openmpi 1.3.1 build error

[mf2k (Frank Schima)]

I see the following build error with openmpi 1.3.1:

Running Mac OS X 10.5.6 Intel. Xcode 3.1.2.

Building with the g95 variant works though.

$ sudo port install openmpi
--->  Fetching openmpi
--->  Verifying checksum(s) for openmpi
--->  Extracting openmpi
--->  Configuring openmpi
--->  Building openmpi
Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build" && make all " returned error 2
Command output: /bin/sh ../../../../libtool --tag=CC   --mode=link /usr/bin/gcc-4.0  -DNDEBUG -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden -module -avoid-version -export-dynamic -L/opt/local/lib  -o mca_routed_linear.la -rpath /opt/local/lib/openmpi routed_linear.lo routed_linear_component.lo  -lutil  
libtool: link: ar cru .libs/mca_routed_linear.a  routed_linear.o routed_linear_component.o
libtool: link: ranlib .libs/mca_routed_linear.a
libtool: link: ( cd ".libs" && rm -f "mca_routed_linear.la" && ln -s "../mca_routed_linear.la" "mca_routed_linear.la" )
Making all in tools/orte-checkpoint
make[2]: Nothing to be done for `all'.
Making all in tools/orte-clean
depbase=`echo orte-clean.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
	/usr/bin/gcc-4.0 -DHAVE_CONFIG_H -I. -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools/orte-clean -I../../../opal/include -I../../../orte/include -I../../../ompi/include -I../../../opal/mca/paffinity/linux/plpa/src/libplpa   -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1 -I../../.. -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/opal/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/ompi/include -I/opt/local/include -D_REENTRANT  -DNDEBUG -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden -MT orte-clean.o -MD -MP -MF $depbase.Tpo -c -o orte-clean.o /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools/orte-clean/orte-clean.c &&\
	mv -f $depbase.Tpo $depbase.Po
/bin/sh ../../../libtool --tag=CC   --mode=link /usr/bin/gcc-4.0  -DNDEBUG -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden  -export-dynamic -L/opt/local/lib  -o orte-clean orte-clean.o ../../../orte/libopen-rte.la -lutil  
libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -o orte-clean orte-clean.o  -L/opt/local/lib ../../../orte/.libs/libopen-rte.a /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build/opal/.libs/libopen-pal.a -lutil
Creating orte-clean.1 man page...
Making all in tools/orte-iof
depbase=`echo orte-iof.o | sed 's|[^/]*$|.deps/&|;s|\.o$||'`;\
	/usr/bin/gcc-4.0 -DHAVE_CONFIG_H -I. -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools/orte-iof -I../../../opal/include -I../../../orte/include -I../../../ompi/include -I../../../opal/mca/paffinity/linux/plpa/src/libplpa   -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1 -I../../.. -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/opal/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/include -I/opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/ompi/include -I/opt/local/include -D_REENTRANT  -DNDEBUG -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden -MT orte-iof.o -MD -MP -MF $depbase.Tpo -c -o orte-iof.o /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/openmpi-1.3.1/orte/tools/orte-iof/orte-iof.c &&\
	mv -f $depbase.Tpo $depbase.Po
/bin/sh ../../../libtool --tag=CC   --mode=link /usr/bin/gcc-4.0  -DNDEBUG -O2 -finline-functions -fno-strict-aliasing  -fvisibility=hidden  -export-dynamic -L/opt/local/lib  -o orte-iof orte-iof.o ../../../orte/libopen-rte.la -lutil  
libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o  -L/opt/local/lib ../../../orte/.libs/libopen-rte.a /opt/local/var/macports/build/_opt_local_var_macports_sources_svn.macports.org_trunk_dports_science_openmpi/work/build/opal/.libs/libopen-pal.a -lutil
Undefined symbols:
  "_orte_iof", referenced from:
      _orte_iof$non_lazy_ptr in orte-iof.o
  "_orte_routed", referenced from:
      _orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o)
      _orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)
ld: symbol(s) not found
collect2: ld returned 1 exit status
make[2]: *** [orte-iof] Error 1
make[1]: *** [all-recursive] Error 1
make: *** [all-recursive] Error 1

Error: Status 1 encountered during processing.

[raphael@…]

Cc Me!

[mf2k (Frank Schima)]

It looks like this problem is still happening with version 1.3.2.

[mf2k (Frank Schima)]

Cc'ing reporter of duplicate #19422.

[(none)]

Milestone Port Bugs deleted

[lvcargnini@…]

Probelm related.

Why it do not use MacPort Compiler even using gcc_select ?

/bin/sh ../../../libtool --tag=CC --mode=link /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -export-dynamic -L/opt/local/lib -o orte-iof orte-iof.o ../../../orte/libopen-rte.la -lutil libtool: link: /usr/bin/gcc-4.0 -DNDEBUG -O2 -finline-functions -fno-strict-aliasing -fvisibility=hidden -o orte-iof orte-iof.o -L/opt/local/lib ../../../orte/.libs/libopen-rte.a /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_openmpi/work/build/opal/.libs/libopen-pal.a -lutil Undefined symbols:

"_orte_iof", referenced from:

_orte_iof$non_lazy_ptr in orte-iof.o

"_orte_routed", referenced from:

_orte_routed$non_lazy_ptr in libopen-rte.a(hnp_contact.o) _orte_routed$non_lazy_ptr in libopen-rte.a(rml_base_contact.o)

ld: symbol(s) not found collect2: ld returned 1 exit status make[2]: * [orte-iof] Error 1 make[1]: * [all-recursive] Error 1 make: * [all-recursive] Error 1

[mf2k (Frank Schima)]

This is no longer a problem for me with version 1.4.1. At least on Snow Leopard.