NCBI toolkit not compiling on Snow Leopard

[bkamel@…]

sudo port -d install ncbi_tools 
DEBUG: Found port in file:///opt/local/var/macports/sources/rsync.macports.org/release/ports/science/ncbi_tools
DEBUG: Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/science/ncbi_tools
DEBUG: OS Platform: darwin
DEBUG: OS Version: 10.2.0
DEBUG: Mac OS X Version: 10.6
DEBUG: System Arch: i386
DEBUG: setting option os.universal_supported to yes
DEBUG: org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
DEBUG: org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
DEBUG: not using configure, so not adding the default universal variant
DEBUG: Requested variant darwin is not provided by port ncbi_tools.
DEBUG: Requested variant i386 is not provided by port ncbi_tools.
DEBUG: Requested variant macosx is not provided by port ncbi_tools.
--->  Computing dependencies for ncbi_tools
DEBUG: Executing org.macports.main (ncbi_tools)
DEBUG: Skipping completed org.macports.fetch (ncbi_tools)
DEBUG: Skipping completed org.macports.checksum (ncbi_tools)
DEBUG: Skipping completed org.macports.extract (ncbi_tools)
DEBUG: Skipping completed org.macports.patch (ncbi_tools)
DEBUG: Skipping completed org.macports.configure (ncbi_tools)
--->  Building ncbi_tools
DEBUG: Executing org.macports.build (ncbi_tools)
DEBUG: Environment: MACOSX_DEPLOYMENT_TARGET='10.6'
DEBUG: Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/" && './ncbi/make/makedis.csh' -j2'
Unable to find the file -j2
Error: Target org.macports.build returned: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/" && './ncbi/make/makedis.csh' -j2 " returned error 1
DEBUG: Backtrace: shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_ncbi_tools/work/" && './ncbi/make/makedis.csh' -j2 " returned error 1
    while executing
"command_exec build"
    (procedure "portbuild::build_main" line 9)
    invoked from within
"$procedure $targetname"
Warning: the following items did not execute (for ncbi_tools): org.macports.activate org.macports.build org.macports.destroot org.macports.install
Error: Status 1 encountered during processing.
To report a bug, see <http://guide.macports.org/#project.tickets>

[jmroot (Joshua Root)]

Looks like it just needs use_parallel_build no.

[jan@…]

Cc Me!

[jan@…]

Replying to jmr@…:

Looks like it just needs use_parallel_build no.

How can we get the maintainer to change the Portfile to add use_parallel_build no ?

Changing master_sites ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/CURRENT also seems like a good idea.

But maybe that is my lack of understanding the format, this is my first look at Portfiles.

[jmroot (Joshua Root)]

#22621