Ticket #38397: Portfile

File Portfile, 1.8 KB (added by sean@…, 12 years ago)

Updated

Line 
1# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
2# $Id$
3
4PortSystem          1.0
5
6name                bowtie2
7version             2.1.0
8categories          science
9platforms           darwin
10license             GPL-3
11
12homepage            http://bowtie-bio.sourceforge.net/bowtie2
13description         Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.
14long_description    Bowtie 2 is an ultrafast and memory-efficient tool for aligning \
15                    sequencing reads to long reference sequences. It is particularly \
16                    good at aligning reads of about 50 up to 100s or 1,000s of characters, \
17                    and particularly good at aligning to relatively long (e.g. mammalian) \
18                    genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory \
19                    footprint small: for the human genome, its memory footprint is typically \
20                    around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.
21maintainers         node99.org:sean openmaintainer
22
23master_sites        sourceforge:bowtie-bio
24distfiles           ${name}-${version}-source.zip
25use_zip             yes
26checksums           rmd160 8c9caecffae919c7ee53a774ef1aabe60f9f04ba \
27                    sha256 90a9d3a6bd19ddc3a8f90b935c6a2288478572de2ad4039b29f91016b95ef4b0
28use_configure       no
29
30destroot {
31    eval xinstall -m 755 ${worksrcpath}/bowtie2         ${destroot}${prefix}/bin
32    eval xinstall -m 755 ${worksrcpath}/bowtie2-align   ${destroot}${prefix}/bin
33    eval xinstall -m 755 ${worksrcpath}/bowtie2-build   ${destroot}${prefix}/bin
34    eval xinstall -m 755 ${worksrcpath}/bowtie2-inspect ${destroot}${prefix}/bin
35}