py27-spatialite @2.6.2 Failed to install

[bernard-giroux (Bernard Giroux)]

OS X 10.8.3 Xcode 4.6.1

I got this problem while trying to install qgis.

I cleaned everything, did

sudo port -n upgrade --force python27

to no avail

--->  Computing dependencies for py27-spatialite
--->  Applying patches to py27-spatialite
Error: org.macports.patch for port py27-spatialite returned: command execution failed
Please see the log file for port py27-spatialite for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/main.log
To report a bug, follow the instructions in the guide:
    http://guide.macports.org/#project.tickets
Error: Processing of port py27-spatialite failed

log file contains

cat     /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/main.log
version:1
:debug:main epoch: in tree: 2 installed: 2
:debug:main python27 2.7.3_1 exists in the ports tree
:debug:main python27 2.7.3_1  is the latest installed
:debug:main python27 2.7.3_1  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/lang/python27
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! python27 2.7.3_1 >= python27 2.7.3_1
:debug:main epoch: in tree: 0 installed: 0
:debug:main gettext 0.18.2.1_0 exists in the ports tree
:debug:main gettext 0.18.2.1_0  is the latest installed
:debug:main gettext 0.18.2.1_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/gettext
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/compiler_blacklist_versions-1.0.tcl
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main compiler clang 425.0.27 not blacklisted because does not match {clang < 211.10.1}
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! gettext 0.18.2.1_0 >= gettext 0.18.2.1_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main expat 2.1.0_0 exists in the ports tree
:debug:main expat 2.1.0_0  is the latest installed
:debug:main expat 2.1.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/expat
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! expat 2.1.0_0 >= expat 2.1.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main libiconv 1.14_0 exists in the ports tree
:debug:main libiconv 1.14_0  is the latest installed
:debug:main libiconv 1.14_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/textproc/libiconv
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! libiconv 1.14_0 >= libiconv 1.14_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main ncurses 5.9_2 exists in the ports tree
:debug:main ncurses 5.9_2  is the latest installed
:debug:main ncurses 5.9_2  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/ncurses
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! ncurses 5.9_2 >= ncurses 5.9_2
:debug:main epoch: in tree: 0 installed: 0
:debug:main zlib 1.2.7_0 exists in the ports tree
:debug:main zlib 1.2.7_0  is the latest installed
:debug:main zlib 1.2.7_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/zlib
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/xcodeversion-1.0.tcl
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! zlib 1.2.7_0 >= zlib 1.2.7_0
:debug:main epoch: in tree: 1 installed: 1
:debug:main openssl 1.0.1e_1 exists in the ports tree
:debug:main openssl 1.0.1e_1  is the latest installed
:debug:main openssl 1.0.1e_1  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/openssl
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! openssl 1.0.1e_1 >= openssl 1.0.1e_1
:debug:main epoch: in tree: 0 installed: 0
:debug:main sqlite3 3.7.15.2_0 exists in the ports tree
:debug:main sqlite3 3.7.15.2_0  is the latest installed
:debug:main sqlite3 3.7.15.2_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/sqlite3
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! sqlite3 3.7.15.2_0 >= sqlite3 3.7.15.2_0
:debug:main epoch: in tree: 20090923 installed: 20090923
:debug:main libedit 20121213-3.0_0 exists in the ports tree
:debug:main libedit 20121213-3.0_0  is the latest installed
:debug:main libedit 20121213-3.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/devel/libedit
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! libedit 20121213-3.0_0 >= libedit 20121213-3.0_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main db46 4.6.21_7 exists in the ports tree
:debug:main db46 4.6.21_7  is the latest installed
:debug:main db46 4.6.21_7  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/db46
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/muniversal-1.0.tcl
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! db46 4.6.21_7 >= db46 4.6.21_7
:debug:main epoch: in tree: 0 installed: 0
:debug:main bzip2 1.0.6_0 exists in the ports tree
:debug:main bzip2 1.0.6_0  is the latest installed
:debug:main bzip2 1.0.6_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/archivers/bzip2
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main universal variant already exists, so not adding the default one
:debug:main No need to upgrade! bzip2 1.0.6_0 >= bzip2 1.0.6_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main python_select 0.3_2 exists in the ports tree
:debug:main python_select 0.3_2  is the latest installed
:debug:main python_select 0.3_2  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/sysutils/python_select
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main Using group file /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/group/select-1.0.tcl
:debug:main universal_variant is false, so not adding the default universal variant
:debug:main No need to upgrade! python_select 0.3_2 >= python_select 0.3_2
:debug:main epoch: in tree: 0 installed: 0
:debug:main spatialite 2.3.1_1 exists in the ports tree
:debug:main spatialite 2.3.1_1  is the latest installed
:debug:main spatialite 2.3.1_1  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/databases/spatialite
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! spatialite 2.3.1_1 >= spatialite 2.3.1_1
:debug:main epoch: in tree: 0 installed: 0
:debug:main geos 3.3.8_0 exists in the ports tree
:debug:main geos 3.3.8_0  is the latest installed
:debug:main geos 3.3.8_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/science/geos
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! geos 3.3.8_0 >= geos 3.3.8_0
:debug:main epoch: in tree: 0 installed: 0
:debug:main proj 4.8.0_0 exists in the ports tree
:debug:main proj 4.8.0_0  is the latest installed
:debug:main proj 4.8.0_0  is active
:debug:main Merging existing variants '' into variants
:debug:main new fully merged portvariants: 
:debug:main Changing to port directory: /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/gis/proj
:debug:main OS darwin/12.3.0 (Mac OS X 10.8) arch i386
:debug:main org.macports.load registered provides 'load', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.unload registered provides 'unload', a pre-existing procedure. Target override will not be provided
:debug:main org.macports.distfiles registered provides 'distfiles', a pre-existing procedure. Target override will not be provided
:debug:main adding the default universal variant
:debug:main Reading variant descriptions from /opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/_resources/port1.0/variant_descriptions.conf
:debug:main No need to upgrade! proj 4.8.0_0 >= proj 4.8.0_0
:msg:main --->  Computing dependencies for py27-spatialite:info:main .:debug:main py27-spatialite has no conflicts
:debug:main Searching for dependency: python27
:debug:main Found Dependency: receipt exists for python27
:debug:main Searching for dependency: spatialite
:debug:main Found Dependency: receipt exists for spatialite
:debug:main Searching for dependency: geos
:debug:main Found Dependency: receipt exists for geos
:debug:main Searching for dependency: proj
:debug:main Found Dependency: receipt exists for proj
:msg:main 
:debug:main Executing org.macports.main (py27-spatialite)
:debug:main changing euid/egid - current euid: 0 - current egid: 0
:debug:main egid changed to: 501
:debug:main euid changed to: 502
:debug:main Skipping completed org.macports.archivefetch (py27-spatialite)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.fetch (py27-spatialite)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.checksum (py27-spatialite)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:main Skipping completed org.macports.extract (py27-spatialite)
:debug:main Privilege de-escalation not attempted as not running as root.
:debug:patch patch phase started at Sat Mar 23 08:25:43 EDT 2013
:debug:patch Executing org.macports.patch (py27-spatialite)
:notice:patch --->  Applying patches to py27-spatialite
:info:patch --->  Applying patch-setup_py.diff
:debug:patch Environment: CPATH='/opt/local/include' CC_PRINT_OPTIONS_FILE='/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/work/.CC_PRINT_OPTIONS' LIBRARY_PATH='/opt/local/lib' CC_PRINT_OPTIONS='YES' MACOSX_DEPLOYMENT_TARGET='10.8'
:debug:patch Assembled command: 'cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/work/pyspatialite-2.6.2-spatialite.2.3.1" && /usr/bin/patch -p0'
:debug:patch Executing command line:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/work/pyspatialite-2.6.2-spatialite.2.3.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-spatialite/files/patch-setup_py.diff'
:info:patch patching file setup.py
:info:patch Reversed (or previously applied) patch detected!  Assume -R? [n] 
:info:patch Apply anyway? [n] 
:info:patch Skipping patch.
:info:patch 1 out of 1 hunk ignored -- saving rejects to file setup.py.rej
:info:patch Command failed:  cd "/opt/local/var/macports/build/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/work/pyspatialite-2.6.2-spatialite.2.3.1" && /usr/bin/patch -p0 < '/opt/local/var/macports/sources/rsync.macports.org/release/tarballs/ports/python/py-spatialite/files/patch-setup_py.diff'
:info:patch Exit code: 1
:error:patch org.macports.patch for port py27-spatialite returned: command execution failed
:debug:patch Error code: CHILDSTATUS 34869 1
:debug:patch Backtrace: command execution failed
    while executing
"system $fullcmdstring"
    ("eval" body line 1)
    invoked from within
"eval system $notty $nice \$fullcmdstring"
    invoked from within
"command_exec patch "" "< '$patch'""
    (procedure "portpatch::patch_main" line 35)
    invoked from within
"$procedure $targetname"
:info:patch Warning: targets not executed for py27-spatialite: org.macports.activate org.macports.patch org.macports.configure org.macports.build org.macports.destroot org.macports.install
:notice:patch Please see the log file for port py27-spatialite for details:
    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_python_py-spatialite/py27-spatialite/main.log