py27-spatialite @2.6.2: patch failure

[bernard-giroux (Bernard Giroux)]

OS X 10.8.3 Xcode 4.6.1

I got this problem while trying to install qgis.

I cleaned everything, did

sudo port -n upgrade --force python27

to no avail

--->  Computing dependencies for py27-spatialite
--->  Applying patches to py27-spatialite
Error: org.macports.patch for port py27-spatialite returned: command execution failed
Please see the log file for port py27-spatialite for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port py27-spatialite failed

log file attached.

[larryv (Lawrence Velázquez)]

In the future, please Cc relevant port maintainers and provide log output as an attachment (instead of pasting it into the ticket description or comments).

[anddam (Andrea D'Amore)]

My guess is that you had a non-clean py27-spatialite work directory, ​see line 252.

Run

port clean py27-spatialite
port upgrade py27-spatialite

I'm not sure why your python27 upgrade command tried to upgrade py27-spatialite without a -R option, and why did you try to upgrade python27 in order to install qgis.

[bernard-giroux (Bernard Giroux)]

Hi,

Thanks for the input. I'm traveling right now, with another machine (same OS & Xcode, but on which "sudo port -n upgrade --force python27" was _not_ done). I get this (log file also uploaded):

{521}torngat:~% sudo port clean --all py27-spatialite
dyld: DYLD_ environment variables being ignored because main executable (/usr/bin/sudo) is setuid or setgid
--->  Cleaning py27-spatialite
{522}torngat:~% sudo port install py27-spatialite
dyld: DYLD_ environment variables being ignored because main executable (/usr/bin/sudo) is setuid or setgid
--->  Computing dependencies for py27-spatialite
--->  Fetching archive for py27-spatialite
--->  Attempting to fetch py27-spatialite-2.6.2_1.darwin_12.x86_64.tbz2 from http://lil.fr.packages.macports.org/py27-spatialite
--->  Attempting to fetch py27-spatialite-2.6.2_1.darwin_12.x86_64.tbz2.rmd160 from http://lil.fr.packages.macports.org/py27-spatialite
--->  Installing py27-spatialite @2.6.2_1
--->  Activating py27-spatialite @2.6.2_1
--->  Cleaning py27-spatialite
--->  Updating database of binaries: 100.0%
--->  Scanning binaries for linking errors: 100.0%
--->  Found 1 broken file(s), matching files to ports
--->  Found 1 broken port(s), determining rebuild order
--->  Rebuilding in order
    py27-spatialite @2.6.2 
--->  Computing dependencies for py27-spatialite
--->  Cleaning py27-spatialite
--->  Scanning binaries for linking errors: 100.0%
--->  Found 1 broken file(s), matching files to ports
--->  Found 1 broken port(s), determining rebuild order
--->  Rebuilding in order
    py27-spatialite @2.6.2 
--->  Computing dependencies for py27-spatialite
--->  Cleaning py27-spatialite
--->  Unable to uninstall py27-spatialite @2.6.2_1, the following ports depend on it:
--->    qgis @1.8.0_0+postgis2+postgresql91+python27
Warning: Uninstall forced.  Proceeding despite dependencies.
--->  Deactivating py27-spatialite @2.6.2_1
--->  Unable to deactivate py27-spatialite @2.6.2_1, the following ports depend on it:
--->    qgis @1.8.0_0+postgis2+postgresql91+python27
Warning: Deactivate forced.  Proceeding despite dependencies.
--->  Cleaning py27-spatialite
--->  Uninstalling py27-spatialite @2.6.2_1
--->  Cleaning py27-spatialite
--->  Computing dependencies for py27-spatialite
--->  Fetching distfiles for py27-spatialite
--->  Attempting to fetch pyspatialite-2.6.2-spatialite.2.3.1.tar.gz from http://mse.uk.distfiles.macports.org/sites/distfiles.macports.org/py-spatialite
--->  Verifying checksum(s) for py27-spatialite
--->  Extracting py27-spatialite
--->  Applying patches to py27-spatialite
Error: reinplace: sed: RE error: illegal byte sequence
Error: org.macports.patch for port py27-spatialite returned: reinplace sed(1) failed
Please see the log file for port py27-spatialite for details:
   /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/main.log
--->  Scanning binaries for linking errors: 100.0%
--->  No broken files found.

[anddam (Andrea D'Amore)]

Replying to bernard.giroux@…:

another machine (same OS & Xcode, but on which "sudo port -n upgrade --force python27" was _not_ done)

Error: reinplace: sed: RE error: illegal byte sequence
Error: org.macports.patch for port py27-spatialite returned: reinplace sed(1) failed

This is a different issue than the first one, here the patch files are correctly applied and then ​mp breaks on the post-patch ​reinplace command.

The issue is due to change to sed engine in Mountain Lion (I've no access to a ML system), see ticket #35421. Should be fixed in r104414.

This ticket is about the original problem, my guess is that a port clean (no need to use --all) will fix that as well so I'm closing the ticket. Feel free to reopen it if that's not the case.

[bernard-giroux (Bernard Giroux)]

Replying to and.damore@…:

Replying to bernard.giroux@…:

another machine (same OS & Xcode, but on which "sudo port -n upgrade --force python27" was _not_ done)

Error: reinplace: sed: RE error: illegal byte sequence
Error: org.macports.patch for port py27-spatialite returned: reinplace sed(1) failed

This is a different issue than the first one, here the patch files are correctly applied and then ​mp breaks on the post-patch ​reinplace command.

The issue is due to change to sed engine in Mountain Lion (I've no access to a ML system), see ticket #35421. Should be fixed in r104414.

I confirm the fix on my "traveling" ML machine.

This ticket is about the original problem, my guess is that a port clean (no need to use --all) will fix that as well so I'm closing the ticket. Feel free to reopen it if that's not the case.

Thanks, I'll test when I get back home later this week.