Problems installing atlas

[phil.massey@…]

I'm attempting to install "atlas" on a new Mac Pro running 10.9.1. Here is what happens: [frodo2:~] lmi% sudo port install atlas ---> Computing dependencies for atlas ---> Fetching archive for atlas ---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2 from ​http://packages.macports.org/atlas ---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2 from ​http://lil.fr.packages.macports.org/atlas ---> Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2 from ​http://nue.de.packages.macports.org/macports/packages/atlas ---> Fetching distfiles for atlas ---> Verifying checksums for atlas ---> Extracting atlas ---> Applying patches to atlas ---> Configuring atlas Selected C compiler: /opt/local/bin/clang-mp-3.3 Selected F77 compiler: gfortran48 ---> Building atlas Error: org.macports.build for port atlas returned: command execution failed Please see the log file for port atlas for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log

To report a bug, follow the instructions in the guide:

​http://guide.macports.org/#project.tickets

Error: Processing of port atlas failed

Here is the log:

version:1 :debug:main epoch: in tree: 1 installed: 1 :debug:main clang-3.3 3.3_2 exists in the ports tree :debug:main clang-3.3 3.3_2 +analyzer+python27 is the latest installed :debug:main clang-3.3 3.3_2 +analyzer+python27 is active :debug:main Merging existing variants '+analyzer+python27' into variants :debug:main new fully merged portvariants: analyzer + python27 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.3 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant python27 provides python27 :debug:main Executing variant analyzer provides analyzer :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! clang-3.3 3.3_2 >= clang-3.3 3.3_2 :debug:main epoch: in tree: 1 installed: 1 :debug:main llvm-3.3 3.3_1 exists in the ports tree :debug:main llvm-3.3 3.3_1 is the latest installed :debug:main llvm-3.3 3.3_1 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.3 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! llvm-3.3 3.3_1 >= llvm-3.3 3.3_1 :debug:main epoch: in tree: 0 installed: 0 :debug:main libffi 3.0.13_0 exists in the ports tree :debug:main libffi 3.0.13_0 is the latest installed :debug:main libffi 3.0.13_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libffi 3.0.13_0 >= libffi 3.0.13_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main perl5 5.12.4_0 exists in the ports tree :debug:main perl5 5.12.4_0 +perl5_16 is the latest installed :debug:main perl5 5.12.4_0 +perl5_16 is active :debug:main Merging existing variants '+perl5_16' into variants :debug:main new fully merged portvariants: perl5_16 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main universal_variant is false, so not adding the default universal variant :debug:main Executing variant perl5_16 provides perl5_16 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! perl5 5.12.4_0 >= perl5 5.12.4_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main perl5.16 5.16.1_3 exists in the ports tree :debug:main perl5.16 5.16.1_3 is the latest installed :debug:main perl5.16 5.16.1_3 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5.16 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! perl5.16 5.16.1_3 >= perl5.16 5.16.1_3 :debug:main epoch: in tree: 0 installed: 0 :debug:main gdbm 1.11_0 exists in the ports tree :debug:main gdbm 1.11_0 is the latest installed :debug:main gdbm 1.11_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/gdbm :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gdbm 1.11_0 >= gdbm 1.11_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main gettext 0.18.3.2_0 exists in the ports tree :debug:main gettext 0.18.3.2_0 is the latest installed :debug:main gettext 0.18.3.2_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main compiler clang 500.2.79 not blacklisted because it doesn't match {clang < 211.10.1} :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! gettext 0.18.3.2_0 >= gettext 0.18.3.2_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main expat 2.1.0_0 exists in the ports tree :debug:main expat 2.1.0_0 is the latest installed :debug:main expat 2.1.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main libiconv 1.14_0 exists in the ports tree :debug:main libiconv 1.14_0 is the latest installed :debug:main libiconv 1.14_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main ncurses 5.9_2 exists in the ports tree :debug:main ncurses 5.9_2 is the latest installed :debug:main ncurses 5.9_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main llvm_select 0.2_0 exists in the ports tree :debug:main llvm_select 0.2_0 is the latest installed :debug:main llvm_select 0.2_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! llvm_select 0.2_0 >= llvm_select 0.2_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main clang_select 0.1_0 exists in the ports tree :debug:main clang_select 0.1_0 is the latest installed :debug:main clang_select 0.1_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/clang_select :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! clang_select 0.1_0 >= clang_select 0.1_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main ld64 136_2 exists in the ports tree :debug:main ld64 136_2 +llvm33 is the latest installed :debug:main ld64 136_2 +llvm33 is active :debug:main Merging existing variants '+llvm33' into variants :debug:main new fully merged portvariants: llvm33 + :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Executing variant llvm33 provides llvm33 :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! ld64 136_2 >= ld64 136_2 :debug:main epoch: in tree: 2 installed: 2 :debug:main python27 2.7.6_0 exists in the ports tree :debug:main python27 2.7.6_0 is the latest installed :debug:main python27 2.7.6_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! python27 2.7.6_0 >= python27 2.7.6_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main zlib 1.2.8_0 exists in the ports tree :debug:main zlib 1.2.8_0 is the latest installed :debug:main zlib 1.2.8_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0 :debug:main epoch: in tree: 1 installed: 1 :debug:main openssl 1.0.1f_0 exists in the ports tree :debug:main openssl 1.0.1f_0 is the latest installed :debug:main openssl 1.0.1f_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! openssl 1.0.1f_0 >= openssl 1.0.1f_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main sqlite3 3.8.3_1 exists in the ports tree :debug:main sqlite3 3.8.3_1 is the latest installed :debug:main sqlite3 3.8.3_1 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main adding the default universal variant :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! sqlite3 3.8.3_1 >= sqlite3 3.8.3_1 :debug:main epoch: in tree: 20090923 installed: 20090923 :debug:main libedit 20121213-3.0_0 exists in the ports tree :debug:main libedit 20121213-3.0_0 is the latest installed :debug:main libedit 20121213-3.0_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main db46 4.6.21_9 exists in the ports tree :debug:main db46 4.6.21_9 is the latest installed :debug:main db46 4.6.21_9 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db46 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! db46 4.6.21_9 >= db46 4.6.21_9 :debug:main epoch: in tree: 0 installed: 0 :debug:main db_select 0.1_2 exists in the ports tree :debug:main db_select 0.1_2 is the latest installed :debug:main db_select 0.1_2 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/db_select :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! db_select 0.1_2 >= db_select 0.1_2 :debug:main epoch: in tree: 0 installed: 0 :debug:main bzip2 1.0.6_0 exists in the ports tree :debug:main bzip2 1.0.6_0 is the latest installed :debug:main bzip2 1.0.6_0 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2 :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf :debug:main universal variant already exists, so not adding the default one :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0 :debug:main epoch: in tree: 0 installed: 0 :debug:main python_select 0.3_3 exists in the ports tree :debug:main python_select 0.3_3 is the latest installed :debug:main python_select 0.3_3 is active :debug:main Merging existing variants into variants :debug:main new fully merged portvariants: :debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select :debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386 :debug:main universal_variant is false, so not adding the default universal variant :debug:main Running callback portconfigure::add_automatic_compiler_dependencies :debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies :debug:main Running callback portbuild::add_automatic_buildsystem_dependencies :debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies :debug:main No need to upgrade! python_select 0.3_3 >= python_select 0.3_3 :msg:main ---> Computing dependencies for atlas:info:main .:debug:main atlas has no conflicts :debug:main Searching for dependency: clang-3.3 :debug:main Found Dependency: receipt exists for clang-3.3 :msg:main :debug:main Executing org.macports.main (atlas) :debug:main changing euid/egid - current euid: 0 - current egid: 0 :debug:main egid changed to: 501 :debug:main euid changed to: 502 :debug:main Skipping completed org.macports.archivefetch (atlas) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.fetch (atlas) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.checksum (atlas) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.extract (atlas) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.patch (atlas) :debug:main Privilege de-escalation not attempted as not running as root. :debug:main Skipping completed org.macports.configure (atlas) :debug:main Privilege de-escalation not attempted as not running as root. :debug:build build phase started at Fri Feb 7 15:46:50 MST 2014 :notice:build ---> Building atlas :debug:build Executing org.macports.build (atlas) :debug:build port disallows a parallel build :debug:build Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.9' CC='/usr/bin/clang' CXX='/usr/bin/clang++' :debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build' :debug:build Executing command line: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build :info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top build :info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build cd bin/ ; /Applications/Xcode.app/Contents/Developer/usr/bin/make xatlas_build :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build make[2]: `xatlas_build' is up to date. :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1 :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build make[2]: * No rule to make target /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//CONFIG/ARCHS/UNKNOWNx8664AVX.tar.bz2', needed by /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/ARCHS/UNKNOWNx8664AVX'. Stop. :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -s ATL_buildinfo.o :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil ; /Applications/Xcode.app/Contents/Developer/usr/bin/make lib :info:build make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo ; /Applications/Xcode.app/Contents/Developer/usr/bin/make /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h :info:build make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo' :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo/xsyssum s /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h :info:build :info:build Read in L1 Cache size as = 32KB. :info:build make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make RunMulAdd pre=s :info:build make[6]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo' :info:build ./xmasrch -p s -o res/sMULADD :info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin/ATLrun.sh: line 4: 44893 Abort trap: 6 $atldir/$* :info:build make[7]: * [xsma] Error 134 :info:build Assertion failed: (!system(ln)), function matime, file /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..tune/sysinfo/masrch.c, line 108. :info:build Finding how many mflops required to get .025 second timings: :info:build 1: 2.000000e-04 :info:build 2: 3.000000e-04 :info:build 4: 6.000000e-04 :info:build 8: 1.000000e-03 :info:build 16: 3.000000e-03 :info:build 32: 5.000000e-03 :info:build 64: 1.000000e-02 :info:build 128: 2.000000e-02 :info:build 256: 4.000000e-02 :info:build FORCE MFLOP=256, TIME=4.000000e-02 :info:build :info:build FINDING USABLE NREG: :info:build 2: 1553.51 :info:build 4: 3101.17 :info:build 8: 6205.83 :info:build 16: 6425.23 :info:build 32: 7697.11 :info:build 64: 7708.87 :info:build 128: 6866.67 :info:build :info:build 96: 7558.92 :info:build make[6]: * [RunMulAdd] Abort trap: 6 :info:build make[6]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo' :info:build make[5]: * [res/sMULADD] Error 2 :info:build make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo' :info:build Assertion failed: (system(fnam) == 0), function getfpinfo0, file /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..tune/sysinfo/GetSysSum.c, line 69. :info:build make[4]: * opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h Abort trap: 6 :info:build make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo' :info:build make[3]: * opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h Error 2 :info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil' :info:build make[2]: * [IStage1] Error 2 :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build ERROR 621 DURING CACHESIZE SEARCH!!. CHECK INSTALL_LOG/Stage1.log FOR DETAILS. :info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build ; /Applications/Xcode.app/Contents/Developer/usr/bin/make error_report :info:build make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top error_report :info:build make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG :info:build /opt/local/bin/clang-mp-3.3 -v 2>&1 >> bin/INSTALL_LOG/ERROR.LOG :info:build clang version 3.3 (tags/RELEASE_33/final) :info:build Target: x86_64-apple-darwin13.0.3 :info:build Thread model: posix :info:build /opt/local/bin/clang-mp-3.3 -V 2>&1 >> bin/INSTALL_LOG/ERROR.LOG :info:build clang: error: argument to '-V' is missing (expected 1 value) :info:build clang: error: no input files :info:build make[4]: [error_report] Error 1 (ignored) :info:build /opt/local/bin/clang-mp-3.3 --version 2>&1 >> bin/INSTALL_LOG/ERROR.LOG :info:build tar cf error_UNKNOWNx8664AVX.tar Make.inc bin/INSTALL_LOG/* :info:build bzip2 error_UNKNOWNx8664AVX.tar :info:build bzip2: Output file error_UNKNOWNx8664AVX.tar.bz2 already exists. :info:build make[4]: * [error_report] Error 1 :info:build make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build make[3]: * [error_report] Error 2 :info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build make[2]: * [error_report] Error 2 :info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin' :info:build cat: ../../CONFIG/error.txt: No such file or directory :info:build cat: ../../CONFIG/error.txt: No such file or directory :info:build :info:build :info:build BEGIN STAGE 1-0-0: SYSTEM PROBE/AUX COMPILE at 15:46 :info:build make[1]: * [build] Error 255 :info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build make: * [build] Error 2 :info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build' :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build :info:build Exit code: 2 :error:build org.macports.build for port atlas returned: command execution failed :debug:build Error code: CHILDSTATUS 44769 2 :debug:build Backtrace: command execution failed

while executing

"system -nice 0 $fullcmdstring"

("eval" body line 1) invoked from within

"eval system $notty $nice \$fullcmdstring"

invoked from within

"command_exec build"

(procedure "portbuild::build_main" line 8) invoked from within

"$procedure $targetname" :info:build Warning: targets not executed for atlas: org.macports.activate org.macports.build org.macports.destroot org.macports.install :notice:build Please see the log file for port atlas for details:

/opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log