py27-tables @2.3.1 - build failure

[freezingmariner@…]

py27-tables is not building on my 10.7.4 system with hdf5-18+gcc46+openmpi.

Here is the error log:

:info:build * Found numpy 1.6.2 package installed.
:info:build * Found numexpr 1.4.2 package installed.
:info:build * Found Cython 0.16 package installed.
:info:build * Found HDF5 headers at ``/opt/local/include``, library at ``/opt/local/lib``.
:info:build .. WARNING:: Could not find the HDF5 runtime.
:info:build    The HDF5 shared library was *not* found in the default library
:info:build    paths. In case of runtime problems, please remember to install it.
:info:build * Found LZO 2 headers at ``/opt/local/include``, library at ``/opt/local/lib``.
:info:build .. WARNING:: Could not find the LZO 2 runtime.
:info:build    The LZO 2 shared library was *not* found in the default library
:info:build    paths. In case of runtime problems, please remember to install it.
:info:build * Skipping detection of LZO 1 since LZO 2 has already been found.
:info:build * Found bzip2 headers at ``/opt/local/include``, library at ``/opt/local/lib``.
:info:build cythoning tables/linkExtension.pyx to tables/linkExtension.c
:info:build running build_ext
:info:build building 'tables.utilsExtension' extension
:info:build C compiler: /usr/bin/clang -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64
:info:build 
:info:build compile options: '-DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/usr/include -I/usr/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c'
:info:build extra options: '-arch x86_64 -Isrc -DH5_USE_16_API'
:info:build clang: blosc/blosc.c
:info:build clang: tables/utilsExtension.c
:info:build In file included from tables/utilsExtension.c:239:
:info:build In file included from /opt/local/include/hdf5.h:24:
:info:build /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found
:info:build #   include <mpi.h>
:info:build             ^
:info:build 1 error generated.
:info:build In file included from tables/utilsExtension.c:239:
:info:build In file included from /opt/local/include/hdf5.h:24:
:info:build /opt/local/include/H5public.h:61:13: fatal error: 'mpi.h' file not found
:info:build #   include <mpi.h>
:info:build             ^
:info:build 1 error generated.
:info:build error: Command "/usr/bin/clang -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -arch x86_64 -DNDEBUG=1 -DHAVE_LZO2_LIB=1 -DHAVE_BZ2_LIB=1 -Iblosc -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/site-packages/numpy/core/include -I/opt/local/include -I/usr/include -I/usr/local/include -I/opt/local/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -c tables/utilsExtension.c -o build/temp.macosx-10.7-x86_64-2.7/tables/utilsExtension.o -arch x86_64 -Isrc -DH5_USE_16_API" failed with exit status 1
:info:build Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-tables/py27-tables/work/tables-2.3.1" && /opt/local/Library/Frameworks/Python.framework/Versions/2.7/bin/python2.7 setup.py --no-user-cfg build_ext --inplace --hdf5=/opt/local --bzip2=/opt/local --lzo=/opt/local 
:info:build Exit code: 1
:error:build org.macports.build for port py27-tables returned: command execution failed
:debug:build Error code: CHILDSTATUS 3604 1
:debug:build Backtrace: command execution failed
    while executing
"system -nice 0 $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec build"
    (procedure "portbuild::build_main" line 8)
    invoked from within
"$procedure $targetname"
:info:build Warning: targets not executed for py27-tables: org.macports.activate org.macports.build org.macports.destroot org.macports.install
:notice:build Please see the log file for port py27-tables for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-tables/py27-tables/main.log

[g5pw (Aljaž Srebrnič)]

Fixed in r93909.