Opened 15 years ago

Closed 14 years ago

#22916 closed defect (fixed)

xinstall fails for Psequin

Reported by: clouseau (John VanDyk) Owned by: mike.thon@…
Priority: Normal Milestone:
Component: ports Version: 1.8.1
Keywords: Cc:
Port: ncbi_tools

Description (last modified by mf2k (Frank Schima))

I made the changes outlined in ticket:22621 and it builds fine, but then It says: 

$ sudo port install ncbi_tools
--->  Computing dependencies for ncbi_tools
--->  Building ncbi_tools
--->  Staging ncbi_tools into destroot
Error: Target org.macports.destroot returned: xinstall: Cannot stat: /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/ncbi/bin/Psequin, No such file or directory
Error: Status 1 encountered during processing.

Change History (4)

comment:1 Changed 15 years ago by mf2k (Frank Schima)

Description: modified (diff)
Owner: changed from macports-tickets@… to mike.thon@…

comment:2 in reply to:  description ; Changed 15 years ago by florent.angly@…

Yes, I can confirm this. I have the same issue.

comment:3 in reply to:  2 Changed 15 years ago by florent.angly@…

Actually, in order to do "port install ncbi_tools" without errors, I had to remove the following names from the "set binaries" line of the Portfile: Psequin sbtedit entrez2 ddv udv psiblast.REAL blast.REAL psiblast_cs.REAL wblast2.REAL blast_cs.REAL wblast2_cs.REAL

comment:4 Changed 14 years ago by jmroot (Joshua Root)

Resolution: → fixed
Status: new → closed

r69604

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