:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  urktree.c
2015:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pseed3.c
2016:info:build pseed3.c:504:20: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2017:info:build     while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
2018:info:build            ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2019:info:build pseed3.c:504:20: note: place parentheses around the assignment to silence this warning
2020:info:build     while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
2021:info:build                    ^
2022:info:build            (                                                                                                                                                                                                                                                               )
2023:info:build pseed3.c:504:20: note: use '==' to turn this assignment into an equality comparison
2024:info:build     while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
2025:info:build                    ^
2026:info:build                    ==
2027:info:build 1 warning generated.
2028:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pattern1.c
2029:info:build pattern1.c:534:13: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2030:info:build     if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2031:info:build         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2032:info:build pattern1.c:534:13: note: place parentheses around the assignment to silence this warning
2033:info:build     if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2034:info:build             ^
2035:info:build         (                                                                            )
2036:info:build pattern1.c:534:13: note: use '==' to turn this assignment into an equality comparison
2037:info:build     if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2038:info:build             ^
2039:info:build             ==
2040:info:build pattern1.c:547:11: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2041:info:build   if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2042:info:build       ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2043:info:build pattern1.c:547:11: note: place parentheses around the assignment to silence this warning
2044:info:build   if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2045:info:build           ^
2046:info:build       (                                                                            )
2047:info:build pattern1.c:547:11: note: use '==' to turn this assignment into an equality comparison
2048:info:build   if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
2049:info:build           ^
2050:info:build           ==
2051:info:build pattern1.c:744:8: warning: type specifier missing, defaults to 'int' [-Wimplicit-int]
2052:info:build static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
2053:info:build ~~~~~~ ^
2054:info:build pattern1.c:750:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2055:info:build       if (result[i] = (a[i] & b[i]))
2056:info:build           ~~~~~~~~~~^~~~~~~~~~~~~~~
2057:info:build pattern1.c:750:21: note: place parentheses around the assignment to silence this warning
2058:info:build       if (result[i] = (a[i] & b[i]))
2059:info:build                     ^
2060:info:build           (                        )
2061:info:build pattern1.c:750:21: note: use '==' to turn this assignment into an equality comparison
2062:info:build       if (result[i] = (a[i] & b[i]))
2063:info:build                     ^
2064:info:build                     ==
2065:info:build pattern1.c:1107:6: warning: add explicit braces to avoid dangling else [-Wdangling-else]
2066:info:build             else {
2067:info:build             ^
2068:info:build 5 warnings generated.
2069:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  impatool.c
2070:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  posit2.c
2071:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mbalign.c
2072:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  vecscrn.c
2073:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  mblast.c
2074:info:build mblast.c:961:13: warning: expression result unused [-Wunused-value]
2075:info:build         stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
2076:info:build                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2077:info:build mblast.c:987:13: warning: expression result unused [-Wunused-value]
2078:info:build  stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
2079:info:build             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2080:info:build 2 warnings generated.
2081:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  rpsutil.c
2082:info:build rpsutil.c:399:9: warning: comparison of array 'underlyingMatrixName' not equal to a null pointer is always true [-Wtautological-pointer-compare]
2083:info:build     if (underlyingMatrixName != NULL)
2084:info:build         ^~~~~~~~~~~~~~~~~~~~    ~~~~
2085:info:build rpsutil.c:2190:16: warning: comparing a pointer to a null character constant; did you mean to compare to NULL? [-Wpointer-compare]
2086:info:build     if (ptr != NULLB)
2087:info:build                ^~~~~
2088:info:build                (void *)0
2089:info:build ../include/ncbistd.h:259:15: note: expanded from macro 'NULLB'
2090:info:build #define NULLB '\0'
2091:info:build               ^
2092:info:build 2 warnings generated.
2093:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  kappa.c
2094:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  xmlblast.c
2095:info:build xmlblast.c:1016:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'BlastOutputPtr' (aka 'struct struct_BlastOutput *') [-Wnon-literal-null-conversion]
2096:info:build         return FALSE;
2097:info:build                ^~~~~
2098:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
2099:info:build #define FALSE ((Nlm_Boolean)0)
2100:info:build               ^~~~~~~~~~~~~~~~
2101:info:build 1 warning generated.
2102:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  bxmlobj.c
2103:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  dotseq.c
2104:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  spidey.c
2105:info:build spidey.c:2091:37: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
2106:info:build                       fprintf(ofp2, buf);
2107:info:build                                     ^~~
2108:info:build spidey.c:2091:37: note: treat the string as an argument to avoid this
2109:info:build                       fprintf(ofp2, buf);
2110:info:build                                     ^
2111:info:build                                     "%s",
2112:info:build spidey.c:2420:39: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
2113:info:build                         fprintf(ofp2, buf);
2114:info:build                                       ^~~
2115:info:build spidey.c:2420:39: note: treat the string as an argument to avoid this
2116:info:build                         fprintf(ofp2, buf);
2117:info:build                                       ^
2118:info:build                                       "%s",
2119:info:build 2 warnings generated.
2120:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  motif.c
2121:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blfmtutl.c
2122:info:build rm -f libncbitool.a
2123:info:build ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
2124:info:build cp -p libncbitool.a ../lib
2125:info:build ranlib ../lib/libncbitool.a
2126:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  matrix_frequency_data.c
2127:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  compo_mode_condition.c
2128:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  composition_adjustment.c
2129:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  nlm_linear_algebra.c
2130:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  optimize_target_freq.c
2131:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  compo_heap.c
2132:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  smith_waterman.c
2133:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  redo_alignment.c
2134:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  unified_pvalues.c
2135:info:build rm -f libblastcompadj.a
2136:info:build ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
2137:info:build cp -p libblastcompadj.a ../lib
2138:info:build ranlib ../lib/libblastcompadj.a
2139:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  chartables.c
2140:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  get.c
2141:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  maketables.c
2142:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pcre.c
2143:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pcreposix.c
2144:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  study.c
2145:info:build rm -f libregexp.a
2146:info:build ar cru libregexp.a chartables.o get.o maketables.o pcre.o pcreposix.o study.o
2147:info:build cp -p libregexp.a ../lib
2148:info:build ranlib ../lib/libregexp.a
2149:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  aa_ungapped.c
2150:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_diagnostics.c
2151:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_engine.c
2152:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_extend.c
2153:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_filter.c
2154:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_gapalign.c
2155:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_hits.c
2156:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_itree.c
2157:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_lookup.c
2158:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_message.c
2159:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_options.c
2160:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_seg.c
2161:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_seqsrc.c
2162:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_sw.c
2163:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_setup.c
2164:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_stat.c
2165:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_traceback.c
2166:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_util.c
2167:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gapinfo.c
2168:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  greedy_align.c
2169:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  hspstream_collector.c
2170:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  link_hsps.c
2171:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  lookup_wrap.c
2172:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  na_ungapped.c
2173:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_math.c
2174:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  ncbi_std.c
2175:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  pattern.c
2176:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  phi_extend.c
2177:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  phi_lookup.c
2178:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  lookup_util.c
2179:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_encoding.c
2180:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_psi.c
2181:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_psi_priv.c
2182:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_kappa.c
2183:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  matrix_freq_ratios.c
2184:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_hspstream.c
2185:info:build blast_hspstream.c:114:32: warning: self-comparison always evaluates to false [-Wtautological-compare]
2186:info:build     if (hsp_stream->MergeFnPtr != hsp_stream->MergeFnPtr)
2187:info:build                                ^
2188:info:build 1 warning generated.
2189:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_parameters.c
2190:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_posit.c
2191:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  phi_gapalign.c
2192:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_program.c
2193:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_query_info.c
2194:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_tune.c
2195:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_aalookup.c
2196:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_nalookup.c
2197:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_aascan.c
2198:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_nascan.c
2199:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_dynarray.c
2200:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  split_query.c
2201:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  gencode_singleton.c
2202:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  index_ungapped.c
2203:info:build rm -f libblast.a
2204:info:build ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o hspstream_collector.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o
2205:info:build cp -p libblast.a ../lib
2206:info:build ranlib ../lib/libblast.a
2207:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_api.c
2208:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_input.c
2209:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_format.c
2210:info:build blast_format.c:160:16: warning: expression which evaluates to zero treated as a null pointer constant of type 'BlastOutput *' (aka 'struct struct_BlastOutput *') [-Wnon-literal-null-conversion]
2211:info:build         return FALSE;
2212:info:build                ^~~~~
2213:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
2214:info:build #define FALSE ((Nlm_Boolean)0)
2215:info:build               ^~~~~~~~~~~~~~~~
2216:info:build 1 warning generated.
2217:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_mtlock.c
2218:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_options_api.c
2219:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_prelim.c
2220:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_returns.c
2221:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_seq.c
2222:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_seqalign.c
2223:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_tabular.c
2224:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  hspstream_queue.c
2225:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  repeats_filter.c
2226:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  seqsrc_multiseq.c
2227:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  seqsrc_readdb.c
2228:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  twoseq_api.c
2229:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  dust_filter.c
2230:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  blast_message_api.c
2231:info:build rm -f libblastapi.a
2232:info:build ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o hspstream_queue.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o
2233:info:build cp -p libblastapi.a ../lib
2234:info:build ranlib ../lib/libblastapi.a
2235:info:build cc -pipe -o asntool -framework CoreServices -O2 -I../include   -L../lib asntool.c asncode.c ../lib/libncbi.a -lc
2236:info:build asncode.c:2371:9: warning: data argument not used by format string [-Wformat-extra-args]
2237:info:build                iter->stack->slot_name);
2238:info:build                ^
2239:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2240:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2241:info:build                                                        ^~~~~~~~~~~
2242:info:build asncode.c:2750:4: warning: data argument not used by format string [-Wformat-extra-args]
2243:info:build                         right_outer->slot_name);
2244:info:build                         ^
2245:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2246:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2247:info:build                                                        ^~~~~~~~~~~
2248:info:build asncode.c:2765:4: warning: data argument not used by format string [-Wformat-extra-args]
2249:info:build                         right_outer->slot_name);
2250:info:build                         ^
2251:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2252:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2253:info:build                                                        ^~~~~~~~~~~
2254:info:build asncode.c:3287:9: warning: add explicit braces to avoid dangling else [-Wdangling-else]
2255:info:build       } else if (now_atp->type->isa == CHOICE_TYPE) {
2256:info:build         ^
2257:info:build asncode.c:3472:59: warning: format specifies type 'unsigned int' but the argument has type 'AsnCodeSpooledPtr' (aka 'struct struct_spooled *') [-Wformat]
2258:info:build             fprintf ((iter->acip -> bug_fp), "Dumping:%x<%s>\n", routine, TESTNIL (line->line));
2259:info:build                                                       ~~         ^~~~~~~
2260:info:build asncode.c:3509:69: warning: format specifies type 'unsigned int' but the argument has type 'AsnCodeSpooledPtr' (aka 'struct struct_spooled *') [-Wformat]
2261:info:build       fprintf ((iter->acip -> bug_fp), "Buf (%d):%x<%s>\n", lineno, iter->cur_routine, TESTNIL (iter->buf));
2262:info:build                                                  ~~                 ^~~~~~~~~~~~~~~~~
2263:info:build asncode.c:4366:9: warning: add explicit braces to avoid dangling else [-Wdangling-else]
2264:info:build       } else {
2265:info:build         ^
2266:info:build asncode.c:4639:88: warning: data argument not used by format string [-Wformat-extra-args]
2267:info:build      sprintf (iter->buf, "\treturn (Pointer) %sAsnRead (aip, atp);\n}\n\n", objnamemc, objnamemc);
2268:info:build                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~             ^
2269:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2270:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2271:info:build                                                        ^~~~~~~~~~~
2272:info:build 8 warnings generated.
2273:info:build cp -p asntool ../bin
2274:info:build make -f makedemo.unx CFLAGS1="-DNDEBUG -O2 -c" LDFLAGS1="-framework CoreServices -O2" SHELL="/bin/sh" LCL="dwn" RAN="ranlib" AR="ar" CC="cc -pipe"
2275:info:build ./ln-if-absent ../demo/*.* .
2276:info:build ./ln-if-absent ../regexp/test/*.* .
2277:info:build ./ln-if-absent ../regexp/demo/*.* .
2278:info:build ./ln-if-absent ../internal/*.* .
2279:info:build set: No match.
2280:info:build make: [copy] Error 1 (ignored)
2281:info:build chmod -R ug+rw,o+r .
2282:info:build echo Waiting...go
2283:info:build Waiting...go
2284:info:build cc -pipe -o testcore -framework CoreServices -O2 -I../include  -L../lib  testcore.c  -lncbi  -lm
2285:info:build testcore.c:326:34: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2286:info:build             sprintf(tbuf, "%ld", value);
2287:info:build                            ~~~   ^~~~~
2288:info:build                            %d
2289:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2290:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2291:info:build                                                        ^~~~~~~~~~~
2292:info:build 1 warning generated.
2293:info:build cc -pipe -o makeset -framework CoreServices -O2 -I../include  -L../lib  makeset.c  -lncbiobj -lncbi  -lm
2294:info:build cc -pipe -o getmesh -framework CoreServices -O2 -I../include  -L../lib  getmesh.c  -lncbiobj -lncbi  -lm
2295:info:build cc -pipe -o indexpub -framework CoreServices -O2 -I../include  -L../lib  indexpub.c  -lncbiobj -lncbi  -lm
2296:info:build indexpub.c:60:29: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2297:info:build                         fprintf(fp, "%ld %ld\n", uid, seekptr);
2298:info:build                                      ~~~         ^~~
2299:info:build                                      %d
2300:info:build indexpub.c:60:34: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2301:info:build                         fprintf(fp, "%ld %ld\n", uid, seekptr);
2302:info:build                                          ~~~          ^~~~~~~
2303:info:build                                          %d
2304:info:build 2 warnings generated.
2305:info:build cc -pipe -o getpub -framework CoreServices -O2 -I../include  -L../lib  getpub.c  -lncbiobj -lncbi  -lm
2306:info:build getpub.c:64:34: warning: format specifies type 'long *' but the argument has type 'Nlm_Int4 *' (aka 'int *') [-Wformat]
2307:info:build                 retval = fscanf(fp, "%ld %ld", &uid, &seekptr);
2308:info:build                                      ~~~       ^~~~
2309:info:build                                      %d
2310:info:build getpub.c:64:40: warning: format specifies type 'long *' but the argument has type 'Nlm_Int4 *' (aka 'int *') [-Wformat]
2311:info:build                 retval = fscanf(fp, "%ld %ld", &uid, &seekptr);
2312:info:build                                          ~~~         ^~~~~~~~
2313:info:build                                          %d
2314:info:build 2 warnings generated.
2315:info:build cc -pipe -o testobj -framework CoreServices -O2 -I../include  -L../lib  testobj.c  -lncbiobj -lncbi  -lm
2316:info:build cc -pipe -o seqtest -framework CoreServices -O2 -I../include  -L../lib  seqtest.c  -lncbiobj -lncbi  -lm
2317:info:build seqtest.c:98:46: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2318:info:build                 fprintf(fp, "len=%ld gaps=%ld segs=%ld\n", BioseqGetLen(seqlist[i]),
2319:info:build                                  ~~~                       ^~~~~~~~~~~~~~~~~~~~~~~~
2320:info:build                                  %d
2321:info:build seqtest.c:99:3: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2322:info:build                 BioseqGetGaps(seqlist[i]), numseg);
2323:info:build                 ^~~~~~~~~~~~~~~~~~~~~~~~~
2324:info:build seqtest.c:99:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2325:info:build                 BioseqGetGaps(seqlist[i]), numseg);
2326:info:build                                            ^~~~~~
2327:info:build seqtest.c:103:34: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2328:info:build                                 fprintf(fp, "  len = %ld\n", lens[j]);
2329:info:build                                                      ~~~     ^~~~~~~
2330:info:build                                                      %d
2331:info:build 4 warnings generated.
2332:info:build cc -pipe -o dosimple -framework CoreServices -O2 -I../include  -L../lib  dosimple.c  -lncbiobj -lncbi  -lm
2333:info:build cc -pipe -o asn2ff -framework CoreServices -O2 -I../include  -L../lib  asn2ff.c  -lncbiobj -lncbi  -lm
2334:info:build cc -pipe -o checksub -framework CoreServices -O2 -I../include  -L../lib  checksub.c  -lncbiobj -lncbi  -lm
2335:info:build cc -pipe -o asndhuff -framework CoreServices -O2 -I../include  -L../lib  asndhuff.c  -lncbiacc -lncbicdr -lncbiobj -lncbi  -lm
2336:info:build asndhuff.c:182:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2337:info:build         for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
2338:info:build                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2339:info:build asndhuff.c:182:21: note: place parentheses around the assignment to silence this warning
2340:info:build         for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
2341:info:build                            ^
2342:info:build                       (                                 )
2343:info:build asndhuff.c:182:21: note: use '==' to turn this assignment into an equality comparison
2344:info:build         for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
2345:info:build                            ^
2346:info:build                            ==
2347:info:build asndhuff.c:221:21: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2348:info:build         for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
2349:info:build                       ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
2350:info:build asndhuff.c:221:21: note: place parentheses around the assignment to silence this warning
2351:info:build         for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
2352:info:build                            ^
2353:info:build                       (                             )
2354:info:build asndhuff.c:221:21: note: use '==' to turn this assignment into an equality comparison
2355:info:build         for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
2356:info:build                            ^
2357:info:build                            ==
2358:info:build 2 warnings generated.
2359:info:build cc -pipe -o entrcmd -framework CoreServices -O2 -I../include  -L../lib  entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
2360:info:build entrcmd.c:722:53: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2361:info:build                     fprintf(exportFilePtr, "%ld\n", lsp->uids[i]);
2362:info:build                                             ~~~     ^~~~~~~~~~~~
2363:info:build                                             %d
2364:info:build entrcmd.c:730:50: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2365:info:build                     fprintf (master_fp, "%ld\n", lsp->uids[i]);
2366:info:build                                          ~~~     ^~~~~~~~~~~~
2367:info:build                                          %d
2368:info:build entrcmd.c:773:70: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]
2369:info:build                 fprintf (master_fp, "out of %d total entries.<P>\n", totalCount);
2370:info:build                                             ~~                       ^~~~~~~~~~
2371:info:build                                             %ld
2372:info:build entrcmd.c:887:53: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2373:info:build                     fprintf(exportFilePtr, "%ld\n", lsp->uids[i]);
2374:info:build                                             ~~~     ^~~~~~~~~~~~
2375:info:build                                             %d
2376:info:build entrcmd.c:895:50: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2377:info:build                     fprintf (master_fp, "%ld\n", lsp->uids[i]);
2378:info:build                                          ~~~     ^~~~~~~~~~~~
2379:info:build                                          %d
2380:info:build entrcmd.c:915:70: warning: format specifies type 'int' but the argument has type 'long' [-Wformat]
2381:info:build                 fprintf (master_fp, "out of %d total entries.<P>\n", totalCount);
2382:info:build                                             ~~                       ^~~~~~~~~~
2383:info:build                                             %ld
2384:info:build 6 warnings generated.
2385:info:build cc -pipe -o errhdr -framework CoreServices -O2 -I../include  -L../lib  errhdr.c  -lncbiobj -lncbi  -lm
2386:info:build errhdr.c:44:24: warning: the value of the size argument in 'strncat' is too large, might lead to a buffer overflow [-Wstrncat-size]
2387:info:build                         strncat(mod,argv[i],sizeof mod);
2388:info:build                                             ^~~~~~~~~~
2389:info:build errhdr.c:44:24: note: change the argument to be the free space in the destination buffer minus the terminating null byte
2390:info:build                         strncat(mod,argv[i],sizeof mod);
2391:info:build                                             ^~~~~~~~~~
2392:info:build                                             sizeof(mod) - strlen(mod) - 1
2393:info:build 1 warning generated.
2394:info:build cc -pipe -o cdscan -framework CoreServices -O2 -I../include  -L../lib  cdscan.c  -lncbiacc -lncbicdr -lncbiobj -lncbi  -lm
2395:info:build cc -pipe -o findspl -framework CoreServices -O2 -I../include  -L../lib  findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
2396:info:build cc -pipe -o ncbisort -framework CoreServices -O2 -I../include  -L../lib  sortcmd.c -lncbitool -lblastcompadj \
2397:info:build             -lncbi -lm
2398:info:build cc -pipe -o fa2htgs -framework CoreServices -O2 -I../include  -L../lib  fa2htgs.c -lncbiobj -lncbi  -lm
2399:info:build cc -pipe -o fastacmd -framework CoreServices -O2 -I../include  -L../lib  fastacmd.c -lncbitool -lblastcompadj \
2400:info:build             -lncbiobj -lncbi -lm
2401:info:build cc -pipe -o formatdb -framework CoreServices -O2 -I../include  -L../lib  formatdb.c -lncbitool -lblastcompadj \
2402:info:build             -lncbiobj -lncbi -lm
2403:info:build cc -pipe -o formatrpsdb -framework CoreServices -O2 -I../include  -L../lib  formatrpsdb.c -lblastapi -lncbitool \
2404:info:build             -lblastcompadj -lblast -lncbiobj -lncbi -lm
2405:info:build cc -pipe -o blast -framework CoreServices -O2 -I../include  -L../lib  blast_driver.c  -lblastapi \
2406:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2407:info:build             
2408:info:build cc -pipe -o blastall -framework CoreServices -O2 -I../include  -L../lib  blastall.c  -lblastapi \
2409:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi \
2410:info:build             -lm
2411:info:build cc -pipe -o blastall_old -framework CoreServices -O2 -I../include  -L../lib  -DBLASTALL_TOOLS_ONLY blastall.c \
2412:info:build              -lncbitool -lblastcompadj -lncbiobj -lncbi \
2413:info:build             -lm
2414:info:build cc -pipe -o blastpgp -framework CoreServices -O2 -I../include  -L../lib  blastpgp.c  -lncbitool \
2415:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2416:info:build cc -pipe -o testval -framework CoreServices -O2 -I../include  -L../lib  testval.c -lncbiobj -lncbi -lm
2417:info:build cc -pipe -o seedtop -framework CoreServices -O2 -I../include  -L../lib  seedtop.c  -lncbitool \
2418:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2419:info:build seedtop.c:358:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2420:info:build         while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2421:info:build                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2422:info:build seedtop.c:358:17: note: place parentheses around the assignment to silence this warning
2423:info:build         while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2424:info:build                        ^
2425:info:build                (
2426:info:build seedtop.c:358:17: note: use '==' to turn this assignment into an equality comparison
2427:info:build         while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2428:info:build                        ^
2429:info:build                        ==
2430:info:build 1 warning generated.
2431:info:build cc -pipe -o makemat -framework CoreServices -O2 -I../include  -L../lib  makemat.c  -lncbitool \
2432:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2433:info:build cc -pipe -o copymat -framework CoreServices -O2 -I../include  -L../lib  copymat.c  -lblast -lncbitool \
2434:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2435:info:build cc -pipe -o impala -framework CoreServices -O2 -I../include  -L../lib  profiles.c  -lncbitool \
2436:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2437:info:build cc -pipe -o megablast -framework CoreServices -O2 -I../include  -L../lib  megablast.c  -lblastapi \
2438:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2439:info:build             
2440:info:build cc -pipe -o vecscreen -framework CoreServices -O2 -I../include  -L../lib  vecscreen.c  -lncbitool \
2441:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2442:info:build cc -pipe -o gil2bin -framework CoreServices -O2 -I../include  -L../lib  gil2bin.c -lncbitool -lblastcompadj \
2443:info:build             -lncbiobj -lncbi -lm
2444:info:build gil2bin.c:73:33: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2445:info:build         fprintf(outfp, "%ld\n", gilist[i].gi);
2446:info:build                         ~~~     ^~~~~~~~~~~~
2447:info:build                         %d
2448:info:build 1 warning generated.
2449:info:build cc -pipe -o blastclust -framework CoreServices -O2 -I../include  -L../lib  blastclust.c  -lncbitool \
2450:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2451:info:build blastclust.c:430:44: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2452:info:build                 fprintf(global_fp, "%ld ", cluster[index]->elements[i]->gi);
2453:info:build                                     ~~~    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2454:info:build                                     %d
2455:info:build blastclust.c:1064:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2456:info:build        if (tmpdir = getenv("TMPDIR")) {
2457:info:build            ~~~~~~~^~~~~~~~~~~~~~~~~~
2458:info:build blastclust.c:1064:19: note: place parentheses around the assignment to silence this warning
2459:info:build        if (tmpdir = getenv("TMPDIR")) {
2460:info:build                   ^
2461:info:build            (                        )
2462:info:build blastclust.c:1064:19: note: use '==' to turn this assignment into an equality comparison
2463:info:build        if (tmpdir = getenv("TMPDIR")) {
2464:info:build                   ^
2465:info:build                   ==
2466:info:build blastclust.c:1230:47: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2467:info:build                    sprintf(id_list[i], "%ld", gi_list[i]);
2468:info:build                                         ~~~   ^~~~~~~~~~
2469:info:build                                         %d
2470:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2471:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2472:info:build                                                        ^~~~~~~~~~~
2473:info:build blastclust.c:1268:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2474:info:build                     timestr, num_queries, first_seq);
2475:info:build                              ^~~~~~~~~~~
2476:info:build blastclust.c:1268:43: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2477:info:build                     timestr, num_queries, first_seq);
2478:info:build                                           ^~~~~~~~~
2479:info:build blastclust.c:1271:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2480:info:build                     timestr, num_queries);
2481:info:build                              ^~~~~~~~~~~
2482:info:build blastclust.c:1331:31: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2483:info:build                      timestr, index+1);
2484:info:build                               ^~~~~~~
2485:info:build 7 warnings generated.
2486:info:build cc -pipe -o rpsblast -framework CoreServices -O2 -I../include  -L../lib  rpsblast.c  -lblastapi \
2487:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2488:info:build             
2489:info:build cc -pipe -o asn2xml -framework CoreServices -O2 -I../include  -L../lib  asn2xml.c -lncbiobj -lncbi -lm
2490:info:build cc -pipe -o debruijn -framework CoreServices -O2 -I../include  -L../lib  debruijn.c -lblast -lncbi -lm
2491:info:build debruijn.c:72:12: warning: assigning to 'Nlm_Uint1 *' (aka 'unsigned char *') from 'Nlm_CharPtr' (aka 'char *') converts between pointers to integer types with different sign [-Wpointer-sign]
2492:info:build   alphabet = myargs[1].strvalue;
2493:info:build            ^ ~~~~~~~~~~~~~~~~~~
2494:info:build debruijn.c:80:14: warning: passing 'Nlm_Uint1 *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
2495:info:build   k = strlen(alphabet);
2496:info:build              ^~~~~~~~
2497:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/string.h:82:28: note: passing argument to parameter '__s' here
2498:info:build size_t   strlen(const char *__s);
2499:info:build                             ^
2500:info:build debruijn.c:89:10: warning: assigning to 'Nlm_Uint1 *' (aka 'unsigned char *') from 'char *' converts between pointers to integer types with different sign [-Wpointer-sign]
2501:info:build   output = (char *) malloc(outputsize + 1);
2502:info:build          ^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2503:info:build debruijn.c:106:8: warning: passing 'Nlm_Uint1 *' (aka 'unsigned char *') to parameter of type 'const char *' converts between pointers to integer types with different sign [-Wpointer-sign]
2504:info:build   puts(output);
2505:info:build        ^~~~~~
2506:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:173:23: note: passing argument to parameter here
2507:info:build int      puts(const char *);
2508:info:build                           ^
2509:info:build debruijn.c:109:1: warning: non-void function does not return a value in all control paths [-Wreturn-type]
2510:info:build }
2511:info:build ^
2512:info:build 5 warnings generated.
2513:info:build cc -pipe -o asn2idx -framework CoreServices -O2 -I../include  -L../lib  asn2idx.c -lncbitool -lblastcompadj -lncbiobj \
2514:info:build             -lncbi -lm
2515:info:build cc -pipe -o sortbyquote -framework CoreServices -O2 -I../include  -L../lib  sortbyquote.c -lncbiobj -lncbi -lm
2516:info:build cc -pipe -o test_regexp -framework CoreServices -O2 -I../include  -L../lib  pcretest.c -lregexp
2517:info:build pcretest.c:497:5: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
2518:info:build     size_offsets_max * sizeof(int));
2519:info:build     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2520:info:build pcretest.c:779:9: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat]
2521:info:build         size, gotten_store);
2522:info:build         ^~~~
2523:info:build pcretest.c:779:15: warning: format specifies type 'int' but the argument has type 'size_t' (aka 'unsigned long') [-Wformat]
2524:info:build         size, gotten_store);
2525:info:build               ^~~~~~~~~~~~
2526:info:build pcretest.c:1021:15: warning: format specifies type 'int' but the argument has type 'unsigned long' [-Wformat]
2527:info:build               size_offsets_max * sizeof(int));
2528:info:build               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2529:info:build 4 warnings generated.
2530:info:build cc -pipe -o demo_regexp -framework CoreServices -O2 -I../include  -L../lib  pcredemo.c -lregexp
2531:info:build cc -pipe -o demo_regexp_grep -framework CoreServices -O2 -I../include  -L../lib  pcregrep.c -lregexp
2532:info:build make -f makedemo.unx CFLAGS1="-DNDEBUG -O2 -c" LDFLAGS1="-framework CoreServices -O2" SHELL="/bin/sh" LCL="dwn" RAN="ranlib" AR="ar" CC="cc -pipe" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="" blast blastall blastall_old blastpgp seedtop megablast rpsblast blastclust
2533:info:build ./ln-if-absent ../demo/*.* .
2534:info:build ./ln-if-absent ../regexp/test/*.* .
2535:info:build ./ln-if-absent ../regexp/demo/*.* .
2536:info:build ./ln-if-absent ../internal/*.* .
2537:info:build set: No match.
2538:info:build make: [copy] Error 1 (ignored)
2539:info:build chmod -R ug+rw,o+r .
2540:info:build cc -pipe -o blast -framework CoreServices -O2 -I../include  -L../lib  blast_driver.c ncbithr.o -lblastapi \
2541:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2542:info:build             
2543:info:build cc -pipe -o blastall -framework CoreServices -O2 -I../include  -L../lib  blastall.c ncbithr.o -lblastapi \
2544:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi \
2545:info:build             -lm
2546:info:build cc -pipe -o blastall_old -framework CoreServices -O2 -I../include  -L../lib  -DBLASTALL_TOOLS_ONLY blastall.c \
2547:info:build             ncbithr.o -lncbitool -lblastcompadj -lncbiobj -lncbi \
2548:info:build             -lm
2549:info:build cc -pipe -o blastpgp -framework CoreServices -O2 -I../include  -L../lib  blastpgp.c ncbithr.o -lncbitool \
2550:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2551:info:build cc -pipe -o seedtop -framework CoreServices -O2 -I../include  -L../lib  seedtop.c ncbithr.o -lncbitool \
2552:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2553:info:build seedtop.c:358:17: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2554:info:build         while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2555:info:build                ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2556:info:build seedtop.c:358:17: note: place parentheses around the assignment to silence this warning
2557:info:build         while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2558:info:build                        ^
2559:info:build                (
2560:info:build seedtop.c:358:17: note: use '==' to turn this assignment into an equality comparison
2561:info:build         while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray,
2562:info:build                        ^
2563:info:build                        ==
2564:info:build 1 warning generated.
2565:info:build cc -pipe -o megablast -framework CoreServices -O2 -I../include  -L../lib  megablast.c ncbithr.o -lblastapi \
2566:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2567:info:build             
2568:info:build cc -pipe -o rpsblast -framework CoreServices -O2 -I../include  -L../lib  rpsblast.c ncbithr.o -lblastapi \
2569:info:build             -lblast -lncbitool -lblastcompadj -lncbiobj -lncbi -lm \
2570:info:build             
2571:info:build cc -pipe -o blastclust -framework CoreServices -O2 -I../include  -L../lib  blastclust.c ncbithr.o -lncbitool \
2572:info:build             -lblastcompadj -lncbiobj -lncbi -lm
2573:info:build blastclust.c:430:44: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2574:info:build                 fprintf(global_fp, "%ld ", cluster[index]->elements[i]->gi);
2575:info:build                                     ~~~    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2576:info:build                                     %d
2577:info:build blastclust.c:1064:19: warning: using the result of an assignment as a condition without parentheses [-Wparentheses]
2578:info:build        if (tmpdir = getenv("TMPDIR")) {
2579:info:build            ~~~~~~~^~~~~~~~~~~~~~~~~~
2580:info:build blastclust.c:1064:19: note: place parentheses around the assignment to silence this warning
2581:info:build        if (tmpdir = getenv("TMPDIR")) {
2582:info:build                   ^
2583:info:build            (                        )
2584:info:build blastclust.c:1064:19: note: use '==' to turn this assignment into an equality comparison
2585:info:build        if (tmpdir = getenv("TMPDIR")) {
2586:info:build                   ^
2587:info:build                   ==
2588:info:build blastclust.c:1230:47: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2589:info:build                    sprintf(id_list[i], "%ld", gi_list[i]);
2590:info:build                                         ~~~   ^~~~~~~~~~
2591:info:build                                         %d
2592:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2593:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2594:info:build                                                        ^~~~~~~~~~~
2595:info:build blastclust.c:1268:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2596:info:build                     timestr, num_queries, first_seq);
2597:info:build                              ^~~~~~~~~~~
2598:info:build blastclust.c:1268:43: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2599:info:build                     timestr, num_queries, first_seq);
2600:info:build                                           ^~~~~~~~~
2601:info:build blastclust.c:1271:30: warning: format specifies type 'long' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2602:info:build                     timestr, num_queries);
2603:info:build                              ^~~~~~~~~~~
2604:info:build blastclust.c:1331:31: warning: format specifies type 'long' but the argument has type 'int' [-Wformat]
2605:info:build                      timestr, index+1);
2606:info:build                               ^~~~~~~
2607:info:build 7 warnings generated.
2608:info:build make -f makenet.unx CFLAGS1="-DNDEBUG -O2 -c " LDFLAGS1="-framework CoreServices -O2" SHELL="/bin/sh" AR="ar" CC="cc -pipe" RAN="ranlib" OTHERLIBS="-lc" THREAD_OBJ=ncbithr.o THREAD_OTHERLIBS="" NETENTREZVERSION="2.02c2ASN1SPEC6 " VIB="blastcl3 idfetch bl2seq asn2gb tbl2asn gene2xml nph-viewgif.cgi wblast2.REAL wblast2_cs.REAL bl2bag.cgi "
2609:info:build ./ln-if-absent ../connect/test/*.c .
2610:info:build ./ln-if-absent ../network/entrez/client/*.h ../include
2611:info:build ./ln-if-absent ../network/entrez/client/*.c .
2612:info:build ./ln-if-absent ../network/medarch/client/*.h ../include
2613:info:build ./ln-if-absent ../network/medarch/client/*.c .
2614:info:build ./ln-if-absent ../network/taxonomy/client/*.h ../include
2615:info:build set: No match.
2616:info:build make: [copy] Error 1 (ignored)
2617:info:build ./ln-if-absent ../network/taxonomy/client/*.c .
2618:info:build set: No match.
2619:info:build make: [copy] Error 1 (ignored)
2620:info:build ./ln-if-absent ../network/taxon1/common/*.h ../include
2621:info:build ./ln-if-absent ../network/taxon1/common/*.c .
2622:info:build ./ln-if-absent ../network/taxon1/taxon2/*.h ../include
2623:info:build ./ln-if-absent ../network/taxon1/taxon2/*.c .
2624:info:build ./ln-if-absent ../network/id0arch/client/*.h ../include
2625:info:build set: No match.
2626:info:build make: [copy] Error 1 (ignored)
2627:info:build ./ln-if-absent ../network/id0arch/client/*.c .
2628:info:build set: No match.
2629:info:build make: [copy] Error 1 (ignored)
2630:info:build ./ln-if-absent ../network/id1arch/*.h ../include
2631:info:build ./ln-if-absent ../network/id1arch/*.c .
2632:info:build ./ln-if-absent ../network/id2arch/*.h ../include
2633:info:build ./ln-if-absent ../network/id2arch/*.c .
2634:info:build ./ln-if-absent ../network/spell/client/*.h ../include
2635:info:build ./ln-if-absent ../network/spell/client/*.c .
2636:info:build ./ln-if-absent ../network/suggest/client/*.h ../include
2637:info:build ./ln-if-absent ../network/suggest/client/*.c .
2638:info:build ./ln-if-absent ../network/blast3/client/*.h ../include
2639:info:build ./ln-if-absent ../network/blast3/client/*.c .
2640:info:build ./ln-if-absent ../tools/taxblast.h ../include
2641:info:build ./ln-if-absent ../tools/taxblast.c .
2642:info:build ./ln-if-absent /*.c .
2643:info:build set: No match.
2644:info:build make: [copy] Error 1 (ignored)
2645:info:build ./ln-if-absent ../internal/misc/*.c .
2646:info:build set: No match.
2647:info:build make: [copy] Error 1 (ignored)
2648:info:build ./ln-if-absent ../internal/misc/*.h ../include
2649:info:build set: No match.
2650:info:build make: [copy] Error 1 (ignored)
2651:info:build ./ln-if-absent ../internal/ssparse/*.c .
2652:info:build set: No match.
2653:info:build make: [copy] Error 1 (ignored)
2654:info:build ./ln-if-absent ../internal/ssparse/*.h ../include
2655:info:build set: No match.
2656:info:build make: [copy] Error 1 (ignored)
2657:info:build ./ln-if-absent ../internal/libparsn/*.c .
2658:info:build set: No match.
2659:info:build make: [copy] Error 1 (ignored)
2660:info:build ./ln-if-absent ../internal/libparsn/*.h ../include
2661:info:build set: No match.
2662:info:build make: [copy] Error 1 (ignored)
2663:info:build ./ln-if-absent ../internal/smart/smartnet/*.c .
2664:info:build set: No match.
2665:info:build make: [copy] Error 1 (ignored)
2666:info:build ./ln-if-absent ../internal/smart/smartnet/*.h ../include
2667:info:build set: No match.
2668:info:build make: [copy] Error 1 (ignored)
2669:info:build ./ln-if-absent ../internal/www/*.c .
2670:info:build set: No match.
2671:info:build make: [copy] Error 1 (ignored)
2672:info:build ./ln-if-absent ../internal/www/*.h ../include
2673:info:build set: No match.
2674:info:build make: [copy] Error 1 (ignored)
2675:info:build ./ln-if-absent ../internal/query/*.c .
2676:info:build set: No match.
2677:info:build make: [copy] Error 1 (ignored)
2678:info:build ./ln-if-absent ../internal/query/*.h ../include
2679:info:build set: No match.
2680:info:build make: [copy] Error 1 (ignored)
2681:info:build ./ln-if-absent ../network/sybutils/ctlib/*.c .
2682:info:build set: No match.
2683:info:build make: [copy] Error 1 (ignored)
2684:info:build ./ln-if-absent ../network/sybutils/ctlib/*.h ../include
2685:info:build set: No match.
2686:info:build make: [copy] Error 1 (ignored)
2687:info:build ./ln-if-absent ../network/sybutils/oslib/*.c .
2688:info:build set: No match.
2689:info:build make: [copy] Error 1 (ignored)
2690:info:build ./ln-if-absent ../network/sybutils/oslib/*.h ../include
2691:info:build set: No match.
2692:info:build make: [copy] Error 1 (ignored)
2693:info:build ./ln-if-absent ../network/sybutils/idloadlib/*.c .
2694:info:build set: No match.
2695:info:build make: [copy] Error 1 (ignored)
2696:info:build ./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
2697:info:build set: No match.
2698:info:build make: [copy] Error 1 (ignored)
2699:info:build ./ln-if-absent ../network/nsclilib/*.h ../include
2700:info:build ./ln-if-absent ../network/nsclilib/*.c .
2701:info:build ./ln-if-absent ../network/vibnet/*.c .
2702:info:build ./ln-if-absent ../network/vibnet/*.h ../include
2703:info:build ./ln-if-absent ../cdromlib/*.h ../include
2704:info:build ./ln-if-absent ../network/wwwblast/Src/*.c .
2705:info:build ./ln-if-absent ../network/wwwblast/Src/*.h ../include
2706:info:build ./ln-if-absent ../cdromlib/accentr.c .
2707:info:build ./ln-if-absent ../cdromlib/accutils.c .
2708:info:build ./ln-if-absent ../sequin/*.* .
2709:info:build ./ln-if-absent ../demo/entrez.c .
2710:info:build ./ln-if-absent ../demo/seqget.c .
2711:info:build ./ln-if-absent ../demo/entrcmd.c .
2712:info:build ./ln-if-absent ../demo/batch.c .
2713:info:build ./ln-if-absent ../demo/qbatch.c .
2714:info:build ./ln-if-absent ../demo/elecpcr.c .
2715:info:build ./ln-if-absent ../demo/asn2fast.c .
2716:info:build ./ln-if-absent ../demo/asn2asn.c .
2717:info:build ./ln-if-absent ../demo/cleanasn.c .
2718:info:build ./ln-if-absent ../demo/cspeedtest.c .
2719:info:build ./ln-if-absent ../demo/fetchent.c .
2720:info:build ./ln-if-absent ../demo/udvmain.c .
2721:info:build ./ln-if-absent ../demo/rtestval.c .
2722:info:build ./ln-if-absent ../demo/asn2ff.c .
2723:info:build ./ln-if-absent ../demo/asn2gb.c .
2724:info:build ./ln-if-absent ../demo/asn2fsa.c .
2725:info:build ./ln-if-absent ../demo/asn2all.c .
2726:info:build ./ln-if-absent ../demo/gene2xml.c .
2727:info:build ./ln-if-absent ../demo/asnval.c .
2728:info:build ./ln-if-absent ../demo/asndisc.c .
2729:info:build ./ln-if-absent ../demo/asnmacro.c .
2730:info:build ./ln-if-absent ../demo/asnstrip.c .
2731:info:build ./ln-if-absent ../demo/tbl2asn.c .
2732:info:build ./ln-if-absent ../demo/raw2delt.c .
2733:info:build ./ln-if-absent ../demo/flint.c .
2734:info:build ./ln-if-absent ../demo/gbseqget.c .
2735:info:build ./ln-if-absent ../demo/insdseqget.c .
2736:info:build ./ln-if-absent ../demo/nps2gps.c .
2737:info:build ./ln-if-absent ../demo/testent2.c .
2738:info:build ./ln-if-absent ../demo/trna2sap.c .
2739:info:build ./ln-if-absent ../demo/trna2tbl.c .
2740:info:build ./ln-if-absent ../demo/entrez2.c .
2741:info:build ./ln-if-absent ../demo/condense.c .
2742:info:build ./ln-if-absent ../demo/spideymain.c .
2743:info:build ./ln-if-absent ../demo/dotmain.c .
2744:info:build ./ln-if-absent ../demo/ingenmain.c .
2745:info:build ./ln-if-absent ../demo/bl2seq.c .
2746:info:build ./ln-if-absent ../demo/blastall.c .
2747:info:build ./ln-if-absent ../demo/blast_driver.c .
2748:info:build ./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
2749:info:build ./ln-if-absent ../network/entrez/server/*.* .
2750:info:build set: No match.
2751:info:build make: [copy] Error 1 (ignored)
2752:info:build ./ln-if-absent ../network/suggest/server/*.* .
2753:info:build chmod -R ug+rw,o+r .
2754:info:build echo Waiting...go
2755:info:build Waiting...go
2756:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \""  ni_lib_.c
2757:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ni_debug.c
2758:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ni_service.c
2759:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" ni_error.c
2760:info:build rm -f libnetcli.a
2761:info:build ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
2762:info:build cp -p libnetcli.a ../lib
2763:info:build ranlib ../lib/libnetcli.a
2764:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" netentr.c
2765:info:build netentr.c:798:5: warning: '/*' within block comment [-Wcomment]
2766:info:build     /*MsgSetReadTimeout(Entrez_ni, 60);*/
2767:info:build     ^
2768:info:build netentr.c:2359:12: warning: expression which evaluates to zero treated as a null pointer constant of type 'EntrezHierarchyPtr' (aka 'struct EntrezHierarchy *') [-Wnon-literal-null-conversion]
2769:info:build     return FALSE;
2770:info:build            ^~~~~
2771:info:build ../include/ncbistd.h:267:15: note: expanded from macro 'FALSE'
2772:info:build #define FALSE ((Nlm_Boolean)0)
2773:info:build               ^~~~~~~~~~~~~~~~
2774:info:build 2 warnings generated.
2775:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" netlib.c
2776:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" objneten.c
2777:info:build rm -f libnetentr.a
2778:info:build ar cru libnetentr.a netentr.o netlib.o objneten.o
2779:info:build cp -p libnetentr.a ../lib
2780:info:build ranlib ../lib/libnetentr.a
2781:info:build ./ln-if-absent accentr.c Naccentr.c
2782:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" -D_NETENT_ Naccentr.c
2783:info:build rm -f libncbiNacc.a
2784:info:build ar cru libncbiNacc.a Naccentr.o accutils.o
2785:info:build cp -p libncbiNacc.a ../lib
2786:info:build ranlib ../lib/libncbiNacc.a
2787:info:build ./ln-if-absent accentr.c Caccentr.c
2788:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" -D_NET_AND_CD_ Caccentr.c
2789:info:build rm -f libncbiCacc.a
2790:info:build ar cru libncbiCacc.a Caccentr.o accutils.o
2791:info:build cp -p libncbiCacc.a ../lib
2792:info:build ranlib ../lib/libncbiCacc.a
2793:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" objblst3.c
2794:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" netblap3.c
2795:info:build rm -f libnetblast.a
2796:info:build ar cru libnetblast.a objblst3.o netblap3.o
2797:info:build cp -p libnetblast.a ../lib
2798:info:build ranlib ../lib/libnetblast.a
2799:info:build cc -pipe -g -o blastcl3 -framework CoreServices -O2 -I../include  -L../lib  -DBLAST_CS_API blastall.c \
2800:info:build             -lblastapi -lblast -lnetblast -lncbitool -lblastcompadj \
2801:info:build             -lnetcli -lncbiobj -lncbi -lc
2802:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" id1gen.c
2803:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" id1arch.c
2804:info:build id1arch.c:563:47: warning: incomplete format specifier [-Wformat]
2805:info:build                         fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
2806:info:build                                               ^
2807:info:build 1 warning generated.
2808:info:build cc -pipe -DNDEBUG -O2 -c  -I../include  -DNETENTREZVERSION="\"2.02c2ASN1SPEC6  \"" accid1.c
2809:info:build rm -f libncbiid1.a
2810:info:build ar cru libncbiid1.a id1gen.o id1arch.o accid1.o
2811:info:build cp -p libncbiid1.a ../lib
2812:info:build ranlib ../lib/libncbiid1.a
2813:info:build cc -pipe -g -o idfetch -framework CoreServices -O2 -I../include  -L../lib  idfetch.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lc
2814:info:build idfetch.c:1439:38: warning: format specifies type 'short' but the argument has type 'Nlm_Int4' (aka 'int') [-Wformat]
2815:info:build     sprintf( pFormat, "%%s%%0%hdhd", DigitsStart);
2816:info:build                              ~~~     ^~~~~~~~~~~
2817:info:build                              %d
2818:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/secure/_stdio.h:47:56: note: expanded from macro 'sprintf'
2819:info:build   __builtin___sprintf_chk (str, 0, __darwin_obsz(str), __VA_ARGS__)
2820:info:build                                                        ^~~~~~~~~~~
2821:info:build 1 warning generated.
2822:info:build cc -pipe -o bl2seq -framework CoreServices -O2 -I../include  -L../lib  bl2seq.c -lblastapi -lblast -lncbitool \
2823:info:build             -lblastcompadj -lncbiid1 -lnetcli -lncbiobj -lncbi \
2824:info:build             -lc
2825:info:build cc -pipe -g -o asn2gb -framework CoreServices -O2 -I../include  -L../lib  asn2gb.c -lncbiid1 -lnetcli \
2826:info:build             -lncbitool -lblastcompadj -lncbiobj -lncbi -lc
2827:info:build cc -pipe -o tbl2asn -framework CoreServices -O2 -I../include  -L../lib  tbl2asn.c -lncbitool -lblastcompadj \
2828:info:build             -lncbiobj -lnetcli -lncbi -lc
2829:info:build cc -pipe -g -o gene2xml -framework CoreServices -O2 -I../include  -L../lib  gene2xml.c -lnetcli -lncbiobj -lncbi -lc
2830:info:build cc -pipe -o nph-viewgif.cgi -framework CoreServices -O2 -I../include  -L../lib  viewgif.c
2831:info:build viewgif.c:85:9: error: implicit declaration of function 'write' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
2832:info:build         write(1, tmp_buff, strlen(tmp_buff));
2833:info:build         ^
2834:info:build viewgif.c:85:9: note: did you mean 'fwrite'?
2835:info:build /Library/Developer/CommandLineTools/SDKs/MacOSX.sdk/usr/include/stdio.h:165:9: note: 'fwrite' declared here
2836:info:build size_t   fwrite(const void * __restrict __ptr, size_t __size, size_t __nitems, FILE * __restrict __stream) __DARWIN_ALIAS(fwrite);
2837:info:build          ^
2838:info:build viewgif.c:94:9: error: implicit declaration of function 'write' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
2839:info:build         write(1, tmp_buff, strlen(tmp_buff));
2840:info:build         ^
2841:info:build viewgif.c:115:5: error: implicit declaration of function 'write' is invalid in C99 [-Werror,-Wimplicit-function-declaration]
2842:info:build     write(1, tmp_buff, strlen(tmp_buff));
2843:info:build     ^
2844:info:build 3 errors generated.
2845:info:build make: *** [nph-viewgif.cgi] Error 1
2846:info:build FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 2
2847:info:build #######
2848:info:build #        #####   #####    ####   #####
2849:info:build #        #    #  #    #  #    #  #    #
2850:info:build #####    #    #  #    #  #    #  #    #
2851:info:build #        #####   #####   #    #  #####
2852:info:build #        #   #   #   #   #    #  #   #
2853:info:build #######  #    #  #    #   ####   #    #
2854:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/work/ncbi_tools-20080302" && './ncbi/make/makedis.csh'
2855:info:build Exit code: 1
2856:error:build Failed to build ncbi_tools: command execution failed
2857:debug:build Error code: CHILDSTATUS 30858 1
2858:debug:build Backtrace: command execution failed
2859:debug:build     while executing
2860:debug:build "system {*}$notty {*}$nice $fullcmdstring"
2861:debug:build     invoked from within
2862:debug:build "command_exec build"
2863:debug:build     (procedure "portbuild::build_main" line 8)
2864:debug:build     invoked from within
2865:debug:build "$procedure $targetname"
2866:error:build See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncbi_tools/ncbi_tools/main.log for details.