Error applying patches when installing mico-2.3.12

[theconquerer@…]

When installing mico I got an error while port tries to apply a patch and where not able to find any solution to this problem.

Here is the debug output:

DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: adding the default universal variant
DEBUG: Requested variant darwin is not provided by port mico.
DEBUG: Requested variant i386 is not provided by port mico.
DEBUG: Requested variant macosx is not provided by port mico.
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/openssl
DEBUG: epoch: in tree: 1 installed: 1
DEBUG: openssl 0.9.8k_0 exists in the ports tree
DEBUG: openssl 0.9.8k_0 +darwin is the latest installed
DEBUG: openssl 0.9.8k_0 +darwin is active
DEBUG: Merging existing variants darwin into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/openssl
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Requested variant i386 is not provided by port openssl.
DEBUG: Requested variant macosx is not provided by port openssl.
DEBUG: Executing variant darwin provides darwin
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/zlib
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: zlib 1.2.3_3 exists in the ports tree
DEBUG: zlib 1.2.3_3  is the latest installed
DEBUG: zlib 1.2.3_3  is active
DEBUG: Merging existing variants  into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/zlib
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Requested variant darwin is not provided by port zlib.
DEBUG: Requested variant i386 is not provided by port zlib.
DEBUG: Requested variant macosx is not provided by port zlib.
DEBUG: No need to upgrade! zlib 1.2.3_3 >= zlib 1.2.3_3
DEBUG: No need to upgrade! openssl 0.9.8k_0 >= openssl 0.9.8k_0
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncurses
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: ncurses 5.7_0 exists in the ports tree
DEBUG: ncurses 5.7_0  is the latest installed
DEBUG: ncurses 5.7_0  is active
DEBUG: Merging existing variants  into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncurses
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Requested variant darwin is not provided by port ncurses.
DEBUG: Requested variant i386 is not provided by port ncurses.
DEBUG: Requested variant macosx is not provided by port ncurses.
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncursesw
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: ncursesw 5.7_0 exists in the ports tree
DEBUG: ncursesw 5.7_0  is the latest installed
DEBUG: ncursesw 5.7_0  is active
DEBUG: Merging existing variants  into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncursesw
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Requested variant darwin is not provided by port ncursesw.
DEBUG: Requested variant i386 is not provided by port ncursesw.
DEBUG: Requested variant macosx is not provided by port ncursesw.
DEBUG: No need to upgrade! ncursesw 5.7_0 >= ncursesw 5.7_0
DEBUG: No need to upgrade! ncurses 5.7_0 >= ncurses 5.7_0
--->  Computing dependencies for mico
DEBUG: Searching for dependency: openssl
DEBUG: Found Dependency: receipt exists for openssl
DEBUG: Searching for dependency: ncurses
DEBUG: Found Dependency: receipt exists for ncurses
DEBUG: Executing org.macports.main (mico)
DEBUG: Skipping completed org.macports.fetch (mico)
DEBUG: Skipping completed org.macports.checksum (mico)
DEBUG: Skipping completed org.macports.extract (mico)
DEBUG: Executing org.macports.patch (mico)
--->  Applying patches to mico
--->  Applying /opt/local/var/macports/distfiles/mico/mico-2.3.12-secfix1.diff
DEBUG: Environment: MACOSX_DEPLOYMENT_TARGET='10.5'
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work/mico" && /usr/bin/patch -p1'
patching file orb/orb.cc
Reversed (or previously applied) patch detected!  Assume -R? [n] 
Apply anyway? [n] 
Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file orb/orb.cc.rej
Error: Target org.macports.patch returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work/mico" && /usr/bin/patch -p1 < '/opt/local/var/macports/distfiles/mico/mico-2.3.12-secfix1.diff'" returned error 1
Command output: patching file orb/orb.cc
Reversed (or previously applied) patch detected!  Assume -R? [n] 
Apply anyway? [n] 
Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file orb/orb.cc.rej

DEBUG: Backtrace: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work/mico" && /usr/bin/patch -p1 < '/opt/local/var/macports/distfiles/mico/mico-2.3.12-secfix1.diff'" returned error 1
Command output: patching file orb/orb.cc
Reversed (or previously applied) patch detected!  Assume -R? [n] 
Apply anyway? [n] 
Skipping patch.
1 out of 1 hunk ignored -- saving rejects to file orb/orb.cc.rej

    while executing
"command_exec patch "" "< '$patch'""
    ("default" arm line 1)
    invoked from within
"switch -- [file extension $patch] {
            .Z -
            .gz {command_exec patch "$gzcat \"$patch\" | (" ")"}
            .bz2 {command_exec p..."
    (procedure "portpatch::patch_main" line 29)
    invoked from within
"$procedure $targetname"
Warning: the following items did not execute (for mico): org.macports.activate org.macports.patch org.macports.configure org.macports.build org.macports.destroot org.macports.install
Error: Status 1 encountered during processing.

[theconquerer@…]

Cc Me!

[theconquerer@…]

As I see it the above error might be a follow-up from this error:

DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: adding the default universal variant
DEBUG: Requested variant darwin is not provided by port mico.
DEBUG: Requested variant i386 is not provided by port mico.
DEBUG: Requested variant macosx is not provided by port mico.
DEBUG: Attempting ln -sf /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico/work
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/openssl
DEBUG: epoch: in tree: 1 installed: 1
DEBUG: openssl 0.9.8l_0 exists in the ports tree
DEBUG: openssl 0.9.8l_0 +darwin is the latest installed
DEBUG: openssl 0.9.8l_0 +darwin is active
DEBUG: Merging existing variants darwin into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/openssl
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Requested variant i386 is not provided by port openssl.
DEBUG: Requested variant macosx is not provided by port openssl.
DEBUG: Executing variant darwin provides darwin
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/zlib
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: zlib 1.2.3_3 exists in the ports tree
DEBUG: zlib 1.2.3_3  is the latest installed
DEBUG: zlib 1.2.3_3  is active
DEBUG: Merging existing variants  into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/zlib
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: adding the default universal variant
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: Requested variant darwin is not provided by port zlib.
DEBUG: Requested variant i386 is not provided by port zlib.
DEBUG: Requested variant macosx is not provided by port zlib.
DEBUG: No need to upgrade! zlib 1.2.3_3 >= zlib 1.2.3_3
DEBUG: No need to upgrade! openssl 0.9.8l_0 >= openssl 0.9.8l_0
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncurses
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: ncurses 5.7_0 exists in the ports tree
DEBUG: ncurses 5.7_0  is the latest installed
DEBUG: ncurses 5.7_0  is active
DEBUG: Merging existing variants  into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncurses
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Requested variant darwin is not provided by port ncurses.
DEBUG: Requested variant i386 is not provided by port ncurses.
DEBUG: Requested variant macosx is not provided by port ncurses.
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncursesw
DEBUG: epoch: in tree: 0 installed: 0
DEBUG: ncursesw 5.7_0 exists in the ports tree
DEBUG: ncursesw 5.7_0  is the latest installed
DEBUG: ncursesw 5.7_0  is active
DEBUG: Merging existing variants  into variants
DEBUG: new fully merged portvariants: 
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/ncursesw
DEBUG: OS Platform: darwin
DEBUG: OS Version: 9.8.0
DEBUG: Mac OS X Version: 10.5
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
DEBUG: Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
DEBUG: universal variant already exists, so not adding the default one
DEBUG: Requested variant darwin is not provided by port ncursesw.
DEBUG: Requested variant i386 is not provided by port ncursesw.
DEBUG: Requested variant macosx is not provided by port ncursesw.
DEBUG: No need to upgrade! ncursesw 5.7_0 >= ncursesw 5.7_0
DEBUG: No need to upgrade! ncurses 5.7_0 >= ncurses 5.7_0
--->  Computing dependencies for mico
DEBUG: Searching for dependency: openssl
DEBUG: Found Dependency: receipt exists for openssl
DEBUG: Searching for dependency: ncurses
DEBUG: Found Dependency: receipt exists for ncurses
DEBUG: Executing org.macports.main (mico)
--->  Fetching mico
DEBUG: Executing org.macports.fetch (mico)
--->  Verifying checksum(s) for mico
DEBUG: Executing org.macports.checksum (mico)
--->  Checksumming mico-2.3.12-secfix1.diff
DEBUG: Correct (md5) checksum for mico-2.3.12-secfix1.diff
DEBUG: Correct (sha1) checksum for mico-2.3.12-secfix1.diff
DEBUG: Correct (rmd160) checksum for mico-2.3.12-secfix1.diff
--->  Checksumming mico-2.3.12.tar.gz
DEBUG: Correct (md5) checksum for mico-2.3.12.tar.gz
DEBUG: Correct (sha1) checksum for mico-2.3.12.tar.gz
DEBUG: Correct (rmd160) checksum for mico-2.3.12.tar.gz
--->  Extracting mico
DEBUG: Executing org.macports.extract (mico)
--->  Extracting mico-2.3.12.tar.gz
DEBUG: setting option extract.args to /opt/local/var/macports/distfiles/mico/mico-2.3.12.tar.gz
DEBUG: Environment: MACOSX_DEPLOYMENT_TARGET='10.5'
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work" && /usr/bin/gzip -dc /opt/local/var/macports/distfiles/mico/mico-2.3.12.tar.gz | /usr/bin/gnutar --no-same-owner -xf -'
DEBUG: Executing org.macports.patch (mico)
--->  Applying patches to mico
--->  Applying /opt/local/var/macports/distfiles/mico/mico-2.3.12-secfix1.diff
DEBUG: Environment: MACOSX_DEPLOYMENT_TARGET='10.5'
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work/mico" && /usr/bin/patch -p1'
patching file orb/orb.cc
--->  Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico/files/patch-mico-shld.def.in.diff
DEBUG: Environment: MACOSX_DEPLOYMENT_TARGET='10.5'
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work/mico" && /usr/bin/patch -p1'
patching file admin/mico-shld.def.in
--->  Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico/files/patch-os-math.h.diff
DEBUG: Environment: MACOSX_DEPLOYMENT_TARGET='10.5'
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work/mico" && /usr/bin/patch -p1'
patching file include/mico/os-math.h
--->  Applying /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico/files/patch-Makefile.diff
DEBUG: Environment: MACOSX_DEPLOYMENT_TARGET='10.5'
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_devel_mico/work/mico" && /usr/bin/patch -p1'
patching file Makefile
DEBUG: Executing proc-post-org.macports.patch-patch-0
DEBUG: couldn't read file "admin/mico-shld.def.in": no such file or directory
    while executing
"exec /usr/bin/sed s,@prefix@,/opt/local,g < admin/mico-shld.def.in >@ file6"
    ("eval" body line 1)
    invoked from within
"eval exec $cmdline"
Error: reinplace: couldn't read file "admin/mico-shld.def.in": no such file or directory
Error: Target org.macports.patch returned: reinplace sed(1) failed
DEBUG: Backtrace: reinplace sed(1) failed
    while executing
"$post $targetname"
Warning: the following items did not execute (for mico): org.macports.activate org.macports.patch org.macports.configure org.macports.build org.macports.destroot org.macports.install
Error: Status 1 encountered during processing.

I was able to fix this error with the attached patch applied to

/opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mico/Portfile

[theconquerer@…]

Patch for the portfile

[roederja]

I updated the port to the new version and also fixed this issue (r60297). However I can only test on Snow Leopard. Please re-open this bug if it doesn't work.