Problems installing atlas

[phil.massey@…]

I'm attempting to install "atlas" on a new Mac Pro running 10.9.1. Here is what happens:

[frodo2:~] lmi% sudo port install atlas
--->  Computing dependencies for atlas
--->  Fetching archive for atlas
--->  Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2 from http://packages.macports.org/atlas
--->  Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2 from http://lil.fr.packages.macports.org/atlas
--->  Attempting to fetch atlas-3.10.1_5+mpclang33.darwin_13.x86_64.tbz2 from http://nue.de.packages.macports.org/macports/packages/atlas
--->  Fetching distfiles for atlas
--->  Verifying checksums for atlas
--->  Extracting atlas
--->  Applying patches to atlas
--->  Configuring atlas
Selected C compiler: /opt/local/bin/clang-mp-3.3
Selected F77 compiler: gfortran48
--->  Building atlas
Error: org.macports.build for port atlas returned: command execution failed
Please see the log file for port atlas for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port atlas failed

Here is the log:

version:1
:debug:main epoch: in tree: 1 installed: 1
:debug:main clang-3.3 3.3_2 exists in the ports tree
:debug:main clang-3.3 3.3_2 +analyzer+python27 is the latest installed
:debug:main clang-3.3 3.3_2 +analyzer+python27 is active
:debug:main Merging existing variants '+analyzer+python27' into variants
:debug:main new fully merged portvariants: analyzer + python27 +
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.3
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Executing variant python27 provides python27
:debug:main Executing variant analyzer provides analyzer
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! clang-3.3 3.3_2 >= clang-3.3 3.3_2
:debug:main epoch: in tree: 1 installed: 1
:debug:main llvm-3.3 3.3_1 exists in the ports tree
:debug:main llvm-3.3 3.3_1  is the latest installed
:debug:main llvm-3.3 3.3_1  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/llvm-3.3
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! llvm-3.3 3.3_1 >= llvm-3.3 3.3_1
:debug:main epoch: in tree: 0 installed: 0
:debug:main libffi 3.0.13_0 exists in the ports tree
:debug:main libffi 3.0.13_0  is the latest installed
:debug:main libffi 3.0.13_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libffi
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! libffi 3.0.13_0 >= libffi 3.0.13_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main perl5 5.12.4_0 exists in the ports tree
:debug:main perl5 5.12.4_0 +perl5_16 is the latest installed
:debug:main perl5 5.12.4_0 +perl5_16 is active
:debug:main Merging existing variants '+perl5_16' into variants
:debug:main new fully merged portvariants: perl5_16 +
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Executing variant perl5_16 provides perl5_16
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! perl5 5.12.4_0 >= perl5 5.12.4_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main perl5.16 5.16.1_3 exists in the ports tree
:debug:main perl5.16 5.16.1_3  is the latest installed
:debug:main perl5.16 5.16.1_3  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/perl5.16
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! perl5.16 5.16.1_3 >= perl5.16 5.16.1_3
:debug:main epoch: in tree: 0 installed: 0
:debug:main gdbm 1.11_0 exists in the ports tree
:debug:main gdbm 1.11_0  is the latest installed
:debug:main gdbm 1.11_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/gdbm
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! gdbm 1.11_0 >= gdbm 1.11_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main gettext 0.18.3.2_0 exists in the ports tree
:debug:main gettext 0.18.3.2_0  is the latest installed
:debug:main gettext 0.18.3.2_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main compiler clang 500.2.79 not blacklisted because it doesn't match {clang < 211.10.1}
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! gettext 0.18.3.2_0 >= gettext 0.18.3.2_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main expat 2.1.0_0 exists in the ports tree
:debug:main expat 2.1.0_0  is the latest installed
:debug:main expat 2.1.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main libiconv 1.14_0 exists in the ports tree
:debug:main libiconv 1.14_0  is the latest installed
:debug:main libiconv 1.14_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main ncurses 5.9_2 exists in the ports tree
:debug:main ncurses 5.9_2  is the latest installed
:debug:main ncurses 5.9_2  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
:debug:main epoch: in tree: 0 installed: 0
:debug:main llvm_select 0.2_0 exists in the ports tree
:debug:main llvm_select 0.2_0  is the latest installed
:debug:main llvm_select 0.2_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/llvm_select
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! llvm_select 0.2_0 >= llvm_select 0.2_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main clang_select 0.1_0 exists in the ports tree
:debug:main clang_select 0.1_0  is the latest installed
:debug:main clang_select 0.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/clang_select
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! clang_select 0.1_0 >= clang_select 0.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main ld64 136_2 exists in the ports tree
:debug:main ld64 136_2 +llvm33 is the latest installed
:debug:main ld64 136_2 +llvm33 is active
:debug:main Merging existing variants '+llvm33' into variants
:debug:main new fully merged portvariants: llvm33 +
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ld64
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Executing variant llvm33 provides llvm33
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! ld64 136_2 >= ld64 136_2
:debug:main epoch: in tree: 2 installed: 2
:debug:main python27 2.7.6_0 exists in the ports tree
:debug:main python27 2.7.6_0  is the latest installed
:debug:main python27 2.7.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! python27 2.7.6_0 >= python27 2.7.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main zlib 1.2.8_0 exists in the ports tree
:debug:main zlib 1.2.8_0  is the latest installed
:debug:main zlib 1.2.8_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! zlib 1.2.8_0 >= zlib 1.2.8_0
:debug:main epoch: in tree: 1 installed: 1
:debug:main openssl 1.0.1f_0 exists in the ports tree
:debug:main openssl 1.0.1f_0  is the latest installed
:debug:main openssl 1.0.1f_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! openssl 1.0.1f_0 >= openssl 1.0.1f_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main sqlite3 3.8.3_1 exists in the ports tree
:debug:main sqlite3 3.8.3_1  is the latest installed
:debug:main sqlite3 3.8.3_1  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! sqlite3 3.8.3_1 >= sqlite3 3.8.3_1
:debug:main epoch: in tree: 20090923 installed: 20090923
:debug:main libedit 20121213-3.0_0 exists in the ports tree
:debug:main libedit 20121213-3.0_0  is the latest installed
:debug:main libedit 20121213-3.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main db46 4.6.21_9 exists in the ports tree
:debug:main db46 4.6.21_9  is the latest installed
:debug:main db46 4.6.21_9  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db46
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! db46 4.6.21_9 >= db46 4.6.21_9
:debug:main epoch: in tree: 0 installed: 0
:debug:main db_select 0.1_2 exists in the ports tree
:debug:main db_select 0.1_2  is the latest installed
:debug:main db_select 0.1_2  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/db_select
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! db_select 0.1_2 >= db_select 0.1_2
:debug:main epoch: in tree: 0 installed: 0
:debug:main bzip2 1.0.6_0 exists in the ports tree
:debug:main bzip2 1.0.6_0  is the latest installed
:debug:main bzip2 1.0.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main python_select 0.3_3 exists in the ports tree
:debug:main python_select 0.3_3  is the latest installed
:debug:main python_select 0.3_3  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants:
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
:debug:main OS darwin/13.0.3 (Mac OS X 10.9) arch i386
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main Running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Finished running callback portconfigure::add_automatic_compiler_dependencies
:debug:main Running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main Finished running callback portbuild::add_automatic_buildsystem_dependencies
:debug:main No need to upgrade! python_select 0.3_3 >= python_select 0.3_3
:msg:main --->  Computing dependencies for atlas:info:main .:debug:main atlas has no conflicts
:debug:main Searching for dependency: clang-3.3
:debug:main Found Dependency: receipt exists for clang-3.3
:msg:main
:debug:main Executing org.macports.main (atlas)
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 502
:debug:main Skipping completed org.macports.archivefetch (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.fetch (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.checksum (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.extract (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.patch (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.configure (atlas)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:build build phase started at Fri Feb  7 15:46:50 MST 2014
:notice:build --->  Building atlas
:debug:build Executing org.macports.build (atlas)
:debug:build port disallows a parallel build
:debug:build Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.9' CC='/usr/bin/clang' CXX='/usr/bin/clang++'
:debug:build Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build'
:debug:build Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build
:info:build make: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top build
:info:build make[1]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build cd bin/ ; /Applications/Xcode.app/Contents/Developer/usr/bin/make xatlas_build
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build make[2]: `xatlas_build' is up to date.
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cd bin/ ; ./xatlas_build -1 0 -a 1 -l 1
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build make[2]: *** No rule to make target `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//CONFIG/ARCHS/UNKNOWNx8664AVX.tar.bz2', needed by `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/ARCHS/UNKNOWNx8664AVX'.  Stop.
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil ; /Applications/Xcode.app/Contents/Developer/usr/bin/make -s ATL_buildinfo.o
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil ; /Applications/Xcode.app/Contents/Developer/usr/bin/make lib
:info:build make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil'
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo ; /Applications/Xcode.app/Contents/Developer/usr/bin/make /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h
:info:build make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo/xsyssum s /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h
:info:build
:info:build       Read in L1 Cache size as = 32KB.
:info:build make[5]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make RunMulAdd pre=s
:info:build make[6]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
:info:build ./xmasrch -p s -o res/sMULADD
:info:build /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin/ATLrun.sh: line 4: 44893 Abort trap: 6           $atldir/$*
:info:build make[7]: *** [xsma] Error 134
:info:build Assertion failed: (!system(ln)), function matime, file /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//tune/sysinfo/masrch.c, line 108.
:info:build Finding how many mflops required to get .025 second timings:
:info:build    1: 2.000000e-04
:info:build    2: 3.000000e-04
:info:build    4: 6.000000e-04
:info:build    8: 1.000000e-03
:info:build    16: 3.000000e-03
:info:build    32: 5.000000e-03
:info:build    64: 1.000000e-02
:info:build    128: 2.000000e-02
:info:build    256: 4.000000e-02
:info:build FORCE MFLOP=256, TIME=4.000000e-02
:info:build
:info:build FINDING USABLE NREG:
:info:build      2: 1553.51
:info:build      4: 3101.17
:info:build      8: 6205.83
:info:build     16: 6425.23
:info:build     32: 7697.11
:info:build     64: 7708.87
:info:build    128: 6866.67
:info:build
:info:build     96: 7558.92
:info:build make[6]: *** [RunMulAdd] Abort trap: 6
:info:build make[6]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
:info:build make[5]: *** [res/sMULADD] Error 2
:info:build make[5]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
:info:build Assertion failed: (system(fnam) == 0), function getfpinfo0, file /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/..//tune/sysinfo/GetSysSum.c, line 69.
:info:build make[4]: *** [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h] Abort trap: 6
:info:build make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/tune/sysinfo'
:info:build make[3]: *** [/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/include/atlas_ssysinfo.h] Error 2
:info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/src/auxil'
:info:build make[2]: *** [IStage1] Error 2
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build ERROR 621 DURING CACHESIZE SEARCH!!.  CHECK INSTALL_LOG/Stage1.log FOR DETAILS.
:info:build make[2]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build ; /Applications/Xcode.app/Contents/Developer/usr/bin/make error_report
:info:build make[3]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build /Applications/Xcode.app/Contents/Developer/usr/bin/make -f Make.top error_report
:info:build make[4]: Entering directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build uname -a 2>&1 >> bin/INSTALL_LOG/ERROR.LOG
:info:build /opt/local/bin/clang-mp-3.3 -v 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
:info:build clang version 3.3 (tags/RELEASE_33/final)
:info:build Target: x86_64-apple-darwin13.0.3
:info:build Thread model: posix
:info:build /opt/local/bin/clang-mp-3.3 -V 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
:info:build clang: error: argument to '-V' is missing (expected 1 value)
:info:build clang: error: no input files
:info:build make[4]: [error_report] Error 1 (ignored)
:info:build /opt/local/bin/clang-mp-3.3 --version 2>&1  >> bin/INSTALL_LOG/ERROR.LOG
:info:build tar cf error_UNKNOWNx8664AVX.tar Make.inc bin/INSTALL_LOG/*
:info:build bzip2 error_UNKNOWNx8664AVX.tar
:info:build bzip2: Output file error_UNKNOWNx8664AVX.tar.bz2 already exists.
:info:build make[4]: *** [error_report] Error 1
:info:build make[4]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build make[3]: *** [error_report] Error 2
:info:build make[3]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build make[2]: *** [error_report] Error 2
:info:build make[2]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build/bin'
:info:build cat: ../../CONFIG/error.txt: No such file or directory
:info:build cat: ../../CONFIG/error.txt: No such file or directory
:info:build
:info:build
:info:build BEGIN STAGE 1-0-0: SYSTEM PROBE/AUX COMPILE at 15:46
:info:build make[1]: *** [build] Error 255
:info:build make[1]: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build make: *** [build] Error 2
:info:build make: Leaving directory `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build'
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/work/ATLAS/build" && /usr/bin/make -w build
:info:build Exit code: 2
:error:build org.macports.build for port atlas returned: command execution failed
:debug:build Error code: CHILDSTATUS 44769 2
:debug:build Backtrace: command execution failed
    while executing
"system -nice 0 $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"$procedure $targetname"
:info:build Warning: targets not executed for atlas: org.macports.activate org.macports.build org.macports.destroot org.macports.install
:notice:build Please see the log file for port atlas for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log

[ryandesign (Ryan Carsten Schmidt)]

Remember to fill in the Port field, to Cc the port's maintainer, and to use WikiFormatting and to preview before submitting. Logs should be attached, not pasted. Your log is not from a clean attempt; please ​clean and try again.