Ticket #65522: main.log

File main.log, 62.0 KB (added by vkuznet (Valentin Kuznetsov), 2 years ago)

main log

Line 
1version:1
2:debug:clean Starting logging for R @4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11
3:debug:sysinfo macOS 11.6.7 (darwin/20.6.0) arch i386
4:debug:sysinfo MacPorts 2.7.2
5:debug:sysinfo Xcode 13.2.1
6:debug:sysinfo SDK 11
7:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 11.0
8:msg:clean --->  Computing dependencies for R:info:clean .:debug:clean R has no conflicts
9:debug:clean Searching for dependency: pkgconfig
10:debug:clean Found Dependency: receipt exists for pkgconfig
11:debug:clean Searching for dependency: gcc12
12:debug:clean Found Dependency: receipt exists for gcc12
13:debug:clean Searching for dependency: clang-14
14:debug:clean Found Dependency: receipt exists for clang-14
15:debug:clean Searching for dependency: readline
16:debug:clean Found Dependency: receipt exists for readline
17:debug:clean Searching for dependency: icu
18:debug:clean Found Dependency: receipt exists for icu
19:debug:clean Searching for dependency: libiconv
20:debug:clean Found Dependency: receipt exists for libiconv
21:debug:clean Searching for dependency: zlib
22:debug:clean Found Dependency: receipt exists for zlib
23:debug:clean Searching for dependency: pcre
24:debug:clean Found Dependency: receipt exists for pcre
25:debug:clean Searching for dependency: pcre2
26:debug:clean Found Dependency: receipt exists for pcre2
27:debug:clean Searching for dependency: libjpeg-turbo
28:debug:clean Found Dependency: receipt exists for libjpeg-turbo
29:debug:clean Searching for dependency: tiff
30:debug:clean Found Dependency: receipt exists for tiff
31:debug:clean Searching for dependency: libpng
32:debug:clean Found Dependency: receipt exists for libpng
33:debug:clean Searching for dependency: curl
34:debug:clean Found Dependency: receipt exists for curl
35:debug:clean Searching for dependency: less
36:debug:clean Found Dependency: receipt exists for less
37:debug:clean Searching for dependency: texinfo
38:debug:clean Found Dependency: receipt exists for texinfo
39:debug:clean Searching for dependency: bzip2
40:debug:clean Found Dependency: receipt exists for bzip2
41:debug:clean Searching for dependency: gzip
42:debug:clean Found Dependency: receipt exists for gzip
43:debug:clean Searching for dependency: zip
44:debug:clean Found Dependency: receipt exists for zip
45:debug:clean Searching for dependency: unzip
46:debug:clean Found Dependency: receipt exists for unzip
47:debug:clean Searching for dependency: gnutar
48:debug:clean Found Dependency: receipt exists for gnutar
49:debug:clean Searching for dependency: xz
50:debug:clean Found Dependency: receipt exists for xz
51:debug:clean Searching for dependency: libgcc
52:debug:clean Found Dependency: receipt exists for libgcc
53:debug:clean Searching for dependency: cairo
54:debug:clean Found Dependency: receipt exists for cairo
55:debug:clean Searching for dependency: pango
56:debug:clean Found Dependency: receipt exists for pango
57:debug:clean Searching for dependency: glib2
58:debug:clean Found Dependency: receipt exists for glib2
59:debug:clean Searching for dependency: freetype
60:debug:clean Found Dependency: receipt exists for freetype
61:debug:clean Searching for dependency: fontconfig
62:debug:clean Found Dependency: receipt exists for fontconfig
63:debug:clean Searching for dependency: gettext-runtime
64:debug:clean Found Dependency: receipt exists for gettext-runtime
65:debug:clean Searching for dependency: xorg-libsm
66:debug:clean Found Dependency: receipt exists for xorg-libsm
67:debug:clean Searching for dependency: xorg-libice
68:debug:clean Found Dependency: receipt exists for xorg-libice
69:debug:clean Searching for dependency: xorg-libX11
70:debug:clean Found Dependency: receipt exists for xorg-libX11
71:debug:clean Searching for dependency: xorg-libXt
72:debug:clean Found Dependency: receipt exists for xorg-libXt
73:debug:clean Searching for dependency: libomp
74:debug:clean Found Dependency: receipt exists for libomp
75:debug:main Executing org.macports.main (R)
76:debug:main dropping privileges: euid changed to 506, egid changed to 505.
77:debug:archivefetch archivefetch phase started at Fri Jul 22 10:24:44 EDT 2022
78:msg:archivefetch --->  Fetching archive for R
79:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
80:debug:archivefetch Executing org.macports.archivefetch (R)
81:debug:archivefetch euid/egid changed to: 0/0
82:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
83:debug:archivefetch euid/egid changed to: 506/505
84:info:archivefetch --->  R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
85:msg:archivefetch --->  Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://packages.macports.org/R
86:debug:archivefetch Fetching archive failed: The requested URL returned error: 404
87:msg:archivefetch --->  Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://ywg.ca.packages.macports.org/mirror/macports/packages/R
88:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
89:msg:archivefetch --->  Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://mse.uk.packages.macports.org/R
90:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
91:debug:archivefetch Privilege de-escalation not attempted as not running as root.
92:debug:fetch fetch phase started at Fri Jul 22 10:24:47 EDT 2022
93:notice:fetch --->  Fetching distfiles for R
94:debug:fetch elevating privileges for fetch: euid changed to 0, egid changed to 0.
95:debug:fetch dropping privileges: euid changed to 506, egid changed to 505.
96:debug:fetch Executing proc-pre-org.macports.fetch-fetch-0
97:debug:fetch Executing org.macports.fetch (R)
98:info:fetch --->  R-4.2.1.tar.gz does not exist in /opt/local/var/macports/distfiles/R
99:notice:fetch --->  Attempting to fetch R-4.2.1.tar.gz from https://distfiles.macports.org/R
100:debug:fetch Privilege de-escalation not attempted as not running as root.
101:debug:checksum checksum phase started at Fri Jul 22 10:24:52 EDT 2022
102:notice:checksum --->  Verifying checksums for R
103:debug:checksum Executing org.macports.checksum (R)
104:info:checksum --->  Checksumming R-4.2.1.tar.gz
105:debug:checksum Calculated (rmd160) is e0402470745998c4a41bf9ec0a57634cb7522175
106:debug:checksum Correct (rmd160) checksum for R-4.2.1.tar.gz
107:debug:checksum Calculated (sha256) is 4d52db486d27848e54613d4ee977ad952ec08ce17807e1b525b10cd4436c643f
108:debug:checksum Correct (sha256) checksum for R-4.2.1.tar.gz
109:debug:checksum Calculated (size) is 37601544
110:debug:checksum Correct (size) checksum for R-4.2.1.tar.gz
111:debug:checksum Privilege de-escalation not attempted as not running as root.
112:debug:extract extract phase started at Fri Jul 22 10:24:53 EDT 2022
113:notice:extract --->  Extracting R
114:debug:extract Executing org.macports.extract (R)
115:info:extract --->  Extracting R-4.2.1.tar.gz
116:debug:extract setting option extract.args to '/opt/local/var/macports/distfiles/R/R-4.2.1.tar.gz'
117:debug:extract Environment:
118:debug:extract CC_PRINT_OPTIONS='YES'
119:debug:extract CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS'
120:debug:extract CPATH='/opt/local/include'
121:debug:extract DEVELOPER_DIR='/Library/Developer/CommandLineTools'
122:debug:extract LIBRARY_PATH='/opt/local/lib'
123:debug:extract MACOSX_DEPLOYMENT_TARGET='11.0'
124:debug:extract SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk'
125:info:extract Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-4.2.1.tar.gz' | /usr/bin/tar -xf -
126:debug:extract system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/R/R-4.2.1.tar.gz' | /usr/bin/tar -xf -
127:debug:extract euid/egid changed to: 0/0
128:debug:extract chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work to macports
129:debug:extract euid/egid changed to: 506/505
130:debug:extract Privilege de-escalation not attempted as not running as root.
131:debug:patch patch phase started at Fri Jul 22 10:24:55 EDT 2022
132:debug:patch Executing org.macports.patch (R)
133:debug:patch Executing proc-post-org.macports.patch-patch-0
134:info:patch --->  Patching Rscript.c: s|R_HOME|"/opt/local/Library/Frameworks/R.framework/Versions/4.2/Resources"|
135:debug:patch Executing reinplace: /usr/bin/sed s|R_HOME|\"/opt/local/Library/Frameworks/R.framework/Versions/4.2/Resources\"| </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/unix/Rscript.c >@file17
136:debug:patch euid/egid changed to: 0/0
137:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/unix/Rscript.c to macports
138:debug:patch euid/egid changed to: 506/505
139:debug:patch euid/egid changed to: 0/0
140:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/unix/Rscript.c
141:debug:patch euid/egid changed to: 506/505
142:info:patch --->  Patching Defn.h: s|<libintl.h>|"libintl.h"|
143:debug:patch Executing reinplace: /usr/bin/sed s|<libintl.h>|\"libintl.h\"| </opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/include/Defn.h >@file17
144:debug:patch euid/egid changed to: 0/0
145:debug:patch chowned /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/include/Defn.h to macports
146:debug:patch euid/egid changed to: 506/505
147:debug:patch euid/egid changed to: 0/0
148:debug:patch setting attributes on /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/src/include/Defn.h
149:debug:patch euid/egid changed to: 506/505
150:debug:patch Privilege de-escalation not attempted as not running as root.
151:debug:configure configure phase started at Fri Jul 22 10:24:56 EDT 2022
152:notice:configure --->  Configuring R
153:debug:configure Preferred compilers: macports-clang-14 macports-clang-13 macports-clang-12 macports-clang-11 macports-clang-10 macports-clang-9.0
154:debug:configure Using compiler 'MacPorts Clang 14'
155:debug:configure Executing proc-pre-org.macports.configure-configure-0
156:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14
157:debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo'
158:debug:configure cairo is installed with the following variants: +quartz+x11
159:debug:configure   required: x11, forbidden:
160:debug:configure   accepted
161:debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango'
162:debug:configure pango is installed with the following variants: +quartz+x11
163:debug:configure   required: x11, forbidden:
164:debug:configure   accepted
165:debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk
166:debug:configure Executing proc-pre-org.macports.configure-configure-1
167:debug:configure compilers.enforce_c list:
168:debug:configure compilers.enforce_fortran list:
169:debug:configure compilers.enforce_some_fortran list:
170:debug:configure Executing proc-pre-org.macports.configure-configure-2
171:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14
172:debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo'
173:debug:configure cairo is installed with the following variants: +quartz+x11
174:debug:configure   required: x11, forbidden:
175:debug:configure   accepted
176:debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango'
177:debug:configure pango is installed with the following variants: +quartz+x11
178:debug:configure   required: x11, forbidden:
179:debug:configure   accepted
180:debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk
181:debug:configure Executing org.macports.configure (R)
182:debug:configure Environment:
183:debug:configure CC='/opt/local/bin/clang-mp-14'
184:debug:configure CC_PRINT_OPTIONS='YES'
185:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS'
186:debug:configure CFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
187:debug:configure CPATH='/opt/local/include'
188:debug:configure CPPFLAGS='-I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk'
189:debug:configure CXX='/opt/local/bin/clang++-mp-14'
190:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
191:debug:configure DEVELOPER_DIR='/Library/Developer/CommandLineTools'
192:debug:configure F77='/opt/local/bin/gfortran-mp-12'
193:debug:configure F90FLAGS='-pipe -Os -m64'
194:debug:configure FC='/opt/local/bin/gfortran-mp-12'
195:debug:configure FCFLAGS='-pipe -Os -m64'
196:debug:configure FFLAGS='-pipe -Os -m64'
197:debug:configure INSTALL='/usr/bin/install -c'
198:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath /opt/local/lib/libgcc -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
199:debug:configure LIBRARY_PATH='/opt/local/lib'
200:debug:configure MACOSX_DEPLOYMENT_TARGET='11.0'
201:debug:configure OBJC='/opt/local/bin/clang-mp-14'
202:debug:configure OBJCFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
203:debug:configure OBJCXX='/opt/local/bin/clang++-mp-14'
204:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
205:debug:configure R_BROWSER='/usr/bin/open'
206:debug:configure R_PDFVIEWER='/usr/bin/open'
207:debug:configure SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk'
208:debug:configure ac_cv_path_PDFLATEX=''
209:debug:configure ac_cv_path_PDFTEX=''
210:debug:configure ac_cv_path_TEX=''
211:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib
212:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib
213:info:configure checking build system type... x86_64-apple-darwin20.6.0
214:info:configure checking host system type... x86_64-apple-darwin20.6.0
215:info:configure loading site script './config.site'
216:info:configure loading build-specific script './config.site'
217:info:configure checking for pwd... /bin/pwd
218:info:configure checking whether builddir is srcdir... yes
219:info:configure checking whether ln -s works... yes
220:info:configure checking for ar... ar
221:info:configure checking for a BSD-compatible install... /usr/bin/install -c
222:info:configure checking for sed... /usr/bin/sed
223:info:configure checking for which... /usr/bin/which
224:info:configure checking for less... /opt/local/bin/less
225:info:configure checking for gtar... /opt/local/bin/gtar
226:info:configure checking for tex... (cached) no
227:info:configure checking for pdftex... (cached) no
228:info:configure configure: WARNING: you cannot build PDF versions of the R manuals
229:info:configure checking for pdflatex... (cached) no
230:info:configure configure: WARNING: you cannot build PDF versions of vignettes and help pages
231:info:configure checking for makeindex... /opt/local/bin/makeindex
232:info:configure checking for texi2any... /opt/local/bin/texi2any
233:info:configure checking whether texi2any version is at least 5.1... yes
234:info:configure checking for ginstall-info... no
235:info:configure checking for install-info... /opt/local/bin/install-info
236:info:configure checking for texi2dvi... /opt/local/bin/texi2dvi
237:info:configure checking for kpsewhich... /opt/local/bin/kpsewhich
238:info:configure checking for latex inconsolata package... missing
239:info:configure configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally
240:info:configure checking for unzip... /opt/local/bin/unzip
241:info:configure checking for zip... /opt/local/bin/zip
242:info:configure checking for gzip... /opt/local/bin/gzip
243:info:configure checking for bzip2... /opt/local/bin/bzip2
244:info:configure using default browser ... /usr/bin/open
245:info:configure checking for /usr/bin/open... /usr/bin/open
246:info:configure checking for working aclocal... found
247:info:configure checking for working autoconf... found
248:info:configure checking for working autoheader... found
249:info:configure checking for bison... bison -y
250:info:configure checking for notangle... false
251:info:configure checking for realpath... false
252:info:configure checking for pkg-config... /opt/local/bin/pkg-config
253:info:configure checking for gcc... /opt/local/bin/clang-mp-14
254:info:configure checking whether the C compiler works... yes
255:info:configure checking for C compiler default output file name... a.out
256:info:configure checking for suffix of executables...
257:info:configure checking whether we are cross compiling... no
258:info:configure checking for suffix of object files... o
259:info:configure checking whether the compiler supports GNU C... yes
260:info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes
261:info:configure checking for /opt/local/bin/clang-mp-14 option to enable C11 features... none needed
262:info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E
263:info:configure checking for grep that handles long lines and -e... /opt/local/bin/ggrep
264:info:configure checking for egrep... /opt/local/bin/ggrep -E
265:info:configure checking whether /opt/local/bin/clang-mp-14 needs -traditional... no
266:info:configure checking for stdio.h... yes
267:info:configure checking for stdlib.h... yes
268:info:configure checking for string.h... yes
269:info:configure checking for inttypes.h... yes
270:info:configure checking for stdint.h... yes
271:info:configure checking for strings.h... yes
272:info:configure checking for sys/stat.h... yes
273:info:configure checking for sys/types.h... yes
274:info:configure checking for unistd.h... yes
275:info:configure checking for wchar.h... yes
276:info:configure checking for minix/config.h... no
277:info:configure checking for sys/time.h... yes
278:info:configure checking for sys/param.h... yes
279:info:configure checking whether it is safe to define __EXTENSIONS__... yes
280:info:configure checking whether _XOPEN_SOURCE should be defined... no
281:info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E
282:info:configure looking for a modern Fortran compiler
283:info:configure checking whether the compiler supports GNU Fortran... no
284:info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -g... no
285:info:configure checking whether the compiler supports GNU C++... yes
286:info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -g... yes
287:info:configure checking for /opt/local/bin/clang++-mp-14 option to enable C++11 features... none needed
288:info:configure checking whether /opt/local/bin/clang++-mp-14 -pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64 can compile C++ code... yes
289:info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E
290:info:configure checking whether __attribute__((visibility())) is supported... no
291:info:configure checking whether /opt/local/bin/clang-mp-14 accepts -fvisibility... yes
292:info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -fvisibility... yes
293:info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -fvisibility... no
294:info:configure checking whether the compiler supports GNU Objective C... yes
295:info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes
296:info:configure checking whether /opt/local/bin/clang++-mp-14 can compile ObjC++... yes
297:info:configure checking for Objective C++ compiler... /opt/local/bin/clang++-mp-14
298:info:configure checking how to print strings... printf
299:info:configure checking for a sed that does not truncate output... (cached) /usr/bin/sed
300:info:configure checking for fgrep... /opt/local/bin/ggrep -F
301:info:configure checking for ld used by /opt/local/bin/clang-mp-14... /opt/local/libexec/llvm-14/bin/ld
302:info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no
303:info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm -B
304:info:configure checking the name lister (/opt/local/bin/nm -B) interface... BSD nm
305:info:configure checking the maximum length of command line arguments... 786432
306:info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to x86_64-apple-darwin20.6.0 format... func_convert_file_noop
307:info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to toolchain format... func_convert_file_noop
308:info:configure checking for /opt/local/libexec/llvm-14/bin/ld option to reload object files... -r
309:info:configure checking for objdump... objdump
310:info:configure checking how to recognize dependent libraries... pass_all
311:info:configure checking for dlltool... no
312:info:configure checking how to associate runtime and link libraries... printf %s\n
313:info:configure checking for archiver @FILE support... no
314:info:configure checking for strip... strip
315:info:configure checking for ranlib... ranlib
316:info:configure checking for gawk... gawk
317:info:configure checking command to parse /opt/local/bin/nm -B output from /opt/local/bin/clang-mp-14 object... ok
318:info:configure checking for sysroot... no
319:info:configure checking for a working dd... /bin/dd
320:info:configure checking how to truncate binary pipes... /bin/dd bs=4096 count=1
321:info:configure checking for mt... no
322:info:configure checking if : is a manifest tool... no
323:info:configure checking for dsymutil... dsymutil
324:info:configure checking for nmedit... nmedit
325:info:configure checking for lipo... lipo
326:info:configure checking for otool... otool
327:info:configure checking for otool64... no
328:info:configure checking for -single_module linker flag... yes
329:info:configure checking for -exported_symbols_list linker flag... yes
330:info:configure checking for -force_load linker flag... yes
331:info:configure checking for dlfcn.h... yes
332:info:configure checking for objdir... .libs
333:info:configure checking if /opt/local/bin/clang-mp-14 supports -fno-rtti -fno-exceptions... yes
334:info:configure checking for /opt/local/bin/clang-mp-14 option to produce PIC... -fno-common -DPIC
335:info:configure checking if /opt/local/bin/clang-mp-14 PIC flag -fno-common -DPIC works... yes
336:info:configure checking if /opt/local/bin/clang-mp-14 static flag -static works... no
337:info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... yes
338:info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... (cached) yes
339:info:configure checking whether the /opt/local/bin/clang-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes
340:info:configure checking dynamic linker characteristics... darwin20.6.0 dyld
341:info:configure checking how to hardcode library paths into programs... immediate
342:info:configure checking whether stripping libraries is possible... yes
343:info:configure checking if libtool supports shared libraries... yes
344:info:configure checking whether to build shared libraries... yes
345:info:configure checking whether to build static libraries... no
346:info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E
347:info:configure checking for ld used by /opt/local/bin/clang++-mp-14... /opt/local/libexec/llvm-14/bin/ld
348:info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no
349:info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes
350:info:configure checking for /opt/local/bin/clang++-mp-14 option to produce PIC... -fno-common -DPIC
351:info:configure checking if /opt/local/bin/clang++-mp-14 PIC flag -fno-common -DPIC works... yes
352:info:configure checking if /opt/local/bin/clang++-mp-14 static flag -static works... no
353:info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... yes
354:info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... (cached) yes
355:info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes
356:info:configure checking dynamic linker characteristics... darwin20.6.0 dyld
357:info:configure checking how to hardcode library paths into programs... immediate
358:info:configure checking if libtool supports shared libraries... yes
359:info:configure checking whether to build shared libraries... yes
360:info:configure checking whether to build static libraries... no
361:info:configure libtool.m4: error: problem compiling FC test program
362:info:configure checking for /opt/local/bin/gfortran-mp-12 option to produce PIC... -fno-common
363:info:configure checking if /opt/local/bin/gfortran-mp-12 PIC flag -fno-common works... no
364:info:configure checking if /opt/local/bin/gfortran-mp-12 static flag  works... no
365:info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... no
366:info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... (cached) no
367:info:configure checking whether the /opt/local/bin/gfortran-mp-12 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... no
368:info:configure checking dynamic linker characteristics... darwin20.6.0 dyld
369:info:configure checking how to hardcode library paths into programs... immediate
370:info:configure checking for sin in -lm... yes
371:info:configure checking for dlopen in -ldl... yes
372:info:configure checking for readline/history.h... yes
373:info:configure checking for readline/readline.h... yes
374:info:configure checking for rl_callback_read_char in -lreadline... yes
375:info:configure checking for history_truncate_file... yes
376:info:configure checking for tilde_expand_word... yes
377:info:configure checking whether rl_completion_matches exists and is declared... yes
378:info:configure checking whether rl_resize_terminal exists and is declared... yes
379:info:configure checking whether rl_sort_completion_matches exists and is declared... yes
380:info:configure checking for dirent.h that defines DIR... yes
381:info:configure checking for library containing opendir... none required
382:info:configure checking for sys/wait.h that is POSIX.1 compatible... yes
383:info:configure checking for dlfcn.h... (cached) yes
384:info:configure checking for fcntl.h... yes
385:info:configure checking for glob.h... yes
386:info:configure checking for grp.h... yes
387:info:configure checking for pwd.h... yes
388:info:configure checking for sched.h... yes
389:info:configure checking for strings.h... (cached) yes
390:info:configure checking for sys/resource.h... yes
391:info:configure checking for sys/select.h... yes
392:info:configure checking for sys/socket.h... yes
393:info:configure checking for sys/stat.h... (cached) yes
394:info:configure checking for sys/time.h... (cached) yes
395:info:configure checking for sys/times.h... yes
396:info:configure checking for sys/utsname.h... yes
397:info:configure checking for unistd.h... (cached) yes
398:info:configure checking for utime.h... yes
399:info:configure checking for arpa/inet.h... yes
400:info:configure checking for elf.h... no
401:info:configure checking for features.h... no
402:info:configure checking for floatingpoint.h... no
403:info:configure checking for langinfo.h... yes
404:info:configure checking for netdb.h... yes
405:info:configure checking for netinet/in.h... yes
406:info:configure checking for sys/param.h... (cached) yes
407:info:configure checking for stdalign.h... yes
408:info:configure checking for errno.h... yes
409:info:configure checking for inttypes.h... (cached) yes
410:info:configure checking for limits.h... yes
411:info:configure checking for locale.h... yes
412:info:configure checking for stdarg.h... yes
413:info:configure checking for stdbool.h... yes
414:info:configure checking for stdint.h... (cached) yes
415:info:configure checking for string.h... (cached) yes
416:info:configure checking for /opt/local/bin/clang-mp-14 options needed to detect all undeclared functions... -fno-builtin
417:info:configure checking whether setjmp.h is POSIX.1 compatible... yes
418:info:configure checking whether sigsetjmp is declared... yes
419:info:configure checking whether siglongjmp is declared... yes
420:info:configure checking for GNU C library with version >= 2... no
421:info:configure checking for uint64_t... yes
422:info:configure checking for int64_t... yes
423:info:configure checking for int_fast64_t... yes
424:info:configure checking for pid_t... yes
425:info:configure checking for size_t... yes
426:info:configure checking whether SIZE_MAX is declared... yes
427:info:configure checking for blkcnt_t... yes
428:info:configure checking for type of socket length... socklen_t *
429:info:configure checking for stack_t... yes
430:info:configure checking for intptr_t... yes
431:info:configure checking for uintptr_t... yes
432:info:configure checking whether byte ordering is bigendian... no
433:info:configure checking for an ANSI C-conforming const... yes
434:info:configure checking for inline... inline
435:info:configure checking size of int... 4
436:info:configure checking size of long... 8
437:info:configure checking size of long long... 8
438:info:configure checking size of double... 8
439:info:configure checking size of size_t... 8
440:info:configure checking for C stack direction... down
441:info:configure checking size of long double... 16
442:info:configure checking whether we can compute C Make dependencies... yes, using $(CC) -MM
443:info:configure checking whether /opt/local/bin/clang-mp-14 supports -c -o FILE.lo... yes
444:info:configure checking for /opt/local/bin/clang-mp-14 option to support OpenMP... -fopenmp
445:info:configure checking how to get verbose linking output from /opt/local/bin/gfortran-mp-12... configure: WARNING: compilation failed
446:info:configure checking for Fortran libraries of /opt/local/bin/gfortran-mp-12...
447:info:configure checking how to get verbose linking output from /opt/local/bin/clang-mp-14... configure: WARNING: cannot determine how to obtain linking information from /opt/local/bin/clang-mp-14
448:info:configure checking for C libraries of /opt/local/bin/clang-mp-14...
449:info:configure checking for dummy main to link with Fortran libraries... none
450:info:configure checking for Fortran name-mangling scheme... configure: error: in `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1':
451:info:configure configure: error: cannot compile a simple Fortran program
452:info:configure See `config.log' for more details
453:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib
454:info:configure Exit code: 1
455:error:configure Failed to configure R: consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/config.log
456:error:configure Failed to configure R: configure failure: command execution failed
457:debug:configure Error code: NONE
458:debug:configure Backtrace: configure failure: command execution failed
459:debug:configure     while executing
460:debug:configure "$procedure $targetname"
461:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/main.log for details.
462version:1
463:debug:main Starting logging for R @4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11
464:debug:sysinfo macOS 11.6.7 (darwin/20.6.0) arch i386
465:debug:sysinfo MacPorts 2.7.2
466:debug:sysinfo Xcode 13.2.1
467:debug:sysinfo SDK 11
468:debug:sysinfo MACOSX_DEPLOYMENT_TARGET: 11.0
469:msg:main --->  Computing dependencies for R:info:main .:debug:main R has no conflicts
470:debug:main Searching for dependency: pkgconfig
471:debug:main Found Dependency: receipt exists for pkgconfig
472:debug:main Searching for dependency: gcc12
473:debug:main Found Dependency: receipt exists for gcc12
474:debug:main Searching for dependency: clang-14
475:debug:main Found Dependency: receipt exists for clang-14
476:debug:main Searching for dependency: readline
477:debug:main Found Dependency: receipt exists for readline
478:debug:main Searching for dependency: icu
479:debug:main Found Dependency: receipt exists for icu
480:debug:main Searching for dependency: libiconv
481:debug:main Found Dependency: receipt exists for libiconv
482:debug:main Searching for dependency: zlib
483:debug:main Found Dependency: receipt exists for zlib
484:debug:main Searching for dependency: pcre
485:debug:main Found Dependency: receipt exists for pcre
486:debug:main Searching for dependency: pcre2
487:debug:main Found Dependency: receipt exists for pcre2
488:debug:main Searching for dependency: libjpeg-turbo
489:debug:main Found Dependency: receipt exists for libjpeg-turbo
490:debug:main Searching for dependency: tiff
491:debug:main Found Dependency: receipt exists for tiff
492:debug:main Searching for dependency: libpng
493:debug:main Found Dependency: receipt exists for libpng
494:debug:main Searching for dependency: curl
495:debug:main Found Dependency: receipt exists for curl
496:debug:main Searching for dependency: less
497:debug:main Found Dependency: receipt exists for less
498:debug:main Searching for dependency: texinfo
499:debug:main Found Dependency: receipt exists for texinfo
500:debug:main Searching for dependency: bzip2
501:debug:main Found Dependency: receipt exists for bzip2
502:debug:main Searching for dependency: gzip
503:debug:main Found Dependency: receipt exists for gzip
504:debug:main Searching for dependency: zip
505:debug:main Found Dependency: receipt exists for zip
506:debug:main Searching for dependency: unzip
507:debug:main Found Dependency: receipt exists for unzip
508:debug:main Searching for dependency: gnutar
509:debug:main Found Dependency: receipt exists for gnutar
510:debug:main Searching for dependency: xz
511:debug:main Found Dependency: receipt exists for xz
512:debug:main Searching for dependency: libgcc
513:debug:main Found Dependency: receipt exists for libgcc
514:debug:main Searching for dependency: cairo
515:debug:main Found Dependency: receipt exists for cairo
516:debug:main Searching for dependency: pango
517:debug:main Found Dependency: receipt exists for pango
518:debug:main Searching for dependency: glib2
519:debug:main Found Dependency: receipt exists for glib2
520:debug:main Searching for dependency: freetype
521:debug:main Found Dependency: receipt exists for freetype
522:debug:main Searching for dependency: fontconfig
523:debug:main Found Dependency: receipt exists for fontconfig
524:debug:main Searching for dependency: gettext-runtime
525:debug:main Found Dependency: receipt exists for gettext-runtime
526:debug:main Searching for dependency: xorg-libsm
527:debug:main Found Dependency: receipt exists for xorg-libsm
528:debug:main Searching for dependency: xorg-libice
529:debug:main Found Dependency: receipt exists for xorg-libice
530:debug:main Searching for dependency: xorg-libX11
531:debug:main Found Dependency: receipt exists for xorg-libX11
532:debug:main Searching for dependency: xorg-libXt
533:debug:main Found Dependency: receipt exists for xorg-libXt
534:debug:main Searching for dependency: libomp
535:debug:main Found Dependency: receipt exists for libomp
536:debug:main Executing org.macports.main (R)
537:debug:main dropping privileges: euid changed to 506, egid changed to 505.
538:debug:archivefetch archivefetch phase started at Fri Jul 22 15:57:22 EDT 2022
539:msg:archivefetch --->  Fetching archive for R
540:debug:archivefetch Executing proc-pre-org.macports.archivefetch-archivefetch-0
541:debug:archivefetch Executing org.macports.archivefetch (R)
542:debug:archivefetch euid/egid changed to: 0/0
543:debug:archivefetch chowned /opt/local/var/macports/incoming to macports
544:debug:archivefetch euid/egid changed to: 506/505
545:info:archivefetch --->  R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified
546:msg:archivefetch --->  Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://packages.macports.org/R
547:debug:archivefetch Fetching archive failed: The requested URL returned error: 404
548:msg:archivefetch --->  Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://ywg.ca.packages.macports.org/mirror/macports/packages/R
549:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
550:msg:archivefetch --->  Attempting to fetch R-4.2.1_0+accelerate+cairo+gcc12+openmp+recommended+x11.darwin_20.x86_64.tbz2 from https://mse.uk.packages.macports.org/R
551:debug:archivefetch Fetching archive failed: The requested URL returned error: 404 Not Found
552:debug:archivefetch Privilege de-escalation not attempted as not running as root.
553:debug:archivefetch Skipping completed org.macports.fetch (R)
554:debug:archivefetch Privilege de-escalation not attempted as not running as root.
555:debug:archivefetch Skipping completed org.macports.checksum (R)
556:debug:archivefetch Privilege de-escalation not attempted as not running as root.
557:debug:archivefetch Skipping completed org.macports.extract (R)
558:debug:archivefetch Privilege de-escalation not attempted as not running as root.
559:debug:archivefetch Skipping completed org.macports.patch (R)
560:debug:archivefetch Privilege de-escalation not attempted as not running as root.
561:debug:configure configure phase started at Fri Jul 22 15:57:27 EDT 2022
562:notice:configure --->  Configuring R
563:debug:configure Preferred compilers: macports-clang-14 macports-clang-13 macports-clang-12 macports-clang-11 macports-clang-10 macports-clang-9.0
564:debug:configure Using compiler 'MacPorts Clang 14'
565:debug:configure Executing proc-pre-org.macports.configure-configure-0
566:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14
567:debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo'
568:debug:configure cairo is installed with the following variants: +quartz+x11
569:debug:configure   required: x11, forbidden:
570:debug:configure   accepted
571:debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango'
572:debug:configure pango is installed with the following variants: +quartz+x11
573:debug:configure   required: x11, forbidden:
574:debug:configure   accepted
575:debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk
576:debug:configure Executing proc-pre-org.macports.configure-configure-1
577:debug:configure compilers.enforce_c list:
578:debug:configure compilers.enforce_fortran list:
579:debug:configure compilers.enforce_some_fortran list:
580:debug:configure Executing proc-pre-org.macports.configure-configure-2
581:debug:configure Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: readline icu libiconv zlib pcre pcre2 libjpeg-turbo tiff libpng curl less texinfo bzip2 gzip zip unzip gnutar xz libgcc cairo pango glib2 freetype fontconfig gettext-runtime xorg-libsm xorg-libice xorg-libX11 xorg-libXt libomp pkgconfig gcc12 clang-14
582:debug:configure Checking cairo for active variants for depspec 'path:lib/pkgconfig/cairo.pc:cairo'
583:debug:configure cairo is installed with the following variants: +quartz+x11
584:debug:configure   required: x11, forbidden:
585:debug:configure   accepted
586:debug:configure Checking pango for active variants for depspec 'path:lib/pkgconfig/pango.pc:pango'
587:debug:configure pango is installed with the following variants: +quartz+x11
588:debug:configure   required: x11, forbidden:
589:debug:configure   accepted
590:debug:configure Ignoring active_variants requirement for tk because source-type install only considers depends_fetch depends_extract depends_lib depends_build depends_run and those do not contain tk
591:debug:configure Executing org.macports.configure (R)
592:debug:configure Environment:
593:debug:configure CC='/opt/local/bin/clang-mp-14'
594:debug:configure CC_PRINT_OPTIONS='YES'
595:debug:configure CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/.CC_PRINT_OPTIONS'
596:debug:configure CFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
597:debug:configure CPATH='/opt/local/include'
598:debug:configure CPPFLAGS='-I/opt/local/include -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk'
599:debug:configure CXX='/opt/local/bin/clang++-mp-14'
600:debug:configure CXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
601:debug:configure DEVELOPER_DIR='/Library/Developer/CommandLineTools'
602:debug:configure F77='/opt/local/bin/gfortran-mp-12'
603:debug:configure F90FLAGS='-pipe -Os -m64'
604:debug:configure FC='/opt/local/bin/gfortran-mp-12'
605:debug:configure FCFLAGS='-pipe -Os -m64'
606:debug:configure FFLAGS='-pipe -Os -m64'
607:debug:configure INSTALL='/usr/bin/install -c'
608:debug:configure LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath /opt/local/lib/libgcc -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
609:debug:configure LIBRARY_PATH='/opt/local/lib'
610:debug:configure MACOSX_DEPLOYMENT_TARGET='11.0'
611:debug:configure OBJC='/opt/local/bin/clang-mp-14'
612:debug:configure OBJCFLAGS='-pipe -Os -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
613:debug:configure OBJCXX='/opt/local/bin/clang++-mp-14'
614:debug:configure OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64'
615:debug:configure R_BROWSER='/usr/bin/open'
616:debug:configure R_PDFVIEWER='/usr/bin/open'
617:debug:configure SDKROOT='/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk'
618:debug:configure ac_cv_path_PDFLATEX=''
619:debug:configure ac_cv_path_PDFTEX=''
620:debug:configure ac_cv_path_TEX=''
621:info:configure Executing:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib
622:debug:configure system:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib
623:info:configure checking build system type... x86_64-apple-darwin20.6.0
624:info:configure checking host system type... x86_64-apple-darwin20.6.0
625:info:configure loading site script './config.site'
626:info:configure loading build-specific script './config.site'
627:info:configure checking for pwd... /bin/pwd
628:info:configure checking whether builddir is srcdir... yes
629:info:configure checking whether ln -s works... yes
630:info:configure checking for ar... ar
631:info:configure checking for a BSD-compatible install... /usr/bin/install -c
632:info:configure checking for sed... /usr/bin/sed
633:info:configure checking for which... /usr/bin/which
634:info:configure checking for less... /opt/local/bin/less
635:info:configure checking for gtar... /opt/local/bin/gtar
636:info:configure checking for tex... (cached) no
637:info:configure checking for pdftex... (cached) no
638:info:configure configure: WARNING: you cannot build PDF versions of the R manuals
639:info:configure checking for pdflatex... (cached) no
640:info:configure configure: WARNING: you cannot build PDF versions of vignettes and help pages
641:info:configure checking for makeindex... /opt/local/bin/makeindex
642:info:configure checking for texi2any... /opt/local/bin/texi2any
643:info:configure checking whether texi2any version is at least 5.1... yes
644:info:configure checking for ginstall-info... no
645:info:configure checking for install-info... /opt/local/bin/install-info
646:info:configure checking for texi2dvi... /opt/local/bin/texi2dvi
647:info:configure checking for kpsewhich... /opt/local/bin/kpsewhich
648:info:configure checking for latex inconsolata package... missing
649:info:configure configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally
650:info:configure checking for unzip... /opt/local/bin/unzip
651:info:configure checking for zip... /opt/local/bin/zip
652:info:configure checking for gzip... /opt/local/bin/gzip
653:info:configure checking for bzip2... /opt/local/bin/bzip2
654:info:configure using default browser ... /usr/bin/open
655:info:configure checking for /usr/bin/open... /usr/bin/open
656:info:configure checking for working aclocal... found
657:info:configure checking for working autoconf... found
658:info:configure checking for working autoheader... found
659:info:configure checking for bison... bison -y
660:info:configure checking for notangle... false
661:info:configure checking for realpath... false
662:info:configure checking for pkg-config... /opt/local/bin/pkg-config
663:info:configure checking for gcc... /opt/local/bin/clang-mp-14
664:info:configure checking whether the C compiler works... yes
665:info:configure checking for C compiler default output file name... a.out
666:info:configure checking for suffix of executables...
667:info:configure checking whether we are cross compiling... no
668:info:configure checking for suffix of object files... o
669:info:configure checking whether the compiler supports GNU C... yes
670:info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes
671:info:configure checking for /opt/local/bin/clang-mp-14 option to enable C11 features... none needed
672:info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E
673:info:configure checking for grep that handles long lines and -e... /opt/local/bin/ggrep
674:info:configure checking for egrep... /opt/local/bin/ggrep -E
675:info:configure checking whether /opt/local/bin/clang-mp-14 needs -traditional... no
676:info:configure checking for stdio.h... yes
677:info:configure checking for stdlib.h... yes
678:info:configure checking for string.h... yes
679:info:configure checking for inttypes.h... yes
680:info:configure checking for stdint.h... yes
681:info:configure checking for strings.h... yes
682:info:configure checking for sys/stat.h... yes
683:info:configure checking for sys/types.h... yes
684:info:configure checking for unistd.h... yes
685:info:configure checking for wchar.h... yes
686:info:configure checking for minix/config.h... no
687:info:configure checking for sys/time.h... yes
688:info:configure checking for sys/param.h... yes
689:info:configure checking whether it is safe to define __EXTENSIONS__... yes
690:info:configure checking whether _XOPEN_SOURCE should be defined... no
691:info:configure checking how to run the C preprocessor... /opt/local/bin/clang-mp-14 -E
692:info:configure looking for a modern Fortran compiler
693:info:configure checking whether the compiler supports GNU Fortran... no
694:info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -g... no
695:info:configure checking whether the compiler supports GNU C++... yes
696:info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -g... yes
697:info:configure checking for /opt/local/bin/clang++-mp-14 option to enable C++11 features... none needed
698:info:configure checking whether /opt/local/bin/clang++-mp-14 -pipe -Os -stdlib=libc++ -isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX11.1.sdk -arch x86_64 can compile C++ code... yes
699:info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E
700:info:configure checking whether __attribute__((visibility())) is supported... no
701:info:configure checking whether /opt/local/bin/clang-mp-14 accepts -fvisibility... yes
702:info:configure checking whether /opt/local/bin/clang++-mp-14 accepts -fvisibility... yes
703:info:configure checking whether /opt/local/bin/gfortran-mp-12 accepts -fvisibility... no
704:info:configure checking whether the compiler supports GNU Objective C... yes
705:info:configure checking whether /opt/local/bin/clang-mp-14 accepts -g... yes
706:info:configure checking whether /opt/local/bin/clang++-mp-14 can compile ObjC++... yes
707:info:configure checking for Objective C++ compiler... /opt/local/bin/clang++-mp-14
708:info:configure checking how to print strings... printf
709:info:configure checking for a sed that does not truncate output... (cached) /usr/bin/sed
710:info:configure checking for fgrep... /opt/local/bin/ggrep -F
711:info:configure checking for ld used by /opt/local/bin/clang-mp-14... /opt/local/libexec/llvm-14/bin/ld
712:info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no
713:info:configure checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm -B
714:info:configure checking the name lister (/opt/local/bin/nm -B) interface... BSD nm
715:info:configure checking the maximum length of command line arguments... 786432
716:info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to x86_64-apple-darwin20.6.0 format... func_convert_file_noop
717:info:configure checking how to convert x86_64-apple-darwin20.6.0 file names to toolchain format... func_convert_file_noop
718:info:configure checking for /opt/local/libexec/llvm-14/bin/ld option to reload object files... -r
719:info:configure checking for objdump... objdump
720:info:configure checking how to recognize dependent libraries... pass_all
721:info:configure checking for dlltool... no
722:info:configure checking how to associate runtime and link libraries... printf %s\n
723:info:configure checking for archiver @FILE support... no
724:info:configure checking for strip... strip
725:info:configure checking for ranlib... ranlib
726:info:configure checking for gawk... gawk
727:info:configure checking command to parse /opt/local/bin/nm -B output from /opt/local/bin/clang-mp-14 object... ok
728:info:configure checking for sysroot... no
729:info:configure checking for a working dd... /bin/dd
730:info:configure checking how to truncate binary pipes... /bin/dd bs=4096 count=1
731:info:configure checking for mt... no
732:info:configure checking if : is a manifest tool... no
733:info:configure checking for dsymutil... dsymutil
734:info:configure checking for nmedit... nmedit
735:info:configure checking for lipo... lipo
736:info:configure checking for otool... otool
737:info:configure checking for otool64... no
738:info:configure checking for -single_module linker flag... yes
739:info:configure checking for -exported_symbols_list linker flag... yes
740:info:configure checking for -force_load linker flag... yes
741:info:configure checking for dlfcn.h... yes
742:info:configure checking for objdir... .libs
743:info:configure checking if /opt/local/bin/clang-mp-14 supports -fno-rtti -fno-exceptions... yes
744:info:configure checking for /opt/local/bin/clang-mp-14 option to produce PIC... -fno-common -DPIC
745:info:configure checking if /opt/local/bin/clang-mp-14 PIC flag -fno-common -DPIC works... yes
746:info:configure checking if /opt/local/bin/clang-mp-14 static flag -static works... no
747:info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... yes
748:info:configure checking if /opt/local/bin/clang-mp-14 supports -c -o file.o... (cached) yes
749:info:configure checking whether the /opt/local/bin/clang-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes
750:info:configure checking dynamic linker characteristics... darwin20.6.0 dyld
751:info:configure checking how to hardcode library paths into programs... immediate
752:info:configure checking whether stripping libraries is possible... yes
753:info:configure checking if libtool supports shared libraries... yes
754:info:configure checking whether to build shared libraries... yes
755:info:configure checking whether to build static libraries... no
756:info:configure checking how to run the C++ preprocessor... /opt/local/bin/clang++-mp-14 -E
757:info:configure checking for ld used by /opt/local/bin/clang++-mp-14... /opt/local/libexec/llvm-14/bin/ld
758:info:configure checking if the linker (/opt/local/libexec/llvm-14/bin/ld) is GNU ld... no
759:info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes
760:info:configure checking for /opt/local/bin/clang++-mp-14 option to produce PIC... -fno-common -DPIC
761:info:configure checking if /opt/local/bin/clang++-mp-14 PIC flag -fno-common -DPIC works... yes
762:info:configure checking if /opt/local/bin/clang++-mp-14 static flag -static works... no
763:info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... yes
764:info:configure checking if /opt/local/bin/clang++-mp-14 supports -c -o file.o... (cached) yes
765:info:configure checking whether the /opt/local/bin/clang++-mp-14 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... yes
766:info:configure checking dynamic linker characteristics... darwin20.6.0 dyld
767:info:configure checking how to hardcode library paths into programs... immediate
768:info:configure checking if libtool supports shared libraries... yes
769:info:configure checking whether to build shared libraries... yes
770:info:configure checking whether to build static libraries... no
771:info:configure libtool.m4: error: problem compiling FC test program
772:info:configure checking for /opt/local/bin/gfortran-mp-12 option to produce PIC... -fno-common
773:info:configure checking if /opt/local/bin/gfortran-mp-12 PIC flag -fno-common works... no
774:info:configure checking if /opt/local/bin/gfortran-mp-12 static flag  works... no
775:info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... no
776:info:configure checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... (cached) no
777:info:configure checking whether the /opt/local/bin/gfortran-mp-12 linker (/opt/local/libexec/llvm-14/bin/ld) supports shared libraries... no
778:info:configure checking dynamic linker characteristics... darwin20.6.0 dyld
779:info:configure checking how to hardcode library paths into programs... immediate
780:info:configure checking for sin in -lm... yes
781:info:configure checking for dlopen in -ldl... yes
782:info:configure checking for readline/history.h... yes
783:info:configure checking for readline/readline.h... yes
784:info:configure checking for rl_callback_read_char in -lreadline... yes
785:info:configure checking for history_truncate_file... yes
786:info:configure checking for tilde_expand_word... yes
787:info:configure checking whether rl_completion_matches exists and is declared... yes
788:info:configure checking whether rl_resize_terminal exists and is declared... yes
789:info:configure checking whether rl_sort_completion_matches exists and is declared... yes
790:info:configure checking for dirent.h that defines DIR... yes
791:info:configure checking for library containing opendir... none required
792:info:configure checking for sys/wait.h that is POSIX.1 compatible... yes
793:info:configure checking for dlfcn.h... (cached) yes
794:info:configure checking for fcntl.h... yes
795:info:configure checking for glob.h... yes
796:info:configure checking for grp.h... yes
797:info:configure checking for pwd.h... yes
798:info:configure checking for sched.h... yes
799:info:configure checking for strings.h... (cached) yes
800:info:configure checking for sys/resource.h... yes
801:info:configure checking for sys/select.h... yes
802:info:configure checking for sys/socket.h... yes
803:info:configure checking for sys/stat.h... (cached) yes
804:info:configure checking for sys/time.h... (cached) yes
805:info:configure checking for sys/times.h... yes
806:info:configure checking for sys/utsname.h... yes
807:info:configure checking for unistd.h... (cached) yes
808:info:configure checking for utime.h... yes
809:info:configure checking for arpa/inet.h... yes
810:info:configure checking for elf.h... no
811:info:configure checking for features.h... no
812:info:configure checking for floatingpoint.h... no
813:info:configure checking for langinfo.h... yes
814:info:configure checking for netdb.h... yes
815:info:configure checking for netinet/in.h... yes
816:info:configure checking for sys/param.h... (cached) yes
817:info:configure checking for stdalign.h... yes
818:info:configure checking for errno.h... yes
819:info:configure checking for inttypes.h... (cached) yes
820:info:configure checking for limits.h... yes
821:info:configure checking for locale.h... yes
822:info:configure checking for stdarg.h... yes
823:info:configure checking for stdbool.h... yes
824:info:configure checking for stdint.h... (cached) yes
825:info:configure checking for string.h... (cached) yes
826:info:configure checking for /opt/local/bin/clang-mp-14 options needed to detect all undeclared functions... -fno-builtin
827:info:configure checking whether setjmp.h is POSIX.1 compatible... yes
828:info:configure checking whether sigsetjmp is declared... yes
829:info:configure checking whether siglongjmp is declared... yes
830:info:configure checking for GNU C library with version >= 2... no
831:info:configure checking for uint64_t... yes
832:info:configure checking for int64_t... yes
833:info:configure checking for int_fast64_t... yes
834:info:configure checking for pid_t... yes
835:info:configure checking for size_t... yes
836:info:configure checking whether SIZE_MAX is declared... yes
837:info:configure checking for blkcnt_t... yes
838:info:configure checking for type of socket length... socklen_t *
839:info:configure checking for stack_t... yes
840:info:configure checking for intptr_t... yes
841:info:configure checking for uintptr_t... yes
842:info:configure checking whether byte ordering is bigendian... no
843:info:configure checking for an ANSI C-conforming const... yes
844:info:configure checking for inline... inline
845:info:configure checking size of int... 4
846:info:configure checking size of long... 8
847:info:configure checking size of long long... 8
848:info:configure checking size of double... 8
849:info:configure checking size of size_t... 8
850:info:configure checking for C stack direction... down
851:info:configure checking size of long double... 16
852:info:configure checking whether we can compute C Make dependencies... yes, using $(CC) -MM
853:info:configure checking whether /opt/local/bin/clang-mp-14 supports -c -o FILE.lo... yes
854:info:configure checking for /opt/local/bin/clang-mp-14 option to support OpenMP... -fopenmp
855:info:configure checking how to get verbose linking output from /opt/local/bin/gfortran-mp-12... configure: WARNING: compilation failed
856:info:configure checking for Fortran libraries of /opt/local/bin/gfortran-mp-12...
857:info:configure checking how to get verbose linking output from /opt/local/bin/clang-mp-14... configure: WARNING: cannot determine how to obtain linking information from /opt/local/bin/clang-mp-14
858:info:configure checking for C libraries of /opt/local/bin/clang-mp-14...
859:info:configure checking for dummy main to link with Fortran libraries... none
860:info:configure checking for Fortran name-mangling scheme... configure: error: in `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1':
861:info:configure configure: error: cannot compile a simple Fortran program
862:info:configure See `config.log' for more details
863:info:configure Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1" && ./configure --prefix=/opt/local/Library/Frameworks --enable-openmp --enable-R-framework --enable-memory-profiling --enable-R-shlib --enable-BLAS-shlib --without-tcltk --with-cairo --disable-java --with-included-gettext --with-blas="-framework Accelerate" --with-lapack --with-recommended-packages --with-x --x-include=/opt/local/include/X11 --x-lib=/opt/local/lib
864:info:configure Exit code: 1
865:error:configure Failed to configure R: consult /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/work/R-4.2.1/config.log
866:error:configure Failed to configure R: configure failure: command execution failed
867:debug:configure Error code: NONE
868:debug:configure Backtrace: configure failure: command execution failed
869:debug:configure     while executing
870:debug:configure "$procedure $targetname"
871:error:configure See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_R/R/main.log for details.