Opened 7 years ago
Last modified 7 years ago
#54560 closed defect
ncview and hdf5 install loop — at Initial Version
Reported by: | basmac | Owned by: | |
---|---|---|---|
Priority: | Normal | Milestone: | |
Component: | ports | Version: | |
Keywords: | Cc: | mmoll@…, thiagoveloso@… | |
Port: | ncview hdf5 |
Description
on El Cap, no issue on Sierra for same installs, get infinite loop on ncview install/update, requests hdf5 deactivate, then keeps requesting it - port -f deactivate hdf5 ---> Unable to deactivate hdf5 @1.10.1_1+cxx+hl, the following ports depend on it: ---> wgrib2 @2.0.5_3+gcc6 ---> grads @2.0.2_13 ---> grib_api @1.19.0_2+gcc6 ---> py27-h5py @2.7.0_1 ---> py27-tables @3.4.2_1 ---> py34-tables @3.4.2_1 ---> cdo @1.8.2_0 ---> nco @4.6.6_2+accelerate ---> hdfeos5 @1.15_13 ---> netcdf @4.4.1.1_0+dap+netcdf4 Warning: Deactivate forced. Proceeding despite dependencies. ---> Deactivating hdf5 @1.10.1_1+cxx+hl ---> Cleaning hdf5 bash-3.2# port clean ncview ---> Cleaning ncview bash-3.2# port install ncview ---> Computing dependencies for ncview ---> Cleaning ncview ---> Scanning binaries for linking errors ---> Found 165 broken files, matching files to ports ---> Found 12 broken ports, determining rebuild order You can always run 'port rev-upgrade' again to fix errors. The following ports will be rebuilt: py27-tables @3.4.2 py34-tables @3.4.2 netcdf @4.4.1.1+dap+netcdf4 ncview @2.1.7 grib_api @1.19.0+gcc6 libemos @4.4.4+gcc5 cdo @1.8.2 nco @4.6.6+accelerate wgrib2 @2.0.5+gcc6 grads @2.0.2 py27-h5py @2.7.0 py27-netcdf4 @1.2.9 Continue? [Y/n]: Y ---> Computing dependencies for py27-tables ---> Dependencies to be installed: hdf5 ---> Activating hdf5 @1.10.1_1+cxx+hl ---> Cleaning hdf5 ---> Cleaning py27-tables ---> Computing dependencies for py34-tables ---> Cleaning py34-tables ---> Computing dependencies for netcdf ---> Cleaning netcdf ---> Computing dependencies for ncview ---> Cleaning ncview ---> Computing dependencies for grib_api ---> Cleaning grib_api ---> Computing dependencies for libemos ---> Cleaning libemos ---> Computing dependencies for cdo ---> Cleaning cdo ---> Computing dependencies for nco ---> Cleaning nco ---> Computing dependencies for wgrib2 ---> Cleaning wgrib2 ---> Computing dependencies for grads ---> Cleaning grads ---> Computing dependencies for py27-h5py ---> Cleaning py27-h5py ---> Computing dependencies for py27-netcdf4 ---> Cleaning py27-netcdf4 ---> Scanning binaries for linking errors ---> Found 2 broken files, matching files to ports ---> Found 1 broken port, determining rebuild order ---> Rebuilding in order ncview @2.1.7 ---> Computing dependencies for ncview ---> Fetching distfiles for ncview ---> Verifying checksums for ncview ---> Extracting ncview ---> Applying patches to ncview ---> Configuring ncview Error: ncview cannot be built while hdf5 is active. Error: Please forcibly deactivate hdf5, e.g. by running: Error: Error: sudo port -f deactivate hdf5 Error: Error: Then try again. You can reactivate hdf5 again later. Error: Failed to configure ncview: hdf5 is active Error: See /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_science_ncview/ncview/main.log for details. Error: rev-upgrade failed: Error rebuilding ncview Error: Follow https://guide.macports.org/#project.tickets to report a bug. ---> Some of the ports you installed have notes: hdf5 has the following notes: Mac users may need to set the environment variable "HDF5_USE_FILE_LOCKING" to the five-character string "FALSE" when accessing network mounted files. This is an application run-time setting, not a configure or build setting. Otherwise errors such as "unable to open file" or "HDF5 error" may be encountered. bash-3.2#
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