not able to install atlas3.8.3

[vivek.menon79@…]

This is what error report looks like:

bash-3.2$ sudo port -v install atlas
--->  Computing dependencies for atlas.
--->  Verifying checksum(s) for atlas
--->  Checksumming atlas3.8.3.tar.bz2
Error: Target org.macports.checksum returned: atlas3.8.3.tar.bz2 does not exist in /opt/local/var/macports/distfiles/atlas
Warning: the following items did not execute (for atlas): org.macports.activate org.macports.checksum org.macports.extract org.macports.patch org.macports.configure org.macports.build org.macports.destroot org.macports.install
Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
Error: Status 1 encountered during processing.
To report a bug, see <http://guide.macports.org/#project.tickets>

bash-3.2$ cat /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
version:1
:debug:main epoch: in tree: 1 installed: 1
:debug:main gcc44 4.4.5_0 exists in the ports tree
:debug:main gcc44 4.4.5_0  is the latest installed
:debug:main gcc44 4.4.5_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/lang/gcc44
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! gcc44 4.4.5_0 >= gcc44 4.4.5_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main gmp 5.0.1_0 exists in the ports tree
:debug:main gmp 5.0.1_0  is the latest installed
:debug:main gmp 5.0.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/gmp
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! gmp 5.0.1_0 >= gmp 5.0.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main mpfr 3.0.0-p8_0 exists in the ports tree
:debug:main mpfr 3.0.0-p8_0  is the latest installed
:debug:main mpfr 3.0.0-p8_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/devel/mpfr
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! mpfr 3.0.0-p8_0 >= mpfr 3.0.0-p8_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main libiconv 1.13.1_0 exists in the ports tree
:debug:main libiconv 1.13.1_0  is the latest installed
:debug:main libiconv 1.13.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/textproc/libiconv
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! libiconv 1.13.1_0 >= libiconv 1.13.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main bzip2 1.0.6_0 exists in the ports tree
:debug:main bzip2 1.0.6_0  is the latest installed
:debug:main bzip2 1.0.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/bzip2
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main gzip 1.4_0 exists in the ports tree
:debug:main gzip 1.4_0  is the latest installed
:debug:main gzip 1.4_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/ports/archivers/gzip
:debug:main OS darwin/10.5.0 (Mac OS X 10.6) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! gzip 1.4_0 >= gzip 1.4_0
:msg:main --->  Computing dependencies for atlas:info:main .:debug:main Searching for dependency: gcc44
:debug:main Found Dependency: receipt exists for gcc44
:debug:main Searching for dependency: bzip2
:debug:main Found Dependency: receipt exists for bzip2
:debug:main Searching for dependency: gzip
:debug:main Found Dependency: receipt exists for gzip
:msg:main 
:debug:main Executing org.macports.main (atlas)
:debug:main Skipping completed org.macports.fetch (atlas)
:msg:main --->  Verifying checksum(s) for atlas
:debug:checksum checksum phase started at Thu Dec  2 12:02:40 EST 2010
:debug:checksum Executing org.macports.checksum (atlas)
:info:checksum --->  Checksumming atlas3.8.3.tar.bz2
:error:checksum Target org.macports.checksum returned: atlas3.8.3.tar.bz2 does not exist in /opt/local/var/macports/distfiles/atlas
:debug:checksum Backtrace: atlas3.8.3.tar.bz2 does not exist in /opt/local/var/macports/distfiles/atlas
    while executing
"$procedure $targetname"
:info:checksum Warning: the following items did not execute (for atlas): org.macports.activate org.macports.checksum org.macports.extract org.macports.patch org.macports.configure org.macports.build org.macports.destroot org.macports.install
:notice:checksum Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log

[ryandesign (Ryan Carsten Schmidt)]

:error:checksum Target org.macports.checksum returned: atlas3.8.3.tar.bz2 does not exist in /opt/local/var/macports/distfiles/atlas

Please try:

sudo port clean --all atlas
port clean --all atlas
sudo port install atlas

This was supposed to have been fixed in MacPorts 1.9.2. Verify you're actually running MacPorts 1.9.2.

[ryandesign (Ryan Carsten Schmidt)]

Did that help?

[vivek.menon79@…]

No, My log fille looks like this:

:info:build    STAGE 2-2-5: GEMV TUNE
:info:build make -f Makefile INSTALL_LOG/sMVRES pre=s 2>&1 | ./xatlas_tee INSTALL_LOG/sMVTUNE.LOG
:info:build       gemvN : chose routine 3:ATL_gemvN_1x1_1a.c written by R. Clint Whaley
:info:build               Yunroll=32, Xunroll=1, using 75 percent of L1
:info:build               Performance = 2988.25 (17.95 of copy matmul, 112.34 of clock)
:info:build       gemvT : chose routine 105:ATL_gemvT_2x16_1.c written by R. Clint Whaley
:info:build               Yunroll=2, Xunroll=16, using 75 percent of L1
:info:build               Performance = 2258.06 (13.56 of copy matmul, 84.89 of clock)
:info:build 
:info:build 
:info:build    STAGE 2-2-6: GER TUNE
:info:build make -f Makefile INSTALL_LOG/sR1RES pre=s 2>&1 | ./xatlas_tee INSTALL_LOG/sR1TUNE.LOG
:info:build make[1]: *** [build] Error 255
:info:build make: *** [build] Error 2
:info:build shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.8.3/build" && /usr/bin/make build " returned error 2
:error:build Target org.macports.build returned: shell command failed (see log for details)
:debug:build Backtrace: shell command failed (see log for details)
    while executing
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"$procedure $targetname"
:info:build Warning: the following items did not execute (for atlas): org.macports.activate org.macports.build org.macports.destroot org.macports.install
:error:build Failed to install atlas
:notice:build Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log

[ryandesign (Ryan Carsten Schmidt)]

Replying to vivek.menon79@…:

Replying to ryandesign@…:

Did that help?

No, My log fille looks like this:

So, in fact, the suggestion did help: you got past the problem in the checksum phase and are now experiencing a new problem, which may be the same as the one described in #26774 or #27640. Attach the complete main.log file so we can see which it is.

[vivek.menon79@…]

The log file is about 11 MB. suggestions on how to attach it when the max limit is 1 MB ??

[mf2k (Frank Schima)]

Replying to vivek.menon79@…:

The log file is about 11 MB. suggestions on how to attach it when the max limit is 1 MB ??

You can compress it with gzip.

[vivek.menon79@…]

I have attached a complete log (zipped). Thanks :) Apparently atlas is a pre-req for installing py26-numpy :(

[ryandesign (Ryan Carsten Schmidt)]

Thanks. Note that you can deselect py26-numpy's atlas variant if you don't want it to use atlas.

sudo port clean py26-numpy
sudo port install py26-numpy -atlas

[ryandesign (Ryan Carsten Schmidt)]

Is this still a problem with atlas 3.9.33?

[Veence (Vincent)]

I close it for now. Reopen it if it is still fails with 3.9.35.