atlas: Undefined symbols save_world rest_world

[moussor@…]

Hi, when I try to upgrade atlas i've got this error :

--->  Computing dependencies for atlas
--->  Building atlas
Error: Target org.macports.build returned: shell command failed (see log for details)
Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log
Error: Unable to upgrade port: 1
To report a bug, see <http://guide.macports.org/#project.tickets>

Is anybody can help me please ?

[moussor@…]

and the log is here : ​http://pastebin.com/a0adxK1z (sorry for the double post)

[trog24 (Frank J. R. Hanstick)]

build log

[trog24 (Frank J. R. Hanstick)]

When trying to upgrade, Atlas failed to build with the following error:

:debug:build Executing proc-post-org.macports.build-build-0
:info:build Undefined symbols:
:info:build   "save_world", referenced from:
:info:build       _ATL_cmvnk__900003 in libatlas.a(ATL_cmvnk__900003.o)
:info:build       _ATL_cmvnk__900003_b0 in libatlas.a(ATL_cmvnk__900003_b0.o)
:info:build   "rest_world", referenced from:
:info:build       _ATL_cmvnk__900003 in libatlas.a(ATL_cmvnk__900003.o)
:info:build       _ATL_cmvnk__900003_b0 in libatlas.a(ATL_cmvnk__900003_b0.o)
:info:build ld: symbol(s) not found
:info:build shell command "cd /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/work/atlas-3.9.37/build/lib &&  ( test ! -e libatlas.a ||  /usr/bin/ld -arch ppc -dynamic -dylib -single_module -dead_strip  -x -all_load -L. -L/opt/local/lib/gcc44/ppc  -L/opt/local/lib/gcc44 -ldylib1.o  -dylib_install_name /opt/local/lib/libatlas.dylib  libatlas.a -o libatlas.dylib  -lSystem  )" returned error 1
:error:build Target org.macports.build returned: shell command failed (see log for details)
:debug:build Backtrace: shell command failed (see log for details)
    while executing
"$post $targetname"
:info:build Warning: the following items did not execute (for atlas): org.macports.destroot org.macports.build
:notice:build Log for atlas is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_math_atlas/main.log

The platform is a dual 1.73 GHz PowerPC G4 Quicksilver. The build log was attached.

[dbevans (David B. Evans)]

I'm see a similar error using a single processor 867Mhz G4 Quicksilver Error occurs during the post-build phase.

:debug:build Executing proc-post-org.macports.build-build-0
:info:build Undefined symbols:
:info:build   "save_world", referenced from:
:info:build       _ATL_cger2k__900003 in libatlas.a(ATL_cger2k__900003.o)
:info:build   "rest_world", referenced from:
:info:build       _ATL_cger2k__900003 in libatlas.a(ATL_cger2k__900003.o)
:info:build ld: symbol(s) not found

Log file attached. I'm using the +gcc44 variant (haven't tried others).

[dbevans (David B. Evans)]

devans log file

[alun.j.carr@…]

Cc Me!

[alun.j.carr@…]

I'm having the same problem on a 1.5 GHz 12" PowerBook G4, 1.25 GB RAM, OS X 10.5.8, Xcode 3.1.4.

[razzfazz (Daniel Becker)]

Same problem here, PowerBook G4 1.5GHz, 10.5.8.

[ryandesign (Ryan Carsten Schmidt)]

Actually this ticket has gotten confused and contains two distinct errors: The original one reported: "duplicate symbol _ATL_DecAtomicCount", for which we should probably shift any discussion over to #29310; and "Undefined symbols save_world rest_world", which I guess we'll make this ticket about now.

[trog24 (Frank J. R. Hanstick)]

Cc Me!

[trog24 (Frank J. R. Hanstick)]

Another log with undefined.

[trog24 (Frank J. R. Hanstick)]

Another undefined log.

[Veence (Vincent)]

I am working on the 3.9.40 newest version. If you can hold a day or two, I might have a new Portfile before the end of the week-end.

[ryandesign (Ryan Carsten Schmidt)]

#29465 might be a duplicate.

[trog24 (Frank J. R. Hanstick)]

sudo port upgrade installed following a sudo port selfupdate resulted in atlas failure for Undefined save_world rest_world log attached. Platform is dual 1.73 GHz PowerPC G4 running MacOS 10.5.8.

[trog24 (Frank J. R. Hanstick)]

Atlas log

[trog24 (Frank J. R. Hanstick)]

Atlas upgrade failure log.

[trog24 (Frank J. R. Hanstick)]

Atlas Upgrade failure, see attached log.

[trog24 (Frank J. R. Hanstick)]

Atlas upgrade failure. See attached log. Is this ever going to get fixed?

[trog24 (Frank J. R. Hanstick)]

build log

[trog24 (Frank J. R. Hanstick)]

Atlas upgraded to 3.9.37_0+gcc44. This defect can now be considered closed. Thank you.

[ronald.sellar@…]

I'm getting this error again building atlas 3.9.47_0+gcc44 on a G5 dual core as part of a port upgrade outdated command. Even after a sudo port selfupdate (to Macports 2.0.3).

[ronald.sellar@…]

log file on G5 Macports 2.0.3, atlas 3.9.47_0+gcc44

[Veence (Vincent)]

I'm constantly in touch with ATLAS author and maintainer, so I'll ask him what is this error about.

[Veence (Vincent)]

I am going to commit 3.9.50 on Monday, so please hang on and try again once the new Portfile will be available.

[punch@…]

Just wondering where this one is. I see a commit coming to 3.9.50 from about 3 months ago but haven't seen it happen. I am getting the same error on 10.5.8, ppc, gcc4.4. I appreciate all the help that is being given, so I am just asking for status. Thanks

[Veence (Vincent)]

It has been postponed because there was unsolved problems. As strange as it may be, we are still working on it with Atlas maintainer/author. Stay tuned!

[Veence (Vincent)]

This must be solved now. I close this bug.