atlas: upgrade 3.9.84_0 < 3.10.0_0 fails

[cdeil (Christoph Deil)]

Upgrading atlas 3.9.84_0 < 3.10.0_0 fails on my MacBook running OS X Lion (see attached main.log)

$ port outdated
The following installed ports are outdated:
atlas                          3.9.84_0 < 3.10.0_0       
$ port installed atlas
The following ports are currently installed:
  atlas @3.9.84_0+clang (active)
$ sudo port upgrade atlas

[ryandesign (Ryan Carsten Schmidt)]

The log you attached has several lines that say "Skipping completed", meaning this was not a clean attempt. Please "sudo port clean atlas" and try again, and if it fails again, attach the new main.log.

[cdeil (Christoph Deil)]

Attached find, main_after_clean.log, the build log after running port clean. As far as I can see the problem is the same as in main.log.

$ sudo port clean atlas
Password:
--->  Cleaning atlas
$ sudo port upgrade atlas
--->  Computing dependencies for atlas
--->  Fetching archive for atlas
--->  Attempting to fetch atlas-3.10.0_0+clang.darwin_11.x86_64.tbz2 from http://packages.macports.org/atlas
--->  Fetching distfiles for atlas
--->  Verifying checksum(s) for atlas
--->  Extracting atlas
--->  Applying patches to atlas
--->  Configuring atlas
Use of clang is still experimental and may result in reduced performance or misbehavior. Use with caution.
Selected gfortran47.
--->  Building atlas
Error: org.macports.build for port atlas returned: command execution failed
Please see the log file for port atlas for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_atlas/atlas/main.log
Error: Unable to upgrade port: 1
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets

[Veence (Vincent)]

Do you still have the issue? If yes, try to build with gcc 4.6 or 4.7 instead (gcc46 or gcc47 variant)

[cdeil (Christoph Deil)]

I did a clean re-install of Lion and Macports on that machine for unrelated reasons. Now the atlas install went fine (actually I think the binary was installed, but I'm not sure). Thanks for your help! Please close this ticket.

[Veence (Vincent)]

Ok, thanks!