| 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
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| 2 | # $Id$ |
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| 3 | |
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| 4 | PortSystem 1.0 |
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| 5 | |
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| 6 | name bowtie2 |
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| 7 | version 2.1.0 |
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| 8 | categories science |
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| 9 | platforms darwin |
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| 10 | license GPL-3 |
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| 11 | |
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| 12 | homepage http://bowtie-bio.sourceforge.net/bowtie2 |
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| 13 | description Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences. |
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| 14 | long_description Bowtie 2 is an ultrafast and memory-efficient tool for aligning \ |
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| 15 | sequencing reads to long reference sequences. It is particularly \ |
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| 16 | good at aligning reads of about 50 up to 100s or 1,000s of characters, \ |
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| 17 | and particularly good at aligning to relatively long (e.g. mammalian) \ |
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| 18 | genomes. Bowtie 2 indexes the genome with an FM Index to keep its memory \ |
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| 19 | footprint small: for the human genome, its memory footprint is typically \ |
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| 20 | around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. |
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| 21 | maintainers node99.org:sean openmaintainer |
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| 22 | |
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| 23 | master_sites sourceforge:project/bowtie-bio/bowtie2/${version} |
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| 24 | distname ${name}-${version}-source |
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| 25 | use_zip yes |
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| 26 | worksrcdir ${name}-${version} |
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| 27 | checksums rmd160 8c9caecffae919c7ee53a774ef1aabe60f9f04ba \ |
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| 28 | sha256 90a9d3a6bd19ddc3a8f90b935c6a2288478572de2ad4039b29f91016b95ef4b0 |
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| 29 | use_configure no |
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| 30 | build.args-append CC=${configure.cc} \ |
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| 31 | CXX=${configure.cxx} \ |
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| 32 | CPP=${configure.cpp} |
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| 33 | |
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| 34 | destroot { |
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| 35 | xinstall -W ${worksrcpath} bowtie2 bowtie2-align bowtie2-build bowtie2-inspect ${destroot}${prefix}/bin |
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| 36 | } |
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