| 1 | DEBUG: Changing to port directory: /opt/bblocal/var/buildworker/ports/build/ports/science/netcdf-fortran |
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| 2 | DEBUG: OS darwin/13.4.0 (macOS 10.9.5) arch i386 |
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| 3 | DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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| 4 | DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/active_variants-1.1.tcl |
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| 5 | DEBUG: GCC versions for Darwin 13 i386 - 5 6 7 8 9 10 11 12 devel |
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| 6 | DEBUG: Clang versions for Darwin 13 i386 - 3.4 3.7 5.0 6.0 7.0 8.0 9.0 10 11 12 13 14 15 16 |
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| 7 | DEBUG: Sourcing PortGroup compilers 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/compilers-1.0.tcl |
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| 8 | DEBUG: Sourcing PortGroup mpi 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/mpi-1.0.tcl |
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| 9 | DEBUG: Sourcing PortGroup github 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/github-1.0.tcl |
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| 10 | DEBUG: Re-registering default for extract.rename |
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| 11 | DEBUG: Re-registering default for livecheck.url |
|---|
| 12 | DEBUG: Re-registering default for livecheck.regex |
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| 13 | DEBUG: muniversal: adding universal variant |
|---|
| 14 | DEBUG: Reading variant descriptions from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/variant_descriptions.conf |
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| 15 | DEBUG: Executing variant gcc12 provides gcc12 |
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| 16 | DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies |
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| 17 | DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 18 | DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 19 | DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies |
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| 20 | DEBUG: Running callback portstartupitem::add_notes |
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| 21 | DEBUG: Finished running callback portstartupitem::add_notes |
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| 22 | DEBUG: Running callback compilers::add_fortran_legacy_support |
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| 23 | DEBUG: Finished running callback compilers::add_fortran_legacy_support |
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| 24 | DEBUG: Running callback compilers::add_gcc_rpath_support |
|---|
| 25 | DEBUG: compilers PG: RPATH added to ldflags as GCC version is 12 |
|---|
| 26 | DEBUG: Finished running callback compilers::add_gcc_rpath_support |
|---|
| 27 | DEBUG: dropping privileges: euid changed to 502, egid changed to 501. |
|---|
| 28 | DEBUG: Starting logging for netcdf-fortran @4.6.1_0+gcc12 |
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| 29 | DEBUG: OS X 10.9.5 (darwin/13.4.0) arch i386 |
|---|
| 30 | DEBUG: MacPorts 2.8.1 |
|---|
| 31 | DEBUG: Xcode 6.2, CLT 6.2.0.0.1.1424975374 |
|---|
| 32 | DEBUG: SDK 10.9 |
|---|
| 33 | DEBUG: MACOSX_DEPLOYMENT_TARGET: 10.9 |
|---|
| 34 | DEBUG: Executing org.macports.main (netcdf-fortran) |
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| 35 | DEBUG: dropping privileges: euid changed to 502, egid changed to 501. |
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| 36 | DEBUG: fetch phase started at Wed Aug 30 04:16:54 UTC 2023 |
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| 37 | ---> Fetching distfiles for netcdf-fortran |
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| 38 | DEBUG: elevating privileges for fetch: euid changed to 0, egid changed to 0. |
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| 39 | DEBUG: dropping privileges: euid changed to 502, egid changed to 501. |
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| 40 | DEBUG: Executing proc-pre-org.macports.fetch-fetch-0 |
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| 41 | DEBUG: Executing proc-pre-org.macports.fetch-fetch-1 |
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| 42 | DEBUG: mpi.enforce_variant list: netcdf |
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| 43 | DEBUG: netcdf is installed with the following variants: +cdf5+dap+netcdf4 |
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| 44 | DEBUG: required: , forbidden: |
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| 45 | DEBUG: accepted |
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| 46 | DEBUG: netcdf is installed with the following variants: +cdf5+dap+netcdf4 |
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| 47 | DEBUG: required: mpich, forbidden: |
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| 48 | DEBUG: rejected, because required variant mpich is missing |
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| 49 | DEBUG: netcdf is installed with the following variants: +cdf5+dap+netcdf4 |
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| 50 | DEBUG: required: openmpi, forbidden: |
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| 51 | DEBUG: rejected, because required variant openmpi is missing |
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| 52 | DEBUG: Executing org.macports.fetch (netcdf-fortran) |
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| 53 | ---> netcdf-fortran-4.6.1.tar.gz does not exist in /opt/local/var/macports/distfiles/netcdf-fortran |
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| 54 | ---> Attempting to fetch netcdf-fortran-4.6.1.tar.gz from http://distfiles.macports.org/netcdf-fortran |
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| 55 | % Total % Received % Xferd Average Speed Time Time Time Current |
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| 56 | Dload Upload Total Spent Left Speed |
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| 57 | |
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| 58 | 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 |
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| 59 | 100 1998k 100 1998k 0 0 43.6M 0 --:--:-- --:--:-- --:--:-- 44.3M |
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| 60 | DEBUG: Changing to port directory: /opt/bblocal/var/buildworker/ports/build/ports/science/netcdf-fortran |
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| 61 | DEBUG: OS darwin/13.4.0 (macOS 10.9.5) arch i386 |
|---|
| 62 | DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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| 63 | DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/active_variants-1.1.tcl |
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| 64 | DEBUG: GCC versions for Darwin 13 i386 - 5 6 7 8 9 10 11 12 devel |
|---|
| 65 | DEBUG: Clang versions for Darwin 13 i386 - 3.4 3.7 5.0 6.0 7.0 8.0 9.0 10 11 12 13 14 15 16 |
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| 66 | DEBUG: Sourcing PortGroup compilers 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/compilers-1.0.tcl |
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| 67 | DEBUG: Sourcing PortGroup mpi 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/mpi-1.0.tcl |
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| 68 | DEBUG: Sourcing PortGroup github 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/github-1.0.tcl |
|---|
| 69 | DEBUG: Re-registering default for extract.rename |
|---|
| 70 | DEBUG: Re-registering default for livecheck.url |
|---|
| 71 | DEBUG: Re-registering default for livecheck.regex |
|---|
| 72 | DEBUG: muniversal: adding universal variant |
|---|
| 73 | DEBUG: Reading variant descriptions from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/variant_descriptions.conf |
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| 74 | DEBUG: Executing variant gcc12 provides gcc12 |
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| 75 | DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies |
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| 76 | DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 77 | DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 78 | DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 79 | DEBUG: Running callback portstartupitem::add_notes |
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| 80 | DEBUG: Finished running callback portstartupitem::add_notes |
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| 81 | DEBUG: Running callback compilers::add_fortran_legacy_support |
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| 82 | DEBUG: Finished running callback compilers::add_fortran_legacy_support |
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| 83 | DEBUG: Running callback compilers::add_gcc_rpath_support |
|---|
| 84 | DEBUG: compilers PG: RPATH added to ldflags as GCC version is 12 |
|---|
| 85 | DEBUG: Finished running callback compilers::add_gcc_rpath_support |
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| 86 | DEBUG: dropping privileges: euid changed to 502, egid changed to 501. |
|---|
| 87 | DEBUG: Starting logging for netcdf-fortran @4.6.1_0+gcc12 |
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| 88 | DEBUG: OS X 10.9.5 (darwin/13.4.0) arch i386 |
|---|
| 89 | DEBUG: MacPorts 2.8.1 |
|---|
| 90 | DEBUG: Xcode 6.2, CLT 6.2.0.0.1.1424975374 |
|---|
| 91 | DEBUG: SDK 10.9 |
|---|
| 92 | DEBUG: MACOSX_DEPLOYMENT_TARGET: 10.9 |
|---|
| 93 | DEBUG: Executing org.macports.main (netcdf-fortran) |
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| 94 | DEBUG: dropping privileges: euid changed to 502, egid changed to 501. |
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| 95 | DEBUG: Skipping completed org.macports.fetch (netcdf-fortran) |
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| 96 | DEBUG: Privilege de-escalation not attempted as not running as root. |
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| 97 | DEBUG: checksum phase started at Wed Aug 30 04:16:55 UTC 2023 |
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| 98 | ---> Verifying checksums for netcdf-fortran |
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| 99 | DEBUG: Executing org.macports.checksum (netcdf-fortran) |
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| 100 | ---> Checksumming netcdf-fortran-4.6.1.tar.gz |
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| 101 | DEBUG: Calculated (rmd160) is 12bf9c7ba84f60f77e7d77e069e9365bfd3c4659 |
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| 102 | DEBUG: Correct (rmd160) checksum for netcdf-fortran-4.6.1.tar.gz |
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| 103 | DEBUG: Calculated (sha256) is 921be559e162d90370faecba7d60fa12dc4534600807a519520c277de5e7691c |
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| 104 | DEBUG: Correct (sha256) checksum for netcdf-fortran-4.6.1.tar.gz |
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| 105 | DEBUG: Calculated (size) is 2046635 |
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| 106 | DEBUG: Correct (size) checksum for netcdf-fortran-4.6.1.tar.gz |
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| 107 | DEBUG: Changing to port directory: /opt/bblocal/var/buildworker/ports/build/ports/science/netcdf-fortran |
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| 108 | DEBUG: OS darwin/13.4.0 (macOS 10.9.5) arch i386 |
|---|
| 109 | DEBUG: Sourcing PortGroup muniversal 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/muniversal-1.0.tcl |
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| 110 | DEBUG: Sourcing PortGroup active_variants 1.1 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/active_variants-1.1.tcl |
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| 111 | DEBUG: GCC versions for Darwin 13 i386 - 5 6 7 8 9 10 11 12 devel |
|---|
| 112 | DEBUG: Clang versions for Darwin 13 i386 - 3.4 3.7 5.0 6.0 7.0 8.0 9.0 10 11 12 13 14 15 16 |
|---|
| 113 | DEBUG: Sourcing PortGroup compilers 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/compilers-1.0.tcl |
|---|
| 114 | DEBUG: Sourcing PortGroup mpi 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/mpi-1.0.tcl |
|---|
| 115 | DEBUG: Sourcing PortGroup github 1.0 from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/group/github-1.0.tcl |
|---|
| 116 | DEBUG: Re-registering default for extract.rename |
|---|
| 117 | DEBUG: Re-registering default for livecheck.url |
|---|
| 118 | DEBUG: Re-registering default for livecheck.regex |
|---|
| 119 | DEBUG: muniversal: adding universal variant |
|---|
| 120 | DEBUG: Reading variant descriptions from /opt/bblocal/var/buildworker/ports/build/ports/_resources/port1.0/variant_descriptions.conf |
|---|
| 121 | DEBUG: Executing variant gcc12 provides gcc12 |
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| 122 | DEBUG: Running callback portconfigure::add_automatic_compiler_dependencies |
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| 123 | DEBUG: Finished running callback portconfigure::add_automatic_compiler_dependencies |
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| 124 | DEBUG: Running callback portbuild::add_automatic_buildsystem_dependencies |
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| 125 | DEBUG: Finished running callback portbuild::add_automatic_buildsystem_dependencies |
|---|
| 126 | DEBUG: Running callback portstartupitem::add_notes |
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| 127 | DEBUG: Finished running callback portstartupitem::add_notes |
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| 128 | DEBUG: Running callback compilers::add_fortran_legacy_support |
|---|
| 129 | DEBUG: Finished running callback compilers::add_fortran_legacy_support |
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| 130 | DEBUG: Running callback compilers::add_gcc_rpath_support |
|---|
| 131 | DEBUG: compilers PG: RPATH added to ldflags as GCC version is 12 |
|---|
| 132 | DEBUG: Finished running callback compilers::add_gcc_rpath_support |
|---|
| 133 | DEBUG: dropping privileges: euid changed to 502, egid changed to 501. |
|---|
| 134 | DEBUG: Starting logging for netcdf-fortran @4.6.1_0+gcc12 |
|---|
| 135 | DEBUG: OS X 10.9.5 (darwin/13.4.0) arch i386 |
|---|
| 136 | DEBUG: MacPorts 2.8.1 |
|---|
| 137 | DEBUG: Xcode 6.2, CLT 6.2.0.0.1.1424975374 |
|---|
| 138 | DEBUG: SDK 10.9 |
|---|
| 139 | DEBUG: MACOSX_DEPLOYMENT_TARGET: 10.9 |
|---|
| 140 | DEBUG: Fetching netcdf-fortran-4.6.1_0+gcc12.darwin_13.x86_64.tbz2 archive size |
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| 141 | ---> Computing dependencies for netcdf-fortran |
|---|
| 142 | DEBUG: netcdf-fortran has no conflicts |
|---|
| 143 | DEBUG: Searching for dependency: gcc12 |
|---|
| 144 | DEBUG: Found Dependency: receipt exists for gcc12 |
|---|
| 145 | DEBUG: Searching for dependency: netcdf |
|---|
| 146 | DEBUG: Found Dependency: receipt exists for netcdf |
|---|
| 147 | DEBUG: Searching for dependency: libgcc |
|---|
| 148 | DEBUG: Found Dependency: receipt exists for libgcc |
|---|
| 149 | DEBUG: Executing org.macports.main (netcdf-fortran) |
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| 150 | DEBUG: dropping privileges: euid changed to 502, egid changed to 501. |
|---|
| 151 | DEBUG: archivefetch phase started at Wed Aug 30 04:16:56 UTC 2023 |
|---|
| 152 | ---> Fetching archive for netcdf-fortran |
|---|
| 153 | DEBUG: Executing proc-pre-org.macports.archivefetch-archivefetch-0 |
|---|
| 154 | DEBUG: Executing proc-pre-org.macports.archivefetch-archivefetch-1 |
|---|
| 155 | DEBUG: mpi.enforce_variant list: netcdf |
|---|
| 156 | DEBUG: netcdf is installed with the following variants: +cdf5+dap+netcdf4 |
|---|
| 157 | DEBUG: required: , forbidden: |
|---|
| 158 | DEBUG: accepted |
|---|
| 159 | DEBUG: netcdf is installed with the following variants: +cdf5+dap+netcdf4 |
|---|
| 160 | DEBUG: required: mpich, forbidden: |
|---|
| 161 | DEBUG: rejected, because required variant mpich is missing |
|---|
| 162 | DEBUG: netcdf is installed with the following variants: +cdf5+dap+netcdf4 |
|---|
| 163 | DEBUG: required: openmpi, forbidden: |
|---|
| 164 | DEBUG: rejected, because required variant openmpi is missing |
|---|
| 165 | DEBUG: Executing org.macports.archivefetch (netcdf-fortran) |
|---|
| 166 | DEBUG: euid/egid changed to: 0/0 |
|---|
| 167 | DEBUG: chowned /opt/local/var/macports/incoming to macports |
|---|
| 168 | DEBUG: euid/egid changed to: 502/501 |
|---|
| 169 | ---> netcdf-fortran-4.6.1_0+gcc12.darwin_13.x86_64.tbz2 doesn't seem to exist in /opt/local/var/macports/incoming/verified |
|---|
| 170 | ---> Attempting to fetch netcdf-fortran-4.6.1_0+gcc12.darwin_13.x86_64.tbz2 from http://packages-private.internal.macports.net/netcdf-fortran |
|---|
| 171 | % Total % Received % Xferd Average Speed Time Time Time Current |
|---|
| 172 | Dload Upload Total Spent Left Speed |
|---|
| 173 | |
|---|
| 174 | 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 |
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| 175 | 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 |
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| 176 | DEBUG: Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 177 | ---> Attempting to fetch netcdf-fortran-4.6.1_0+gcc12.darwin_13.x86_64.tbz2 from http://packages-private.internal.macports.net/netcdf-fortran |
|---|
| 178 | % Total % Received % Xferd Average Speed Time Time Time Current |
|---|
| 179 | Dload Upload Total Spent Left Speed |
|---|
| 180 | |
|---|
| 181 | 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 |
|---|
| 182 | 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 |
|---|
| 183 | DEBUG: Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 184 | ---> Attempting to fetch netcdf-fortran-4.6.1_0+gcc12.darwin_13.x86_64.tbz2 from http://packages.internal.macports.net/netcdf-fortran |
|---|
| 185 | % Total % Received % Xferd Average Speed Time Time Time Current |
|---|
| 186 | Dload Upload Total Spent Left Speed |
|---|
| 187 | |
|---|
| 188 | 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 |
|---|
| 189 | 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 |
|---|
| 190 | DEBUG: Fetching archive failed: The requested URL returned error: 404 Not Found |
|---|
| 191 | DEBUG: Privilege de-escalation not attempted as not running as root. |
|---|
| 192 | DEBUG: Skipping completed org.macports.fetch (netcdf-fortran) |
|---|
| 193 | DEBUG: Privilege de-escalation not attempted as not running as root. |
|---|
| 194 | DEBUG: Skipping completed org.macports.checksum (netcdf-fortran) |
|---|
| 195 | DEBUG: Privilege de-escalation not attempted as not running as root. |
|---|
| 196 | DEBUG: extract phase started at Wed Aug 30 04:16:56 UTC 2023 |
|---|
| 197 | ---> Extracting netcdf-fortran |
|---|
| 198 | DEBUG: Executing org.macports.extract (netcdf-fortran) |
|---|
| 199 | ---> Extracting netcdf-fortran-4.6.1.tar.gz |
|---|
| 200 | DEBUG: setting option extract.args to '/opt/local/var/macports/distfiles/netcdf-fortran/netcdf-fortran-4.6.1.tar.gz' |
|---|
| 201 | DEBUG: Environment: |
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| 202 | CC_PRINT_OPTIONS='YES' |
|---|
| 203 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/.CC_PRINT_OPTIONS' |
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| 204 | CPATH='/opt/local/include' |
|---|
| 205 | DEVELOPER_DIR='/Library/Developer/CommandLineTools' |
|---|
| 206 | LIBRARY_PATH='/opt/local/lib' |
|---|
| 207 | MACOSX_DEPLOYMENT_TARGET='10.9' |
|---|
| 208 | Executing: cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/netcdf-fortran/netcdf-fortran-4.6.1.tar.gz' | /usr/bin/tar -xf - |
|---|
| 209 | DEBUG: system: cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work" && /usr/bin/gzip -dc '/opt/local/var/macports/distfiles/netcdf-fortran/netcdf-fortran-4.6.1.tar.gz' | /usr/bin/tar -xf - |
|---|
| 210 | DEBUG: euid/egid changed to: 0/0 |
|---|
| 211 | DEBUG: chowned /opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work to macports |
|---|
| 212 | DEBUG: euid/egid changed to: 502/501 |
|---|
| 213 | DEBUG: extract.rename: Renaming Unidata-netcdf-fortran-a6cd33e -> netcdf-fortran-4.6.1 |
|---|
| 214 | DEBUG: Privilege de-escalation not attempted as not running as root. |
|---|
| 215 | DEBUG: patch phase started at Wed Aug 30 04:16:57 UTC 2023 |
|---|
| 216 | DEBUG: Executing org.macports.patch (netcdf-fortran) |
|---|
| 217 | ---> Applying patches to netcdf-fortran |
|---|
| 218 | ---> Applying patch-nf03_test4-Makefile.in.diff |
|---|
| 219 | DEBUG: Environment: |
|---|
| 220 | CC_PRINT_OPTIONS='YES' |
|---|
| 221 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/.CC_PRINT_OPTIONS' |
|---|
| 222 | CPATH='/opt/local/include' |
|---|
| 223 | DEVELOPER_DIR='/Library/Developer/CommandLineTools' |
|---|
| 224 | LIBRARY_PATH='/opt/local/lib' |
|---|
| 225 | MACOSX_DEPLOYMENT_TARGET='10.9' |
|---|
| 226 | Executing: cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/netcdf-fortran-4.6.1" && /usr/bin/patch -p0 < '/opt/bblocal/var/buildworker/ports/build/ports/science/netcdf-fortran/files/patch-nf03_test4-Makefile.in.diff' |
|---|
| 227 | DEBUG: system: cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/netcdf-fortran-4.6.1" && /usr/bin/patch -p0 < '/opt/bblocal/var/buildworker/ports/build/ports/science/netcdf-fortran/files/patch-nf03_test4-Makefile.in.diff' |
|---|
| 228 | patching file nf03_test4/Makefile.in |
|---|
| 229 | DEBUG: Executing proc-post-org.macports.patch-patch-0 |
|---|
| 230 | DEBUG: Privilege de-escalation not attempted as not running as root. |
|---|
| 231 | DEBUG: configure phase started at Wed Aug 30 04:16:57 UTC 2023 |
|---|
| 232 | ---> Configuring netcdf-fortran |
|---|
| 233 | DEBUG: Preferred compilers: clang macports-clang-15 macports-clang-14 macports-clang-13 macports-clang-12 macports-clang-11 macports-clang-10 macports-clang-9.0 macports-clang-8.0 macports-clang-7.0 macports-clang-6.0 macports-clang-5.0 macports-clang-3.7 macports-clang-3.4 |
|---|
| 234 | DEBUG: Using compiler 'Xcode Clang' |
|---|
| 235 | DEBUG: Executing proc-pre-org.macports.configure-configure-0 |
|---|
| 236 | DEBUG: Active variants check for source-type install considers depends_fetch depends_extract depends_lib depends_build depends_run: netcdf libgcc gcc12 |
|---|
| 237 | DEBUG: Executing proc-pre-org.macports.configure-configure-1 |
|---|
| 238 | DEBUG: compilers.enforce_c list: |
|---|
| 239 | DEBUG: compilers.enforce_fortran list: |
|---|
| 240 | DEBUG: compilers.enforce_some_fortran list: |
|---|
| 241 | DEBUG: Executing proc-pre-org.macports.configure-configure-2 |
|---|
| 242 | DEBUG: Executing org.macports.configure (netcdf-fortran) |
|---|
| 243 | DEBUG: Environment: |
|---|
| 244 | CC='/usr/bin/clang' |
|---|
| 245 | CC_PRINT_OPTIONS='YES' |
|---|
| 246 | CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/.CC_PRINT_OPTIONS' |
|---|
| 247 | CFLAGS='-pipe -Os -fno-common -arch x86_64' |
|---|
| 248 | CPATH='/opt/local/include' |
|---|
| 249 | CPPFLAGS='-I/opt/local/include -DNDEBUG -DpgiFortran' |
|---|
| 250 | CXX='/usr/bin/clang++' |
|---|
| 251 | CXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64' |
|---|
| 252 | DEVELOPER_DIR='/Library/Developer/CommandLineTools' |
|---|
| 253 | F77='/opt/local/bin/gfortran-mp-12' |
|---|
| 254 | F90='/opt/local/bin/gfortran-mp-12' |
|---|
| 255 | F90FLAGS='-pipe -Os -fallow-argument-mismatch -m64' |
|---|
| 256 | FC='/opt/local/bin/gfortran-mp-12' |
|---|
| 257 | FCFLAGS='-pipe -Os -fallow-argument-mismatch -m64' |
|---|
| 258 | FFLAGS='-pipe -Os -fallow-argument-mismatch -m64' |
|---|
| 259 | INSTALL='/usr/bin/install -c' |
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| 260 | LDFLAGS='-L/opt/local/lib -Wl,-headerpad_max_install_names -Wl,-rpath,/opt/local/lib/libgcc -arch x86_64' |
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| 261 | LIBRARY_PATH='/opt/local/lib' |
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| 262 | MACOSX_DEPLOYMENT_TARGET='10.9' |
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| 263 | OBJC='/usr/bin/clang' |
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| 264 | OBJCFLAGS='-pipe -Os -arch x86_64' |
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| 265 | OBJCXX='/usr/bin/clang++' |
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| 266 | OBJCXXFLAGS='-pipe -Os -stdlib=libc++ -arch x86_64' |
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| 267 | Executing: cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/netcdf-fortran-4.6.1" && ./configure --prefix=/opt/local |
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| 268 | DEBUG: system: cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/netcdf-fortran-4.6.1" && ./configure --prefix=/opt/local |
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| 269 | configure: netCDF-Fortran 4.6.1 |
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| 270 | checking build system type... x86_64-apple-darwin13.4.0 |
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| 271 | checking host system type... x86_64-apple-darwin13.4.0 |
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| 272 | checking target system type... x86_64-apple-darwin13.4.0 |
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| 273 | checking for a BSD-compatible install... /usr/bin/install -c |
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| 274 | checking whether build environment is sane... yes |
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| 275 | checking for a race-free mkdir -p... ./install-sh -c -d |
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| 276 | checking for gawk... no |
|---|
| 277 | checking for mawk... no |
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| 278 | checking for nawk... no |
|---|
| 279 | checking for awk... awk |
|---|
| 280 | checking whether make sets $(MAKE)... yes |
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| 281 | checking whether make supports nested variables... yes |
|---|
| 282 | checking whether to enable maintainer-specific portions of Makefiles... no |
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| 283 | configure: checking user options |
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| 284 | checking whether make supports the include directive... yes (GNU style) |
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| 285 | checking for gcc... /usr/bin/clang |
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| 286 | checking whether the C compiler works... yes |
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| 287 | checking for C compiler default output file name... a.out |
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| 288 | checking for suffix of executables... |
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| 289 | checking whether we are cross compiling... no |
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| 290 | checking for suffix of object files... o |
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| 291 | checking whether the compiler supports GNU C... yes |
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| 292 | checking whether /usr/bin/clang accepts -g... yes |
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| 293 | checking for /usr/bin/clang option to enable C11 features... -std=gnu11 |
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| 294 | checking whether /usr/bin/clang -std=gnu11 understands -c and -o together... yes |
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| 295 | checking dependency style of /usr/bin/clang -std=gnu11... gcc3 |
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| 296 | checking if netCDF was built with CDF5... yes |
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| 297 | checking if netCDF was built with Zstandard compression... yes |
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| 298 | configure: WARNING: |
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| 299 | configure: WARNING: ------------------------------------------ |
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| 300 | configure: WARNING: libnetcdf was built with zstd support, but HDF5_PLUGIN_PATH is not set. Either set the HDF5_PLUGIN_PATH environmental variable if zstandard tests fail, or use --disable-zstandard-plugin when running configure. |
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| 301 | configure: WARNING: ------------------------------------------ |
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| 302 | configure: WARNING: |
|---|
| 303 | checking if netCDF was built with pnetcdf... no |
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| 304 | checking if netCDF was built with HDF5 parallel I/O features... no |
|---|
| 305 | checking if netCDF was built with any parallel I/O features... no |
|---|
| 306 | checking if netCDF-fortran should be built with HDF5 parallel I/O features... no |
|---|
| 307 | checking if netCDF was built with support for szip writes... no |
|---|
| 308 | checking if netCDF was built with support for quantize... yes |
|---|
| 309 | checking for valgrind... no |
|---|
| 310 | checking whether parallel IO tests should be run... no |
|---|
| 311 | checking whether a user specified program to run mpi programs... mpiexec |
|---|
| 312 | checking whether netCDF documentation should be generated... no |
|---|
| 313 | checking for doxygen... no |
|---|
| 314 | configure: WARNING: Doxygen not found - documentation will not be built |
|---|
| 315 | checking for dot... no |
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| 316 | configure: WARNING: dot not found - will use simple charts in documentation |
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| 317 | configure: finding C compiler |
|---|
| 318 | checking for gcc... (cached) /usr/bin/clang |
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| 319 | checking whether the compiler supports GNU C... (cached) yes |
|---|
| 320 | checking whether /usr/bin/clang accepts -g... (cached) yes |
|---|
| 321 | checking for /usr/bin/clang option to enable C11 features... (cached) -std=gnu11 |
|---|
| 322 | checking whether /usr/bin/clang -std=gnu11 understands -c and -o together... (cached) yes |
|---|
| 323 | checking dependency style of /usr/bin/clang -std=gnu11... (cached) gcc3 |
|---|
| 324 | checking for an ANSI C-conforming const... yes |
|---|
| 325 | checking for a sed that does not truncate output... /usr/bin/sed |
|---|
| 326 | configure: finding Fortran compiler |
|---|
| 327 | checking whether the compiler supports GNU Fortran... yes |
|---|
| 328 | checking whether /opt/local/bin/gfortran-mp-12 accepts -g... yes |
|---|
| 329 | checking whether the compiler supports GNU Fortran 77... yes |
|---|
| 330 | checking whether /opt/local/bin/gfortran-mp-12 accepts -g... yes |
|---|
| 331 | checking whether Fortran compiler is checked for ISO_C_BINDING support... yes |
|---|
| 332 | checking for Fortran flag to compile .f90 files... none |
|---|
| 333 | checking fortran 90 modules inclusion flag... -I |
|---|
| 334 | checking if Fortran compiler supports Fortran 2003 ISO_C_BINDING... yes |
|---|
| 335 | checking if Fortran compiler supports Fortran 2008 ISO_FORTRAN_ENV additions... yes |
|---|
| 336 | checking if Fortran compiler supports TS29113 standard extension... yes |
|---|
| 337 | checking if Fortran compiler supports allow-mismatch flag... yes |
|---|
| 338 | checking if Fortran compiler supports mismatch_all flag... no |
|---|
| 339 | checking whether fortran type sizes should be checked... yes |
|---|
| 340 | checking whether large file (> 2GB) tests should be run... no |
|---|
| 341 | checking whether benchmarks should be run... yes |
|---|
| 342 | checking where to put large temp files if large file tests are run... . |
|---|
| 343 | configure: setting up libtool |
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| 344 | checking how to print strings... printf |
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| 345 | checking for a sed that does not truncate output... (cached) /usr/bin/sed |
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| 346 | checking for grep that handles long lines and -e... /usr/bin/grep |
|---|
| 347 | checking for egrep... /usr/bin/grep -E |
|---|
| 348 | checking for fgrep... /usr/bin/grep -F |
|---|
| 349 | checking for ld used by /usr/bin/clang -std=gnu11... /Library/Developer/CommandLineTools/usr/bin/ld |
|---|
| 350 | checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld... no |
|---|
| 351 | checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm |
|---|
| 352 | checking the name lister (/opt/local/bin/nm) interface... BSD nm |
|---|
| 353 | checking whether ln -s works... yes |
|---|
| 354 | checking the maximum length of command line arguments... 196608 |
|---|
| 355 | checking how to convert x86_64-apple-darwin13.4.0 file names to x86_64-apple-darwin13.4.0 format... func_convert_file_noop |
|---|
| 356 | checking how to convert x86_64-apple-darwin13.4.0 file names to toolchain format... func_convert_file_noop |
|---|
| 357 | checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files... -r |
|---|
| 358 | checking for file... file |
|---|
| 359 | checking for objdump... no |
|---|
| 360 | checking how to recognize dependent libraries... pass_all |
|---|
| 361 | checking for dlltool... no |
|---|
| 362 | checking how to associate runtime and link libraries... printf %s\n |
|---|
| 363 | checking for ar... ar |
|---|
| 364 | checking for archiver @FILE support... no |
|---|
| 365 | checking for strip... strip |
|---|
| 366 | checking for ranlib... ranlib |
|---|
| 367 | checking command to parse /opt/local/bin/nm output from /usr/bin/clang -std=gnu11 object... ok |
|---|
| 368 | checking for sysroot... no |
|---|
| 369 | checking for a working dd... /bin/dd |
|---|
| 370 | checking how to truncate binary pipes... /bin/dd bs=4096 count=1 |
|---|
| 371 | checking for mt... no |
|---|
| 372 | checking if : is a manifest tool... no |
|---|
| 373 | checking for dsymutil... dsymutil |
|---|
| 374 | checking for nmedit... nmedit |
|---|
| 375 | checking for lipo... lipo |
|---|
| 376 | checking for otool... otool |
|---|
| 377 | checking for otool64... no |
|---|
| 378 | checking for -single_module linker flag... yes |
|---|
| 379 | checking for -exported_symbols_list linker flag... yes |
|---|
| 380 | checking for -force_load linker flag... yes |
|---|
| 381 | checking for stdio.h... yes |
|---|
| 382 | checking for stdlib.h... yes |
|---|
| 383 | checking for string.h... yes |
|---|
| 384 | checking for inttypes.h... yes |
|---|
| 385 | checking for stdint.h... yes |
|---|
| 386 | checking for strings.h... yes |
|---|
| 387 | checking for sys/stat.h... yes |
|---|
| 388 | checking for sys/types.h... yes |
|---|
| 389 | checking for unistd.h... yes |
|---|
| 390 | checking for sys/time.h... yes |
|---|
| 391 | checking for dlfcn.h... yes |
|---|
| 392 | checking for objdir... .libs |
|---|
| 393 | checking if /usr/bin/clang -std=gnu11 supports -fno-rtti -fno-exceptions... yes |
|---|
| 394 | checking for /usr/bin/clang -std=gnu11 option to produce PIC... -fno-common -DPIC |
|---|
| 395 | checking if /usr/bin/clang -std=gnu11 PIC flag -fno-common -DPIC works... yes |
|---|
| 396 | checking if /usr/bin/clang -std=gnu11 static flag -static works... no |
|---|
| 397 | checking if /usr/bin/clang -std=gnu11 supports -c -o file.o... yes |
|---|
| 398 | checking if /usr/bin/clang -std=gnu11 supports -c -o file.o... (cached) yes |
|---|
| 399 | checking whether the /usr/bin/clang -std=gnu11 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes |
|---|
| 400 | checking dynamic linker characteristics... darwin13.4.0 dyld |
|---|
| 401 | checking how to hardcode library paths into programs... immediate |
|---|
| 402 | checking whether stripping libraries is possible... yes |
|---|
| 403 | checking if libtool supports shared libraries... yes |
|---|
| 404 | checking whether to build shared libraries... yes |
|---|
| 405 | checking whether to build static libraries... yes |
|---|
| 406 | checking if libtool supports shared libraries... yes |
|---|
| 407 | checking whether to build shared libraries... yes |
|---|
| 408 | checking whether to build static libraries... yes |
|---|
| 409 | checking for /opt/local/bin/gfortran-mp-12 option to produce PIC... -fno-common |
|---|
| 410 | checking if /opt/local/bin/gfortran-mp-12 PIC flag -fno-common works... yes |
|---|
| 411 | checking if /opt/local/bin/gfortran-mp-12 static flag -static works... no |
|---|
| 412 | checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... yes |
|---|
| 413 | checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... (cached) yes |
|---|
| 414 | checking whether the /opt/local/bin/gfortran-mp-12 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes |
|---|
| 415 | checking dynamic linker characteristics... darwin13.4.0 dyld |
|---|
| 416 | checking how to hardcode library paths into programs... immediate |
|---|
| 417 | checking if libtool supports shared libraries... yes |
|---|
| 418 | checking whether to build shared libraries... yes |
|---|
| 419 | checking whether to build static libraries... yes |
|---|
| 420 | checking for /opt/local/bin/gfortran-mp-12 option to produce PIC... -fno-common |
|---|
| 421 | checking if /opt/local/bin/gfortran-mp-12 PIC flag -fno-common works... yes |
|---|
| 422 | checking if /opt/local/bin/gfortran-mp-12 static flag -static works... no |
|---|
| 423 | checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... yes |
|---|
| 424 | checking if /opt/local/bin/gfortran-mp-12 supports -c -o file.o... (cached) yes |
|---|
| 425 | checking whether the /opt/local/bin/gfortran-mp-12 linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries... yes |
|---|
| 426 | checking dynamic linker characteristics... darwin13.4.0 dyld |
|---|
| 427 | checking how to hardcode library paths into programs... immediate |
|---|
| 428 | configure: finding other utilities |
|---|
| 429 | configure: trying to set fortran flags for this platform |
|---|
| 430 | checking what FC is set to... /opt/local/bin/gfortran-mp-12 |
|---|
| 431 | checking for special C compiler options needed for large files... no |
|---|
| 432 | checking for _FILE_OFFSET_BITS value needed for large files... no |
|---|
| 433 | checking for /opt/local/bin/nm... /opt/local/bin/nm |
|---|
| 434 | checking nm flags... |
|---|
| 435 | checking for C-equivalent to Fortran routine "SUB"... sub_ |
|---|
| 436 | checking for Fortran "byte"... yes |
|---|
| 437 | checking for Fortran "integer*2"... yes |
|---|
| 438 | checking for Fortran "integer*8"... yes |
|---|
| 439 | checking if Fortran "byte" is C "signed char"... yes |
|---|
| 440 | checking if Fortran "byte" is C "short"... no |
|---|
| 441 | checking if Fortran "byte" is C "int"... no |
|---|
| 442 | checking if Fortran "byte" is C "long"... no |
|---|
| 443 | checking if Fortran "integer*2" is C "short"... yes |
|---|
| 444 | checking if Fortran "integer*2" is C "int"... no |
|---|
| 445 | checking if Fortran "integer*2" is C "long"... no |
|---|
| 446 | checking if Fortran "integer*8" is C "short"... no |
|---|
| 447 | checking if Fortran "integer*8" is C "int"... no |
|---|
| 448 | checking if Fortran "integer*8" is C "long long"... yes |
|---|
| 449 | checking if Fortran "integer" is C "int"... yes |
|---|
| 450 | checking if Fortran "real" is C "float"... yes |
|---|
| 451 | checking if Fortran "doubleprecision" is C "double"... yes |
|---|
| 452 | checking for Fortran-equivalent to netCDF "byte"... byte |
|---|
| 453 | checking for Fortran-equivalent to netCDF "short"... integer*2 |
|---|
| 454 | configure: checking types, headers, and functions |
|---|
| 455 | checking for floor in -lm... yes |
|---|
| 456 | checking for library containing dlopen... none required |
|---|
| 457 | checking for netcdf.h... yes |
|---|
| 458 | checking for library containing nc_open... -lnetcdf |
|---|
| 459 | checking for nc_def_opaque... yes |
|---|
| 460 | checking for nccreate... yes |
|---|
| 461 | checking for nc_set_log_level... yes |
|---|
| 462 | checking for oc_open... yes |
|---|
| 463 | checking for nc_def_var_szip... yes |
|---|
| 464 | checking netCDF logging present... yes |
|---|
| 465 | checking netCDF v2 API present... yes |
|---|
| 466 | checking netCDF-4 present... no |
|---|
| 467 | checking whether to test the filter API... no |
|---|
| 468 | checking for stdlib.h... (cached) yes |
|---|
| 469 | checking for sys/types.h... (cached) yes |
|---|
| 470 | checking for sys/param.h... yes |
|---|
| 471 | checking for locale.h... yes |
|---|
| 472 | checking for stdio.h... (cached) yes |
|---|
| 473 | checking for stdarg.h... yes |
|---|
| 474 | checking for errno.h... yes |
|---|
| 475 | checking for ctype.h... yes |
|---|
| 476 | checking for fcntl.h... yes |
|---|
| 477 | checking for malloc.h... no |
|---|
| 478 | checking for stdlib.h... (cached) yes |
|---|
| 479 | checking for string.h... (cached) yes |
|---|
| 480 | checking for strings.h... (cached) yes |
|---|
| 481 | checking for unistd.h... (cached) yes |
|---|
| 482 | checking for sys/stat.h... (cached) yes |
|---|
| 483 | checking for getopt.h... yes |
|---|
| 484 | checking for sys/time.h... (cached) yes |
|---|
| 485 | checking for sys/resource.h... yes |
|---|
| 486 | checking for dirent.h that defines DIR... yes |
|---|
| 487 | checking for library containing opendir... none required |
|---|
| 488 | checking for egrep... (cached) /usr/bin/grep -E |
|---|
| 489 | checking for sys/wait.h that is POSIX.1 compatible... yes |
|---|
| 490 | checking for vprintf... yes |
|---|
| 491 | checking for _Bool... yes |
|---|
| 492 | checking for stdbool.h that conforms to C99... yes |
|---|
| 493 | checking for size_t... yes |
|---|
| 494 | checking for working alloca.h... yes |
|---|
| 495 | checking for alloca... yes |
|---|
| 496 | checking for size_t... (cached) yes |
|---|
| 497 | checking for off_t... yes |
|---|
| 498 | checking for ssize_t... yes |
|---|
| 499 | checking for ptrdiff_t... yes |
|---|
| 500 | checking for uchar... no |
|---|
| 501 | checking for longlong... no |
|---|
| 502 | checking whether char is unsigned... no |
|---|
| 503 | checking size of short... 0 |
|---|
| 504 | checking size of int... 0 |
|---|
| 505 | checking size of long... 0 |
|---|
| 506 | checking size of float... 0 |
|---|
| 507 | checking size of double... 0 |
|---|
| 508 | checking size of off_t... configure: error: in `/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/netcdf-fortran-4.6.1': |
|---|
| 509 | configure: error: cannot compute sizeof (off_t) |
|---|
| 510 | See `config.log' for more details |
|---|
| 511 | Command failed: cd "/opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/netcdf-fortran-4.6.1" && ./configure --prefix=/opt/local |
|---|
| 512 | Exit code: 77 |
|---|
| 513 | Error: Failed to configure netcdf-fortran: consult /opt/local/var/macports/build/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/work/netcdf-fortran-4.6.1/config.log |
|---|
| 514 | Error: Failed to configure netcdf-fortran: configure failure: command execution failed |
|---|
| 515 | DEBUG: Error code: NONE |
|---|
| 516 | DEBUG: Backtrace: configure failure: command execution failed |
|---|
| 517 | while executing |
|---|
| 518 | "$procedure $targetname" |
|---|
| 519 | Error: See /opt/local/var/macports/logs/_opt_bblocal_var_buildworker_ports_build_ports_science_netcdf-fortran/netcdf-fortran/main.log for details. |
|---|
| 520 | Error: Follow https://guide.macports.org/#project.tickets if you believe there is a bug. |
|---|
| 521 | Error: Processing of port netcdf-fortran failed |
|---|
| 522 | Build of 'netcdf-fortran' failed. |
|---|
| 523 | ./mpbb/mpbb: error: `install-port' failed to run successfully |
|---|
