#29464 closed defect (fixed)
hdf5-18 +gcc45 has an undeclared dependency on openmpi
Reported by: | jdswinbank (John Swinbank) | Owned by: | macports-tickets@… |
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Priority: | Normal | Milestone: | |
Component: | ports | Version: | 1.9.2 |
Keywords: | Cc: | mamoll (Mark Moll) | |
Port: | hdf5-18 |
Description
Attempting to install hdf5-18 @1.8.7 +gcc45 produces:
$ sudo port install -d hdf5=18 +gcc45 [...] checking for Fortran libraries of /opt/local/bin/gfortran-mp-4.5... -L/opt/local/lib -L/opt/local/lib/gcc45/gcc/x86_64-apple-darwin10/4.5.3 -L/opt/local/lib/gcc45/gcc/x86_64-apple-darwin10/4.5.3/../../.. -lmpi_f90 -lmpi_f77 -lmpi -lgfortran checking for dummy main to link with Fortran libraries... unknown configure: error: in `/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdf5-18/work/hdf5-1.8.7': configure: error: linking to Fortran libraries from C fails See `config.log' for more details shell command " cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdf5-18/work/hdf5-1.8.7" && ./configure --prefix=/opt/local --with-zlib=yes --with-szlib=yes --enable-filters=all --enable-production --enable-cxx --enable-shared --enable-static --disable-parallel --enable-fortran LDFLAGS="-L/opt/local/lib" " returned error 1 Error: Target org.macports.configure returned: configure failure: shell command failed (see log for details) DEBUG: Backtrace: configure failure: shell command failed (see log for details) while executing "$procedure $targetname" Warning: the following items did not execute (for hdf5-18): org.macports.activate org.macports.configure org.macports.build org.macports.destroot org.macports.install Log for hdf5-18 is at: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdf5-18/main.log Error: Status 1 encountered during processing. To report a bug, see <http://guide.macports.org/#project.tickets>
Checking /opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_hdf5-18/work/hdf5-1.8.7/config.log, I have:
configure:5960: /usr/bin/gcc-4.2 -o conftest -pipe -O2 -arch x86_64 -I/opt/local/include -L/opt/local/lib conftest.c -L/opt/local/lib -L/opt/local/lib/gcc45/gcc/x86_64-apple-darwin10/4.5.3 -L/opt/local/lib/gcc45/gcc/x86_64-apple-d ld: library not found for -lmpi_f90 collect2: ld returned 1 exit status
libmpi_f90.dylib is provided by openmpi; sure enough, installing that package fixes the hdf5-18 build.
Change History (2)
comment:1 Changed 13 years ago by mamoll (Mark Moll)
Resolution: | → fixed |
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Status: | new → closed |
comment:2 Changed 13 years ago by jmroot (Joshua Root)
Port: | hdf5-18 added |
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Fixed in r78622.