Opened 12 years ago

Closed 12 years ago

#37200 closed defect (fixed)

bowtie doesn't build on ML

Reported by: mesh89@… Owned by: haroldpimentel@…
Priority: Normal Milestone:
Component: ports Version: 2.1.2
Keywords: Cc:
Port: bowtie

Description

Trying to install bowtie 0.12.7 gives me this output

--->  Computing dependencies for bowtie
--->  Fetching archive for bowtie
--->  Attempting to fetch bowtie-0.12.7_0.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/bowtie
--->  Attempting to fetch bowtie-0.12.7_0.darwin_12.x86_64.tbz2 from http://packages.macports.org/bowtie
--->  Attempting to fetch bowtie-0.12.7_0.darwin_12.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/bowtie
--->  Fetching distfiles for bowtie
--->  Verifying checksum(s) for bowtie
--->  Extracting bowtie
--->  Configuring bowtie
--->  Building bowtie
Error: org.macports.build for port bowtie returned: command execution failed
Please see the log file for port bowtie for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_ports_science_bowtie/bowtie/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port bowtie failed

Attaching log

Attachments (2)

main.log (17.4 KB) - added by mesh89@… 12 years ago.
Portfile.diff (283 bytes) - added by ci42 12 years ago.

Download all attachments as: .zip

Change History (7)

Changed 12 years ago by mesh89@…

Attachment: main.log added

comment:1 Changed 12 years ago by mf2k (Frank Schima)

Owner: changed from macports-tickets@… to haroldpimentel@…
Port: bowtie added

In the future, please fill in the Port field and Cc the port maintainer(s).

comment:2 Changed 12 years ago by ci42

It seems that bowtie doesn't like clang. See the attached patch.

Changed 12 years ago by ci42

Attachment: Portfile.diff added

comment:3 Changed 12 years ago by jmroot (Joshua Root)

Actually fixing the invalid code would be better (clang is usually right when it complains about something).

comment:4 Changed 12 years ago by ci42

Committed suggested patch in r100342 (maintainer timeout).

Opened a issue upstream: http://sourceforge.net/tracker/?func=detail&aid=3594088&group_id=236897&atid=1101606

comment:5 Changed 12 years ago by ci42

Resolution: fixed
Status: newclosed

Version 0.12.9 fixes the build issues with clang (see #37335).

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