Opened 12 years ago
Last modified 10 years ago
#37022 new defect
py32-mahotas: ValueError in build_ext: underlying buffer has been detached
Reported by: | cdeil (Christoph Deil) | Owned by: | stromnov (Andrey Stromnov) |
---|---|---|---|
Priority: | Normal | Milestone: | |
Component: | ports | Version: | 2.1.2 |
Keywords: | Cc: | petrrr | |
Port: | py-mahotas |
Description
I am getting this error when trying to install py32-mahotas
on OS X 10.8.
Full log attached
:info:build running build_ext :info:build customize UnixCCompiler :info:build customize UnixCCompiler using build_ext :info:build customize UnixCCompiler :info:build #### ['/usr/bin/clang', '-DNDEBUG', '-g', '-fwrapv', '-O3', '-Wall', '-Wstrict-prototypes', '-arch', 'x86_64'] ####### :info:build Missing compiler_cxx fix for UnixCCompiler :info:build customize UnixCCompiler using build_ext :info:build building 'mahotas._histogram' extension :info:build compiling C++ sources :info:build C compiler: /usr/bin/clang++ -DNDEBUG -g -fwrapv -O3 -Wall -arch x86_64 :info:build :info:build creating build/temp.macosx-10.8-x86_64-3.2 :info:build creating build/temp.macosx-10.8-x86_64-3.2/mahotas :info:build compile options: '-I/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/core/include -I/opt/local/Library/Frameworks/Python.framework/Versions/3.2/include/python3.2m -c' :info:build clang++: mahotas/_histogram.cpp :info:build Traceback (most recent call last): :info:build File "setup.py", line 106, in <module> :info:build test_suite = 'nose.collector', :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/core.py", line 186, in setup :info:build return old_setup(**new_attr) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/core.py", line 148, in setup :info:build dist.run_commands() :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/dist.py", line 929, in run_commands :info:build self.run_command(cmd) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/dist.py", line 948, in run_command :info:build cmd_obj.run() :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/command/build.py", line 37, in run :info:build old_build.run(self) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/command/build.py", line 126, in run :info:build self.run_command(cmd_name) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/cmd.py", line 313, in run_command :info:build self.distribution.run_command(command) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/dist.py", line 948, in run_command :info:build cmd_obj.run() :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/command/build_ext.py", line 232, in run :info:build self.build_extensions() :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/distutils/command/build_ext.py", line 453, in build_extensions :info:build self.build_extension(ext) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/command/build_ext.py", line 345, in build_extension :info:build **kws) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/ccompiler.py", line 26, in <lambda> :info:build m = lambda self, *args, **kw: func(self, *args, **kw) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/ccompiler.py", line 203, in CCompiler_compile :info:build self._compile(obj, src, ext, cc_args, extra_postargs, pp_opts) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/ccompiler.py", line 26, in <lambda> :info:build m = lambda self, *args, **kw: func(self, *args, **kw) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/unixccompiler.py", line 35, in UnixCCompiler__compile :info:build extra_postargs, display = display) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/ccompiler.py", line 26, in <lambda> :info:build m = lambda self, *args, **kw: func(self, *args, **kw) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/ccompiler.py", line 57, in CCompiler_spawn :info:build s,o = exec_command(cmd) :info:build File "/opt/local/Library/Frameworks/Python.framework/Versions/3.2/lib/python3.2/site-packages/numpy/distutils/exec_command.py", line 197, in exec_command :info:build if _with_python and (0 or sys.__stdout__.fileno()==-1): :info:build ValueError: underlying buffer has been detached :info:build Command failed: cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-mahotas/py32-mahotas/work/mahotas-0.9.4" && /opt/local/Library/Frameworks/Python.framework/Versions/3.2/bin/python3.2 setup.py --no-user-cfg build :info:build Exit code: 1 :error:build org.macports.build for port py32-mahotas returned: command execution failed :debug:build Error code: CHILDSTATUS 74212 1 :debug:build Backtrace: command execution failed while executing "system -nice 0 $fullcmdstring" ("eval" body line 1) invoked from within "eval system $notty $nice \$fullcmdstring" invoked from within "command_exec build" (procedure "portbuild::build_main" line 8) invoked from within "$procedure $targetname" :info:build Warning: targets not executed for py32-mahotas: org.macports.activate org.macports.build org.macports.destroot org.macports.install :notice:build Please see the log file for port py32-mahotas for details: /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-mahotas/py32-mahotas/main.log
Attachments (1)
Change History (9)
Changed 12 years ago by cdeil (Christoph Deil)
comment:1 Changed 12 years ago by ryandesign (Ryan Carsten Schmidt)
Cc: | stromnov@… removed |
---|---|
Owner: | changed from macports-tickets@… to stromnov@… |
comment:2 Changed 12 years ago by cdeil (Christoph Deil)
comment:3 Changed 12 years ago by cdeil (Christoph Deil)
Can anyone confirm this issue with py32-mahotas
and py32-scikits-image
so that we know it's not just a problem with my installation?
Also can someone please add py32-scikits-image
and maybe py32-numpy
to the ports field of this ticket?
Note that this issue could very well be Macports specific, since Google doesn't find anything useful on this issue.
comment:4 Changed 12 years ago by stromnov (Andrey Stromnov)
It's a problem with setuptools dist.py (in handle_display_option).
For some reason, this fails on OSX with py3.2:
import sys sys.stdout.detach()
comment:5 Changed 12 years ago by cdeil (Christoph Deil)
For reference: discussion on this issue is taking place at https://github.com/statsmodels/statsmodels/issues/204#issuecomment-10535204
comment:7 Changed 10 years ago by petrrr
Note that port py32-mahotas
will not build anymore because py32-cython
has been made obsolete during the python{31,32} deprecation process.
comment:8 Changed 10 years ago by petrrr
Port: | py-mahotas added; py32-mahotas removed |
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I do see the same error when trying to install
py32-scikits-image
, so maybe the problem is actually withpy32-numpy
?https://github.com/luispedro/mahotas/issues/25