OpenBLAS @0.3.24: failed to destroot

[karo11]

Trial to build under MacOS Sonoma 14.0

[karo11]

Build log of OpenBLAS

[ryandesign (Ryan Carsten Schmidt)]

The error in the log is:

error: /Library/Developer/CommandLineTools/usr/bin/install_name_tool: input file: .../libopenblas-r1.dylib is not a Mach-O file

I don't see anything obviously wrong where that dylib is created:

/Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/compwrap/fc/opt/local/bin/gfortran-mp-13 -m64 -Os -O3 -m128bit-long-double -Wall -frecursive -fno-optimize-sibling-calls -m64 -fPIC -msse3 -mssse3 -msse4.1 -O3 -m128bit-long-double -Wall -frecursive -fno-optimize-sibling-calls -m64 -fPIC -msse3 -mssse3 -msse4.1 -L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath,/opt/local/lib/libgcc -Wl,-syslibroot,/Library/Developer/CommandLineTools/SDKs/MacOSX14.sdk -all_load -headerpad_max_install_names -install_name "/Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/OpenBLAS-0.3.24/exports/../libopenblas.1.dylib" -dynamiclib -o ../libopenblas-r1.dylib ../libopenblas-r1.a -Wl,-exported_symbols_list,osx.def  -L/Volumes/mbkaroSD2/opt/local/bin/../lib/gcc13/gcc/x86_64-apple-darwin23/13.2.0 -L/Volumes/mbkaroSD2/opt/local/bin/../lib/gcc13/gcc -L/opt/local/lib -L/Volumes/mbkaroSD2/opt/local/bin/../lib/gcc13/gcc/x86_64-apple-darwin23/13.2.0/../../..  -lgfortran -lquadmath -lSystem 
ld: warning: duplicate -rpath '/opt/local/lib/libgcc' ignored

Warnings should be harmless so the problem is probably something else.

Can you find the file libopenblas-r1.dylib in the work directory and tell us what type of file it is?

find $(port work OpenBLAS) -name libopenblas-r1.dylib -print0 | xargs -0 file

[karo11]

$ find $(port work OpenBLAS) -name libopenblas-r1.dylib -print0 | xargs -0 file
/Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/destroot/opt/local/lib/libopenblas-r1.dylib: data
/Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/OpenBLAS-0.3.24/libopenblas-r1.dylib:        Mach-O 64-bit dynamically linked shared library x86_64

[karo11]

Perhaps add. info?

otool -L /Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/OpenBLAS-0.3.24/libopenblas-r1.dylib
/Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/OpenBLAS-0.3.24/libopenblas-r1.dylib:
	/Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/OpenBLAS-0.3.24/exports/../libopenblas.1.dylib (compatibility version 0.0.0, current version 0.0.0)
	@rpath/libgfortran.5.dylib (compatibility version 6.0.0, current version 6.0.0)
	@rpath/libquadmath.0.dylib (compatibility version 1.0.0, current version 1.0.0)
	/usr/lib/libSystem.B.dylib (compatibility version 1.0.0, current version 1336.0.0)
	@rpath/libgcc_s.1.1.dylib (compatibility version 1.0.0, current version 1.1.0)

[ryandesign (Ryan Carsten Schmidt)]

Ok, so a proper Mach-O dylib was built, but for some reason what ended up in the destroot is not a Mach-O dylib but "data". What kind of data?

I wonder how the dylib is being copied to the destroot, because that seems like where the problem might be. Unfortunately the log only says:

Copying the shared library to /Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/destroot/opt/local/lib

without showing us the exact commands that were used to do so.

[karo11]

I have tried a different, better said, a reduced PATH using only system bin folder and macports bin folder. There was no difference, still the error. But the last trial delivered a different one. I'll add the log file

:error:destroot Failed to destroot OpenBLAS: ln: /Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/destroot/opt/local/include/lapacke.h: File exists
:debug:destroot Error code: NONE
:debug:destroot Backtrace: ln: /Volumes/mbkaroSD2/opt/local/var/macports/build/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/work/destroot/opt/local/include/lapacke.h: File exists
:debug:destroot     while executing
:debug:destroot "$post $targetname"
:error:destroot See /opt/local/var/macports/logs/_Volumes_mbkaroSD2_opt_local_var_macports_sources_rsync.macports.org_macports_release_tarballs_ports_math_OpenBLAS/OpenBLAS/main.log for details.

The PATH was

/opt/local/bin:/opt/local/sbin:/usr/bin:/bin:/usr/sbin:/sbin

Earlier I used the gnubin package (coreutils).

[karo11]

latest build log

[kencu (Ken)]

FWIW, it works for me on an M1 Mac:

 % port -v installed openblas
The following ports are currently installed:
  OpenBLAS @0.3.24_0+gcc13+lapack (active) requested_variants='' platform='darwin 23' archs='arm64' date='2023-10-13T07:36:40-0700'

You're building it on Intel it appears.

[karo11]

Yes, building on my intel MacBook under MacOS Sonoma.

I'll add another build log with

port -v install openblas

[karo11]

The error has disappeared!

I had /opt/local linked to another disk. I copied /opt/local from the external disk to the main disk. Here the build error did not appear anymore.

I assume the generated long filenames (see the attached log files) during build led to the error!

Unluckily, now an error appears in port SuiteSparse_CHOLMOD. Since I used OpenCore Legacy Patcher to install MacOS Sonoma I am not sure about the source of the problem.

[jmroot (Joshua Root)]

Also fails this way on the buildbot: ​https://build.macports.org/builders/ports-14_x86_64-builder/builds/291/steps/install-port/logs/stdio

[karo11]

At least it seems not to be an error by OpenCore Legacy Patcher...

[ryandesign (Ryan Carsten Schmidt)]

That buildbot worker is also using OpenCore Legacy Patcher. But I doubt that's related.