Building cdf fails with "Undefined symbols" error

[jks@…]

This is on OS X version 10.4.10 on a MacBook Pro. MacPorts couldn't download cdf, but I found the file on the NASA web site, and the checksum verifies. Here's a log of "sudo port -d install cdf":

DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/science/cdf
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/cdf
DEBUG: Requested variant darwin is not provided by port cdf.
DEBUG: Requested variant i386 is not provided by port cdf.
DEBUG: Requested variant macosx is not provided by port cdf.
DEBUG: Executing variant darwin_i386 provides darwin_i386
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/lang/gcc42
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/lang/gcc42
DEBUG: Requested variant darwin is not provided by port gcc42.
DEBUG: Requested variant i386 is not provided by port gcc42.
DEBUG: Requested variant macosx is not provided by port gcc42.
DEBUG: Executing variant darwin_8 provides darwin_8
DEBUG: Searching for dependency: gcc42
DEBUG: Found Dependency: receipt exists for gcc42
DEBUG: Executing org.macports.main (cdf)
--->  Fetching cdf
DEBUG: Executing org.macports.fetch (cdf)
--->  Verifying checksum(s) for cdf
DEBUG: Executing org.macports.checksum (cdf)
--->  Checksumming cdf31-dist-all.tar.gz
DEBUG: Correct (sha1) checksum for cdf31-dist-all.tar.gz
--->  Extracting cdf
DEBUG: Executing org.macports.extract (cdf)
--->  Extracting cdf31-dist-all.tar.gz
DEBUG: setting option extract.args to /opt/local/var/macports/distfiles/cdf/cdf31-dist-all.tar.gz
DEBUG: Environment: 
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_cdf/work" && gzip -dc /opt/local/var/macports/distfiles/cdf/cdf31-dist-all.tar.gz | /usr/bin/gnutar --no-same-owner -xf -'
DEBUG: Executing org.macports.patch (cdf)
--->  Applying patches to cdf
--->  Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/cdf/files/patch-Makefile
DEBUG: Environment: 
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_cdf/work/cdf31-dist" && patch -p0'
patching file Makefile
--->  Configuring cdf
DEBUG: Executing org.macports.configure (cdf)
--->  Building cdf with target all
DEBUG: Executing org.macports.build (cdf)
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdflib.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfcre.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfope.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfclo.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfdel.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfsel.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfcon.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfget.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfmisc2.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfread.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfwrite.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfhyper.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c epochuf.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c dirutils.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfput1.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfput2.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfcsi.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdffsi.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdffii.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdftext.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfed.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfstr.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfvalid.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfmem.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c vstream.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c epochu.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfmisc3.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfhuff.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfrle.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfmisc1.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfalloc.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfgzip.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfalloc64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfdel64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfmisc2_64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfread64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfclo64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfget64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfmisc3_64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfsel64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfcon64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfput1_64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfwrite64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfcre64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfmisc1_64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfput2_64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c vstream64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfhyper64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfrle64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfhuff64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfgzip64.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdffsi2.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdffsi3.c
ar rc libcdf.a cdflib.o cdfcre.o cdfope.o cdfclo.o cdfdel.o cdfsel.o cdfcon.o cdfget.o cdfmisc2.o cdfread.o cdfwrite.o cdfhyper.o epochuf.o dirutils.o cdfput1.o cdfput2.o cdfcsi.o cdffsi.o cdffii.o cdftext.o cdfed.o cdfstr.o cdfvalid.o cdfmem.o vstream.o epochu.o cdfmisc3.o cdfhuff.o cdfrle.o cdfmisc1.o cdfalloc.o cdfgzip.o cdfalloc64.o cdfdel64.o cdfmisc2_64.o cdfread64.o cdfclo64.o cdfget64.o cdfmisc3_64.o cdfsel64.o cdfcon64.o cdfput1_64.o cdfwrite64.o cdfcre64.o cdfmisc1_64.o cdfput2_64.o vstream64.o cdfhyper64.o cdfrle64.o cdfhuff64.o cdfgzip64.o cdffsi2.o cdffsi3.o
ranlib libcdf.a
libtool -syslibroot /Developer/SDKs/MacOSX10.4u.sdk -arch_only i386 -dynamic -o libcdf.dylib cdflib.o cdfcre.o cdfope.o cdfclo.o cdfdel.o cdfsel.o cdfcon.o cdfget.o cdfmisc2.o cdfread.o cdfwrite.o cdfhyper.o epochuf.o dirutils.o cdfput1.o cdfput2.o cdfcsi.o cdffsi.o cdffii.o cdftext.o cdfed.o cdfstr.o cdfvalid.o cdfmem.o vstream.o epochu.o cdfmisc3.o cdfhuff.o cdfrle.o cdfmisc1.o cdfalloc.o cdfgzip.o cdfalloc64.o cdfdel64.o cdfmisc2_64.o cdfread64.o cdfclo64.o cdfget64.o cdfmisc3_64.o cdfsel64.o cdfcon64.o cdfput1_64.o cdfwrite64.o cdfcre64.o cdfmisc1_64.o cdfput2_64.o vstream64.o cdfhyper64.o cdfrle64.o cdfhuff64.o cdfgzip64.o cdffsi2.o cdffsi3.o -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfxp.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfxp1.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfxp2.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c windoz.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c widgets.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c toolbox1.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c toolbox3.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdfxp cdfxp.o cdfxp1.o cdfxp2.o windoz.o widgets.o toolbox1.o toolbox3.o ../lib/libcdf.a -lcurses -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfedit.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfedit1.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfedit2.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfedit3.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdfedit cdfedit.o cdfedit1.o cdfedit2.o cdfedit3.o windoz.o widgets.o toolbox1.o toolbox3.o ../lib/libcdf.a -lcurses -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfcvt.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdfcvt cdfcvt.o toolbox1.o toolbox3.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfstats.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfstat1.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfstat2.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdfstats cdfstats.o cdfstat1.o cdfstat2.o toolbox1.o toolbox3.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfcmp.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdfcmp cdfcmp.o toolbox1.o toolbox3.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdf2skt.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdf2skt cdf2skt.o toolbox1.o toolbox3.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c skt2cdf.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o skt2cdf skt2cdf.o toolbox1.o toolbox3.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfinq.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdfinq cdfinq.o toolbox1.o toolbox3.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c cdfdump.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o cdfdump cdfdump.o toolbox1.o toolbox3.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c qst2c.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2c qst2c.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c qst2ic.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2ic qst2ic.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c qst2icEPOCH16.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2icEPOCH16 qst2icEPOCH16.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -Di386 -D__MACH__ -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -I../include -c qst2cNew.c
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2cNew qst2cNew.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2cS qst2c.o ../lib/libcdf.dylib -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2icS qst2ic.o ../lib/libcdf.dylib -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2icEPOCH16S qst2ic.o ../lib/libcdf.dylib -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gcc-mp-4.2 -isysroot/Developer/SDKs/MacOSX10.4u.sdk -o qst2cNewS qst2cNew.o ../lib/libcdf.dylib -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc
gfortran-mp-4.2 -w -fsecond-underscore -c qst2f.f
gfortran-mp-4.2 -o qst2f qst2f.o ../lib/libcdf.a -L/Developer/SDKs/MacOSX10.4u.sdk/usr/lib -L/usr/lib/gcc/i686-apple-darwin8/4.0.1 -lm -lc -lgcc -lSystemStubs
/usr/bin/ld: warning prebinding disabled because dependent library: /opt/local/lib/gcc42/libgfortran.2.dylib is not prebound
/usr/bin/ld: Undefined symbols:
_cdf_attr_create__
_cdf_attr_entry_inquire__
_cdf_attr_get__
_cdf_attr_inquire__
_cdf_attr_num__
_cdf_attr_put__
_cdf_attr_rename__
_cdf_close__
_cdf_create__
_cdf_delete__
_cdf_doc__
_cdf_error__
_cdf_inquire__
_cdf_open__
_cdf_var_close__
_cdf_var_create__
_cdf_var_get__
_cdf_var_hyper_get__
_cdf_var_hyper_put__
_cdf_var_inquire__
_cdf_var_num__
_cdf_var_put__
_cdf_var_rename__
_compute_epoch__
_encode_epoch1__
_encode_epoch2__
_encode_epoch3__
_encode_epoch__
_epoch_breakdown__
_parse_epoch1__
_parse_epoch2__
_parse_epoch3__
_parse_epoch__
collect2: ld returned 1 exit status
make[1]: *** [qst2f] Error 1
make: *** [all.build] Error 2
Error: Target org.macports.build returned: shell command "make OS=macosx ENV=i386 FORTRAN=yes FC=gfortran-mp-4.2 all" returned error 2
Command output: _cdf_attr_rename__
_cdf_close__
_cdf_create__
_cdf_delete__
_cdf_doc__
_cdf_error__
_cdf_inquire__
_cdf_open__
_cdf_var_close__
_cdf_var_create__
_cdf_var_get__
_cdf_var_hyper_get__
_cdf_var_hyper_put__
_cdf_var_inquire__
_cdf_var_num__
_cdf_var_put__
_cdf_var_rename__
_compute_epoch__
_encode_epoch1__
_encode_epoch2__
_encode_epoch3__
_encode_epoch__
_epoch_breakdown__
_parse_epoch1__
_parse_epoch2__
_parse_epoch3__
_parse_epoch__
collect2: ld returned 1 exit status
make[1]: *** [qst2f] Error 1
make: *** [all.build] Error 2

Warning: the following items did not execute (for cdf): org.macports.activate org.macports.build org.macports.destroot org.macports.install
Error: Status 1 encountered during processing.

[adfernandes (Andrew Fernandes)]

The problem appears that the cdf library is built on purpose to use that (swear,curse) convention of two underscores in fortran.

Attached is a patch. Building OpenDX with CDF works fine with this patch.

[adfernandes (Andrew Fernandes)]

builds cdf with '-fno-second-underscore' for compatibility with opendx

[jmroot (Joshua Root)]

Assigning to maintainer.

[jmroot (Joshua Root)]

Was this fixed by r33662?

[jks@…]

It builds now, so I suppose the answer is yes. In the meantime I've upgraded to Leopard, so a lot of other things have changed as well and I can't be sure what specifically fixed the problem.

[(none)]

Milestone Port Bugs deleted